Wall clock time and date at job start Tue Mar 31 2020 18:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47427 * 2 1 4 4 C 1.46497 * 119.99980 * 275.19387 * 3 2 1 5 5 C 1.52996 * 109.47435 * 269.99753 * 4 3 2 6 6 N 1.46500 * 109.47508 * 179.97438 * 5 4 3 7 7 C 1.36943 * 119.99958 * 179.97438 * 6 5 4 8 8 H 1.07999 * 120.00073 * 0.02562 * 7 6 5 9 9 C 1.38812 * 119.99756 * 180.02562 * 7 6 5 10 10 N 1.31621 * 119.99575 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 120.00198 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.47154 * 89.99771 * 11 9 7 13 13 H 1.48494 * 109.47174 * 209.99998 * 11 9 7 14 14 H 1.48504 * 109.47196 * 329.99749 * 11 9 7 15 15 C 1.34775 * 120.00002 * 95.19019 * 3 2 1 16 16 O 1.21284 * 119.99785 * 183.93073 * 15 3 2 17 17 C 1.50692 * 120.00121 * 3.92796 * 15 3 2 18 18 H 1.08999 * 109.47431 * 313.27677 * 17 15 3 19 19 C 1.53005 * 109.47020 * 73.28016 * 17 15 3 20 20 C 1.53004 * 109.47146 * 193.27961 * 17 15 3 21 21 C 1.50704 * 109.47284 * 175.00028 * 20 17 15 22 22 C 1.38259 * 119.94628 * 269.72852 * 21 20 17 23 23 C 1.38141 * 120.05892 * 179.72352 * 22 21 20 24 24 C 1.38734 * 119.94103 * 0.54645 * 23 22 21 25 25 O 1.35898 * 120.05614 * 179.74743 * 24 23 22 26 26 C 1.42903 * 117.00157 * 359.97438 * 25 24 23 27 27 C 1.38734 * 119.88977 * 359.72666 * 24 23 22 28 28 C 1.38149 * 119.94007 * 0.02562 * 27 24 23 29 29 H 1.09004 * 109.46712 * 299.99867 * 1 2 3 30 30 H 1.08997 * 109.46934 * 59.99924 * 1 2 3 31 31 H 1.09004 * 109.47116 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47370 * 239.99627 * 2 1 3 33 33 H 1.09002 * 109.47394 * 120.00163 * 2 1 3 34 34 H 1.09005 * 109.47329 * 29.99918 * 4 3 2 35 35 H 1.09003 * 109.47556 * 149.99610 * 4 3 2 36 36 H 1.09005 * 109.46997 * 300.00369 * 5 4 3 37 37 H 1.09003 * 109.46865 * 59.99434 * 5 4 3 38 38 H 0.96996 * 120.00029 * 0.02562 * 6 5 4 39 39 H 0.97004 * 119.99303 * 180.02562 * 10 9 7 40 40 H 1.08997 * 109.46782 * 305.81514 * 19 17 15 41 41 H 1.09001 * 109.46905 * 185.81205 * 19 17 15 42 42 H 1.08999 * 109.46630 * 65.81831 * 19 17 15 43 43 H 1.08999 * 109.47084 * 294.99697 * 20 17 15 44 44 H 1.08998 * 109.47422 * 54.99842 * 20 17 15 45 45 H 1.08005 * 119.97103 * 359.97438 * 22 21 20 46 46 H 1.07995 * 120.03128 * 180.27469 * 23 22 21 47 47 H 1.09003 * 109.47070 * 179.97438 * 26 25 24 48 48 H 1.09003 * 109.47117 * 300.00060 * 26 25 24 49 49 H 1.09001 * 109.46957 * 59.99883 * 26 25 24 50 50 H 1.07998 * 120.02942 * 179.97438 * 27 24 23 51 51 H 1.07996 * 119.96632 * 179.97438 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1543 2.1100 -1.2635 5 6 3.5560 1.8849 -1.8340 6 7 3.6917 2.6133 -3.0978 7 6 4.8689 2.5606 -3.7954 8 1 5.6971 1.9817 -3.4142 9 6 4.9977 3.2512 -4.9927 10 7 6.1290 3.2001 -5.6634 11 14 3.5654 4.2530 -5.6518 12 1 3.6499 5.6405 -5.1293 13 1 3.6205 4.2786 -7.1355 14 1 2.2872 3.6363 -5.2145 15 6 2.3426 1.9813 1.1624 16 8 2.6787 3.1466 1.1701 17 6 2.2874 1.2045 2.4525 18 1 1.3501 0.6505 2.5032 19 6 3.4621 0.2257 2.5091 20 6 2.3724 2.1722 3.6346 21 6 2.1941 1.4095 4.9221 22 6 0.9296 1.2414 5.4553 23 6 0.7629 0.5378 6.6323 24 6 1.8669 0.0093 7.2854 25 8 1.7061 -0.6789 8.4462 26 6 0.3716 -0.8196 8.9374 27 6 3.1353 0.1841 6.7513 28 6 3.2961 0.8842 5.5712 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 1.4106 1.7482 -1.9736 35 1 2.0005 3.1747 -1.0873 36 1 4.2997 2.2468 -1.1239 37 1 3.7099 0.8203 -2.0102 38 1 2.9480 3.1335 -3.4400 39 1 6.2190 3.6830 -6.4999 40 1 3.4604 -0.3960 1.6138 41 1 3.3655 -0.4072 3.3913 42 1 4.3972 0.7833 2.5626 43 1 3.3464 2.6616 3.6341 44 1 1.5881 2.9238 3.5460 45 1 0.0710 1.6572 4.9490 46 1 -0.2255 0.4031 7.0461 47 1 0.3848 -1.3883 9.8673 48 1 -0.0542 0.1670 9.1205 49 1 -0.2339 -1.3453 8.1990 50 1 3.9963 -0.2261 7.2580 51 1 4.2833 1.0208 5.1553 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668648551.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:00 Heat of formation + Delta-G solvation = -62.240640 kcal Electronic energy + Delta-G solvation = -28636.655034 eV Core-core repulsion = 24728.761349 eV Total energy + Delta-G solvation = -3907.893685 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.49676 -40.91524 -38.79735 -37.63833 -36.53982 -35.55702 -33.74381 -32.10355 -31.78289 -31.27770 -29.48310 -28.57717 -27.06422 -25.87525 -24.67203 -23.87353 -23.44410 -22.84122 -21.66972 -20.08986 -19.43150 -19.04635 -18.30722 -17.37831 -17.15964 -16.68590 -16.56781 -16.40190 -16.17107 -15.77208 -15.40992 -15.31792 -15.02717 -14.90597 -14.71076 -14.65452 -14.43238 -14.14119 -14.07086 -13.56453 -13.36806 -13.33407 -13.14938 -13.01197 -12.87773 -12.78445 -12.62137 -12.45017 -12.34256 -12.22336 -12.10770 -11.98740 -11.85157 -11.83216 -11.69037 -11.61704 -11.03539 -10.69377 -9.90995 -9.72061 -9.38168 -9.01185 -8.06599 -5.42364 0.42039 0.45370 1.35718 1.41226 1.47662 1.61210 1.95954 2.42333 2.45860 2.80406 3.24318 3.41372 3.71193 3.82372 3.91099 3.97802 4.00254 4.06452 4.11121 4.14514 4.22650 4.31576 4.39255 4.41656 4.42680 4.49401 4.51151 4.53464 4.58153 4.68464 4.76548 4.80172 4.86995 4.89371 4.93211 4.97615 5.03766 5.06736 5.12924 5.19963 5.29342 5.35170 5.39497 5.43185 5.54813 5.70066 5.74540 5.85563 6.16168 6.42855 6.48687 7.01612 7.18405 7.75245 7.96439 9.14564 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.025729 B = 0.002022 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.002430 B =13846.350094 C =14206.464613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.088 3.912 3 N -0.604 5.604 4 C 0.116 3.884 5 C 0.151 3.849 6 N -0.755 5.755 7 C -0.242 4.242 8 H 0.053 0.947 9 C -0.062 4.062 10 N -0.981 5.981 11 Si 0.959 3.041 12 H -0.281 1.281 13 H -0.290 1.290 14 H -0.246 1.246 15 C 0.510 3.490 16 O -0.584 6.584 17 C -0.091 4.091 18 H 0.119 0.881 19 C -0.146 4.146 20 C -0.053 4.053 21 C -0.118 4.118 22 C -0.078 4.078 23 C -0.207 4.207 24 C 0.109 3.891 25 O -0.339 6.339 26 C 0.019 3.981 27 C -0.162 4.162 28 C -0.077 4.077 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.066 0.934 36 H 0.003 0.997 37 H 0.033 0.967 38 H 0.368 0.632 39 H 0.260 0.740 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.050 0.950 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.139 0.861 46 H 0.147 0.853 47 H 0.116 0.884 48 H 0.063 0.937 49 H 0.065 0.935 50 H 0.135 0.865 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.880 -12.403 29.763 37.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.033 4.033 3 N -0.336 5.336 4 C -0.008 4.008 5 C 0.024 3.976 6 N -0.401 5.401 7 C -0.373 4.373 8 H 0.071 0.929 9 C -0.254 4.254 10 N -0.631 5.631 11 Si 0.785 3.215 12 H -0.208 1.208 13 H -0.216 1.216 14 H -0.170 1.170 15 C 0.300 3.700 16 O -0.464 6.464 17 C -0.112 4.112 18 H 0.137 0.863 19 C -0.203 4.203 20 C -0.090 4.090 21 C -0.118 4.118 22 C -0.096 4.096 23 C -0.225 4.225 24 C 0.064 3.936 25 O -0.253 6.253 26 C -0.076 4.076 27 C -0.181 4.181 28 C -0.095 4.095 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.109 0.891 32 H 0.101 0.899 33 H 0.125 0.875 34 H 0.116 0.884 35 H 0.084 0.916 36 H 0.021 0.979 37 H 0.051 0.949 38 H 0.201 0.799 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.107 0.893 42 H 0.069 0.931 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.157 0.843 46 H 0.164 0.836 47 H 0.134 0.866 48 H 0.081 0.919 49 H 0.084 0.916 50 H 0.153 0.847 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -18.368 -11.988 29.862 37.052 hybrid contribution -0.227 0.978 -0.948 1.380 sum -18.595 -11.010 28.915 36.098 Atomic orbital electron populations 1.22164 0.94329 1.03628 1.02228 1.22073 0.95690 0.80501 1.05071 1.48000 1.64811 1.15569 1.05253 1.21366 0.96194 0.97621 0.85575 1.20944 0.95770 0.95005 0.85918 1.42514 1.13451 1.60195 1.23951 1.18985 0.91357 1.24991 1.01969 0.92935 1.25570 1.00070 1.01931 0.97804 1.69894 1.27170 1.48312 1.17713 0.85355 0.80112 0.78802 0.77204 1.20759 1.21618 1.17006 1.21408 0.75323 0.86967 0.86345 1.90699 1.49015 1.19116 1.87536 1.21278 1.03058 0.97132 0.89742 0.86272 1.21927 0.96131 0.98392 1.03871 1.20249 1.03085 0.95922 0.89794 1.19699 0.93713 1.01330 0.97083 1.21049 0.97072 0.96720 0.94797 1.21424 0.98703 1.03951 0.98435 1.19250 0.94655 0.93167 0.86492 1.86045 1.32201 1.70351 1.36672 1.23316 0.80834 1.02677 1.00726 1.20599 0.95575 1.04092 0.97804 1.21029 0.99216 0.95574 0.93688 0.92237 0.93110 0.89143 0.89867 0.87455 0.88375 0.91582 0.97893 0.94884 0.79868 0.93138 0.91110 0.89307 0.93092 0.91730 0.91225 0.84320 0.83581 0.86606 0.91884 0.91640 0.84742 0.84630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.12 10.24 71.98 0.74 -1.38 16 2 C 0.09 1.45 5.54 86.38 0.48 1.93 16 3 N -0.60 -15.32 2.47 -821.83 -2.03 -17.35 16 4 C 0.12 3.69 5.57 86.38 0.48 4.17 16 5 C 0.15 6.20 6.58 86.38 0.57 6.77 16 6 N -0.75 -37.28 5.41 -343.45 -1.86 -39.13 16 7 C -0.24 -14.51 10.47 84.03 0.88 -13.63 16 8 H 0.05 3.46 8.06 -2.91 -0.02 3.43 16 9 C -0.06 -3.77 5.50 84.86 0.47 -3.30 16 10 N -0.98 -64.26 13.97 21.65 0.30 -63.96 16 11 Si 0.96 46.36 27.74 68.60 1.90 48.27 16 12 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 13 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 14 H -0.25 -10.51 6.52 99.48 0.65 -9.86 16 15 C 0.51 14.13 6.90 87.65 0.60 14.73 16 16 O -0.58 -22.02 15.63 -3.04 -0.05 -22.06 16 17 C -0.09 -1.69 1.86 -11.54 -0.02 -1.71 16 18 H 0.12 1.60 7.18 -2.39 -0.02 1.58 16 19 C -0.15 -2.42 8.15 71.98 0.59 -1.83 16 20 C -0.05 -1.03 4.15 29.85 0.12 -0.91 16 21 C -0.12 -1.94 4.72 -19.85 -0.09 -2.03 16 22 C -0.08 -1.11 9.69 22.25 0.22 -0.90 16 23 C -0.21 -2.80 9.04 22.37 0.20 -2.60 16 24 C 0.11 1.79 6.69 22.51 0.15 1.94 16 25 O -0.34 -5.27 10.50 -92.41 -0.97 -6.24 16 26 C 0.02 0.14 9.81 113.37 1.11 1.25 16 27 C -0.16 -2.68 9.99 22.37 0.22 -2.46 16 28 C -0.08 -1.25 8.11 22.25 0.18 -1.07 16 29 H 0.06 0.73 7.98 -2.38 -0.02 0.71 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.08 1.40 8.11 -2.39 -0.02 1.38 16 33 H 0.11 1.32 4.47 -2.39 -0.01 1.31 16 34 H 0.10 2.67 8.07 -2.38 -0.02 2.65 16 35 H 0.07 2.36 7.37 -2.39 -0.02 2.35 16 36 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 37 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.37 17.02 5.53 -92.71 -0.51 16.50 16 39 H 0.26 16.10 8.31 -92.71 -0.77 15.33 16 40 H 0.07 1.10 6.12 -2.39 -0.01 1.09 16 41 H 0.09 1.17 6.66 -2.39 -0.02 1.15 16 42 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.06 1.49 8.04 -2.39 -0.02 1.47 16 44 H 0.07 1.45 8.07 -2.39 -0.02 1.43 16 45 H 0.14 1.51 8.06 -2.91 -0.02 1.48 16 46 H 0.15 1.29 6.30 -2.91 -0.02 1.27 16 47 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 48 H 0.06 0.36 7.66 -2.39 -0.02 0.34 16 49 H 0.06 0.34 7.66 -2.39 -0.02 0.32 16 50 H 0.13 1.97 8.06 -2.91 -0.02 1.94 16 51 H 0.14 1.96 8.04 -2.91 -0.02 1.94 16 Total: -1.00 -79.94 408.06 4.54 -75.40 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: 0.34 Total: 26.10 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: 6.90 Total: -1.02 kcal Atomic # 7 Polarization: -116.86 SS G_CDS: -3.59 Total: -120.45 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -1.02 Total: -28.31 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 1.90 Total: 48.27 kcal Total: -79.94 4.54 -75.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668648551.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.164 kcal (2) G-P(sol) polarization free energy of solvation -79.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds