Wall clock time and date at job start Tue Mar 31 2020 18:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47141 * 2 1 4 4 C 1.46502 * 119.99730 * 276.13347 * 3 2 1 5 5 C 1.53002 * 109.46978 * 269.99760 * 4 3 2 6 6 N 1.46504 * 109.46878 * 180.02562 * 5 4 3 7 7 C 1.36939 * 119.99606 * 180.02562 * 6 5 4 8 8 H 1.08001 * 120.00345 * 359.97438 * 7 6 5 9 9 C 1.38815 * 119.99719 * 180.02562 * 7 6 5 10 10 N 1.31612 * 120.00045 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99712 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47342 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47164 * 119.99756 * 11 9 7 14 14 H 1.48503 * 109.46613 * 239.99787 * 11 9 7 15 15 C 1.34776 * 119.99967 * 96.12903 * 3 2 1 16 16 O 1.21287 * 119.99570 * 186.46982 * 15 3 2 17 17 C 1.50698 * 120.00154 * 6.47611 * 15 3 2 18 18 H 1.08998 * 109.47112 * 49.16775 * 17 15 3 19 19 C 1.53007 * 109.46785 * 289.16725 * 17 15 3 20 20 C 1.52998 * 109.47028 * 169.17301 * 17 15 3 21 21 C 1.50705 * 109.46712 * 184.99802 * 20 17 15 22 22 C 1.38267 * 119.94097 * 270.25142 * 21 20 17 23 23 C 1.38145 * 120.05265 * 180.25721 * 22 21 20 24 24 C 1.38742 * 119.94317 * 359.47169 * 23 22 21 25 25 O 1.35900 * 120.05599 * 180.29807 * 24 23 22 26 26 C 1.42895 * 116.99932 * 179.97438 * 25 24 23 27 27 C 1.38732 * 119.88655 * 0.27375 * 24 23 22 28 28 C 1.38140 * 119.94755 * 0.02562 * 27 24 23 29 29 H 1.09010 * 109.47261 * 68.20435 * 1 2 3 30 30 H 1.08996 * 109.47377 * 188.20612 * 1 2 3 31 31 H 1.08999 * 109.47447 * 308.20480 * 1 2 3 32 32 H 1.09002 * 109.47025 * 240.00102 * 2 1 3 33 33 H 1.08994 * 109.47350 * 119.99917 * 2 1 3 34 34 H 1.08997 * 109.47653 * 29.99747 * 4 3 2 35 35 H 1.09000 * 109.47254 * 150.00051 * 4 3 2 36 36 H 1.09003 * 109.46726 * 300.00022 * 5 4 3 37 37 H 1.09000 * 109.46890 * 60.00068 * 5 4 3 38 38 H 0.97000 * 120.00175 * 359.97438 * 6 5 4 39 39 H 0.96996 * 120.00069 * 180.02562 * 10 9 7 40 40 H 1.08994 * 109.47156 * 185.30873 * 19 17 15 41 41 H 1.08992 * 109.47503 * 305.31328 * 19 17 15 42 42 H 1.09006 * 109.46535 * 65.31092 * 19 17 15 43 43 H 1.08999 * 109.47165 * 64.99794 * 20 17 15 44 44 H 1.09000 * 109.47078 * 304.99123 * 20 17 15 45 45 H 1.07991 * 119.97576 * 0.02626 * 22 21 20 46 46 H 1.07999 * 120.02826 * 179.73986 * 23 22 21 47 47 H 1.09004 * 109.46883 * 60.00300 * 26 25 24 48 48 H 1.08998 * 109.46776 * 179.97438 * 26 25 24 49 49 H 1.08996 * 109.47244 * 300.00246 * 26 25 24 50 50 H 1.07999 * 120.02592 * 180.02562 * 27 24 23 51 51 H 1.07996 * 119.97883 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1347 2.1170 -1.2615 5 6 3.5274 1.8950 -1.8547 6 7 3.6439 2.6313 -3.1160 7 6 4.8099 2.5818 -3.8324 8 1 5.6437 2.0003 -3.4675 9 6 4.9205 3.2798 -5.0272 10 7 3.9047 3.9888 -5.4716 11 14 6.5113 3.2128 -6.0041 12 1 7.4926 2.3537 -5.2940 13 1 6.2418 2.6482 -7.3509 14 1 7.0644 4.5839 -6.1438 15 6 2.3604 1.9750 1.1605 16 8 2.6522 3.1522 1.1764 17 6 2.3806 1.1764 2.4383 18 1 2.9389 0.2535 2.2812 19 6 0.9464 0.8407 2.8526 20 6 3.0514 1.9967 3.5419 21 6 3.1822 1.1545 4.7848 22 6 2.1657 1.1447 5.7219 23 6 2.2854 0.3776 6.8646 24 6 3.4222 -0.3919 7.0661 25 8 3.5398 -1.1520 8.1865 26 6 4.7371 -1.9191 8.3273 27 6 4.4384 -0.3844 6.1217 28 6 4.3165 0.3892 4.9837 29 1 -0.3634 0.3816 -0.9543 30 1 -0.3634 -1.0171 0.1467 31 1 -0.3634 0.6356 0.8075 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.3802 1.7590 -1.9620 35 1 1.9836 3.1806 -1.0771 36 1 4.2819 2.2532 -1.1543 37 1 3.6785 0.8314 -2.0392 38 1 2.8950 3.1532 -3.4439 39 1 3.9818 4.4762 -6.3066 40 1 0.9552 0.3457 3.8236 41 1 0.3628 1.7589 2.9180 42 1 0.4997 0.1783 2.1110 43 1 2.4452 2.8757 3.7607 44 1 4.0410 2.3111 3.2103 45 1 1.2790 1.7401 5.5623 46 1 1.4930 0.3736 7.5983 47 1 5.5980 -1.2505 8.3353 48 1 4.7028 -2.4778 9.2625 49 1 4.8241 -2.6135 7.4917 50 1 5.3241 -0.9828 6.2761 51 1 5.1071 0.3951 4.2480 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668648552.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:04 Heat of formation + Delta-G solvation = -39.157063 kcal Electronic energy + Delta-G solvation = -28607.819982 eV Core-core repulsion = 24700.927276 eV Total energy + Delta-G solvation = -3906.892706 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.63286 -40.05157 -38.10265 -36.22949 -35.07813 -34.26839 -31.83129 -31.43032 -30.46272 -30.30244 -28.08836 -27.64601 -26.31911 -24.31022 -23.52877 -23.07530 -22.56657 -21.54836 -20.72444 -18.58150 -18.43435 -17.39542 -17.08919 -16.54143 -16.19240 -16.06641 -15.56496 -15.28789 -14.69645 -14.56945 -14.38265 -14.15223 -13.96735 -13.79993 -13.61381 -13.46171 -13.21742 -12.93150 -12.84364 -12.69633 -12.56076 -12.42936 -12.26811 -11.81782 -11.65834 -11.42635 -11.29226 -11.22438 -11.16163 -10.97343 -10.93028 -10.86267 -10.83504 -10.64552 -10.06198 -9.75672 -9.49365 -9.25458 -8.85981 -8.46181 -8.34641 -6.91071 -5.74435 -3.03493 1.06070 1.13180 2.79321 2.92831 3.09884 3.45080 3.48234 3.50690 3.52984 4.36598 4.47109 4.57656 4.62838 4.68495 4.74259 4.74994 4.80499 4.84797 4.94850 5.05384 5.10686 5.11628 5.16563 5.22350 5.28310 5.34688 5.52429 5.54525 5.57887 5.64877 5.66331 5.70561 5.72073 5.79118 5.87181 5.91714 5.99747 6.06120 6.07504 6.09612 6.19009 6.20050 6.44255 6.48609 6.61243 6.77849 6.94712 7.06351 7.57986 7.72338 8.35866 8.44296 9.55017 10.11662 10.46733 11.48551 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016480 B = 0.002101 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.663435 B =13323.216340 C =14225.767536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.100 3.900 3 N -0.607 5.607 4 C 0.107 3.893 5 C 0.144 3.856 6 N -0.730 5.730 7 C -0.237 4.237 8 H 0.070 0.930 9 C -0.015 4.015 10 N -0.933 5.933 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 C 0.516 3.484 16 O -0.534 6.534 17 C -0.102 4.102 18 H 0.094 0.906 19 C -0.163 4.163 20 C -0.059 4.059 21 C -0.111 4.111 22 C -0.075 4.075 23 C -0.151 4.151 24 C 0.119 3.881 25 O -0.320 6.320 26 C 0.028 3.972 27 C -0.205 4.205 28 C -0.076 4.076 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.021 0.979 37 H 0.017 0.983 38 H 0.384 0.616 39 H 0.255 0.745 40 H 0.069 0.931 41 H 0.060 0.940 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.130 0.870 46 H 0.129 0.871 47 H 0.055 0.945 48 H 0.099 0.901 49 H 0.055 0.945 50 H 0.126 0.874 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.097 -14.010 27.283 31.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.023 4.023 3 N -0.340 5.340 4 C -0.016 4.016 5 C 0.015 3.985 6 N -0.375 5.375 7 C -0.368 4.368 8 H 0.088 0.912 9 C -0.211 4.211 10 N -0.582 5.582 11 Si 0.740 3.260 12 H -0.206 1.206 13 H -0.219 1.219 14 H -0.218 1.218 15 C 0.304 3.696 16 O -0.410 6.410 17 C -0.124 4.124 18 H 0.112 0.888 19 C -0.220 4.220 20 C -0.097 4.097 21 C -0.111 4.111 22 C -0.093 4.093 23 C -0.170 4.170 24 C 0.074 3.926 25 O -0.234 6.234 26 C -0.068 4.068 27 C -0.224 4.224 28 C -0.094 4.094 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.039 0.961 37 H 0.035 0.965 38 H 0.217 0.783 39 H 0.065 0.935 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.095 0.905 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.148 0.852 46 H 0.147 0.853 47 H 0.073 0.927 48 H 0.117 0.883 49 H 0.074 0.926 50 H 0.144 0.856 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.898 -13.445 27.394 31.080 hybrid contribution 0.954 -0.069 -0.892 1.308 sum -4.944 -13.514 26.501 30.156 Atomic orbital electron populations 1.22408 0.95985 1.02252 1.03039 1.21646 0.94381 0.82859 1.03427 1.47913 1.65013 1.14148 1.06920 1.21675 0.98666 0.97815 0.83423 1.20900 0.93593 0.95147 0.88847 1.42220 1.15894 1.58152 1.21227 1.19253 0.91846 1.24498 1.01221 0.91170 1.24756 0.97838 1.00152 0.98342 1.69668 1.30195 1.35607 1.22686 0.86092 0.82839 0.77232 0.79885 1.20576 1.21856 1.21815 1.20594 0.76509 0.87733 0.84807 1.90723 1.48024 1.15993 1.86242 1.21248 0.98976 0.99467 0.92673 0.88816 1.22264 0.94278 1.02596 1.02898 1.20365 1.02336 0.96665 0.90351 1.19824 0.94706 0.99577 0.97023 1.20914 0.98361 0.97588 0.92431 1.20418 0.97311 0.99701 0.99522 1.19045 0.94841 0.92411 0.86323 1.86057 1.41036 1.57328 1.38983 1.23046 0.86000 0.94781 1.02934 1.21223 0.99814 1.04918 0.96452 1.20908 0.97361 0.94704 0.96399 0.91974 0.91537 0.91545 0.90126 0.90116 0.90653 0.89680 0.96139 0.96498 0.78262 0.93547 0.91165 0.92104 0.90499 0.90047 0.90235 0.85213 0.85328 0.92651 0.88307 0.92616 0.85573 0.85617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.54 9.15 37.16 0.34 -1.20 16 2 C 0.10 1.02 5.59 -4.04 -0.02 1.00 16 3 N -0.61 -8.55 2.47 -173.69 -0.43 -8.98 16 4 C 0.11 1.87 5.59 -4.04 -0.02 1.85 16 5 C 0.14 3.08 6.58 -4.04 -0.03 3.05 16 6 N -0.73 -19.32 5.60 -59.90 -0.34 -19.65 16 7 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 8 H 0.07 1.99 7.83 -52.49 -0.41 1.57 16 9 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 10 N -0.93 -28.81 13.06 55.49 0.72 -28.09 16 11 Si 0.91 22.90 29.55 -169.99 -5.02 17.87 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 14 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 15 C 0.52 7.62 6.96 -10.99 -0.08 7.54 16 16 O -0.53 -10.21 15.59 5.55 0.09 -10.12 16 17 C -0.10 -1.07 1.87 -91.77 -0.17 -1.25 16 18 H 0.09 0.88 7.10 -51.93 -0.37 0.51 16 19 C -0.16 -1.37 8.03 37.16 0.30 -1.07 16 20 C -0.06 -0.64 4.14 -27.88 -0.12 -0.75 16 21 C -0.11 -1.04 4.73 -104.60 -0.49 -1.54 16 22 C -0.07 -0.64 7.85 -39.60 -0.31 -0.95 16 23 C -0.15 -1.33 9.99 -39.43 -0.39 -1.73 16 24 C 0.12 1.10 6.69 -39.21 -0.26 0.84 16 25 O -0.32 -2.83 10.50 -19.43 -0.20 -3.04 16 26 C 0.03 0.14 9.81 101.05 0.99 1.13 16 27 C -0.21 -1.77 9.04 -39.43 -0.36 -2.12 16 28 C -0.08 -0.69 9.69 -39.61 -0.38 -1.07 16 29 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.58 6.02 -51.93 -0.31 0.26 16 32 H 0.08 0.84 8.12 -51.93 -0.42 0.42 16 33 H 0.08 0.66 5.34 -51.93 -0.28 0.39 16 34 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 35 H 0.08 1.67 7.34 -51.93 -0.38 1.29 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.38 10.55 7.67 -40.82 -0.31 10.24 16 39 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 40 H 0.07 0.52 5.87 -51.93 -0.31 0.22 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.58 3.53 -51.93 -0.18 0.39 16 43 H 0.08 0.92 8.06 -51.93 -0.42 0.50 16 44 H 0.08 0.95 8.05 -51.93 -0.42 0.53 16 45 H 0.13 0.92 7.96 -52.49 -0.42 0.50 16 46 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 47 H 0.05 0.25 7.66 -51.93 -0.40 -0.15 16 48 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 50 H 0.13 0.84 6.30 -52.49 -0.33 0.51 16 51 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 405.17 15.07 6.11 6.11 Total: -1.00 -35.02 405.17 -8.62 -43.64 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -8.29 Total: 6.09 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -1.25 Total: -3.83 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: -0.04 Total: -56.73 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -0.12 Total: -13.16 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.02 -8.62 -43.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668648552.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.485 kcal (2) G-P(sol) polarization free energy of solvation -35.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds