Wall clock time and date at job start Tue Mar 31 2020 18:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47141 * 2 1 4 4 C 1.46502 * 119.99730 * 276.13347 * 3 2 1 5 5 C 1.53002 * 109.46978 * 269.99760 * 4 3 2 6 6 N 1.46504 * 109.46878 * 180.02562 * 5 4 3 7 7 C 1.36939 * 119.99606 * 180.02562 * 6 5 4 8 8 H 1.08001 * 120.00345 * 359.97438 * 7 6 5 9 9 C 1.38815 * 119.99719 * 180.02562 * 7 6 5 10 10 N 1.31612 * 120.00045 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99712 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47342 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47164 * 119.99756 * 11 9 7 14 14 H 1.48503 * 109.46613 * 239.99787 * 11 9 7 15 15 C 1.34776 * 119.99967 * 96.12903 * 3 2 1 16 16 O 1.21287 * 119.99570 * 186.46982 * 15 3 2 17 17 C 1.50698 * 120.00154 * 6.47611 * 15 3 2 18 18 H 1.08998 * 109.47112 * 49.16775 * 17 15 3 19 19 C 1.53007 * 109.46785 * 289.16725 * 17 15 3 20 20 C 1.52998 * 109.47028 * 169.17301 * 17 15 3 21 21 C 1.50705 * 109.46712 * 184.99802 * 20 17 15 22 22 C 1.38267 * 119.94097 * 270.25142 * 21 20 17 23 23 C 1.38145 * 120.05265 * 180.25721 * 22 21 20 24 24 C 1.38742 * 119.94317 * 359.47169 * 23 22 21 25 25 O 1.35900 * 120.05599 * 180.29807 * 24 23 22 26 26 C 1.42895 * 116.99932 * 179.97438 * 25 24 23 27 27 C 1.38732 * 119.88655 * 0.27375 * 24 23 22 28 28 C 1.38140 * 119.94755 * 0.02562 * 27 24 23 29 29 H 1.09010 * 109.47261 * 68.20435 * 1 2 3 30 30 H 1.08996 * 109.47377 * 188.20612 * 1 2 3 31 31 H 1.08999 * 109.47447 * 308.20480 * 1 2 3 32 32 H 1.09002 * 109.47025 * 240.00102 * 2 1 3 33 33 H 1.08994 * 109.47350 * 119.99917 * 2 1 3 34 34 H 1.08997 * 109.47653 * 29.99747 * 4 3 2 35 35 H 1.09000 * 109.47254 * 150.00051 * 4 3 2 36 36 H 1.09003 * 109.46726 * 300.00022 * 5 4 3 37 37 H 1.09000 * 109.46890 * 60.00068 * 5 4 3 38 38 H 0.97000 * 120.00175 * 359.97438 * 6 5 4 39 39 H 0.96996 * 120.00069 * 180.02562 * 10 9 7 40 40 H 1.08994 * 109.47156 * 185.30873 * 19 17 15 41 41 H 1.08992 * 109.47503 * 305.31328 * 19 17 15 42 42 H 1.09006 * 109.46535 * 65.31092 * 19 17 15 43 43 H 1.08999 * 109.47165 * 64.99794 * 20 17 15 44 44 H 1.09000 * 109.47078 * 304.99123 * 20 17 15 45 45 H 1.07991 * 119.97576 * 0.02626 * 22 21 20 46 46 H 1.07999 * 120.02826 * 179.73986 * 23 22 21 47 47 H 1.09004 * 109.46883 * 60.00300 * 26 25 24 48 48 H 1.08998 * 109.46776 * 179.97438 * 26 25 24 49 49 H 1.08996 * 109.47244 * 300.00246 * 26 25 24 50 50 H 1.07999 * 120.02592 * 180.02562 * 27 24 23 51 51 H 1.07996 * 119.97883 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1347 2.1170 -1.2615 5 6 3.5274 1.8950 -1.8547 6 7 3.6439 2.6313 -3.1160 7 6 4.8099 2.5818 -3.8324 8 1 5.6437 2.0003 -3.4675 9 6 4.9205 3.2798 -5.0272 10 7 3.9047 3.9888 -5.4716 11 14 6.5113 3.2128 -6.0041 12 1 7.4926 2.3537 -5.2940 13 1 6.2418 2.6482 -7.3509 14 1 7.0644 4.5839 -6.1438 15 6 2.3604 1.9750 1.1605 16 8 2.6522 3.1522 1.1764 17 6 2.3806 1.1764 2.4383 18 1 2.9389 0.2535 2.2812 19 6 0.9464 0.8407 2.8526 20 6 3.0514 1.9967 3.5419 21 6 3.1822 1.1545 4.7848 22 6 2.1657 1.1447 5.7219 23 6 2.2854 0.3776 6.8646 24 6 3.4222 -0.3919 7.0661 25 8 3.5398 -1.1520 8.1865 26 6 4.7371 -1.9191 8.3273 27 6 4.4384 -0.3844 6.1217 28 6 4.3165 0.3892 4.9837 29 1 -0.3634 0.3816 -0.9543 30 1 -0.3634 -1.0171 0.1467 31 1 -0.3634 0.6356 0.8075 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.3802 1.7590 -1.9620 35 1 1.9836 3.1806 -1.0771 36 1 4.2819 2.2532 -1.1543 37 1 3.6785 0.8314 -2.0392 38 1 2.8950 3.1532 -3.4439 39 1 3.9818 4.4762 -6.3066 40 1 0.9552 0.3457 3.8236 41 1 0.3628 1.7589 2.9180 42 1 0.4997 0.1783 2.1110 43 1 2.4452 2.8757 3.7607 44 1 4.0410 2.3111 3.2103 45 1 1.2790 1.7401 5.5623 46 1 1.4930 0.3736 7.5983 47 1 5.5980 -1.2505 8.3353 48 1 4.7028 -2.4778 9.2625 49 1 4.8241 -2.6135 7.4917 50 1 5.3241 -0.9828 6.2761 51 1 5.1071 0.3951 4.2480 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668648552.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:03 Heat of formation + Delta-G solvation = -60.509384 kcal Electronic energy + Delta-G solvation = -28608.745888 eV Core-core repulsion = 24700.927276 eV Total energy + Delta-G solvation = -3907.818612 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.51973 -40.92118 -38.79930 -37.57183 -36.51926 -35.53337 -33.56226 -32.11439 -31.73232 -31.09297 -29.28714 -28.56915 -27.00293 -26.00302 -24.51462 -24.16460 -23.49138 -22.84359 -21.66534 -19.76467 -19.10667 -19.05045 -18.34608 -17.45649 -17.18332 -16.76201 -16.59708 -16.33007 -16.12449 -15.57923 -15.51256 -15.22863 -15.12108 -15.05230 -14.70307 -14.58759 -14.41584 -14.09541 -13.83824 -13.60833 -13.26552 -13.21729 -13.07960 -12.93045 -12.79914 -12.75152 -12.58821 -12.39928 -12.27278 -12.19664 -12.10533 -11.95726 -11.87536 -11.84440 -11.63280 -11.55751 -11.00964 -10.69927 -9.90981 -9.70627 -9.08603 -9.01745 -7.99550 -5.30529 0.41357 0.44573 1.44828 1.47046 1.56956 1.62934 1.96541 2.41653 2.54266 2.79960 3.33559 3.43178 3.82660 3.91294 3.94440 3.99611 4.02632 4.08217 4.15316 4.20621 4.23961 4.31855 4.40637 4.41725 4.43592 4.49927 4.52203 4.54562 4.58459 4.68574 4.76475 4.82043 4.86835 4.89829 4.95827 5.00433 5.05272 5.09802 5.12709 5.20005 5.25800 5.34729 5.42183 5.42938 5.50134 5.58054 5.74169 5.84494 6.21883 6.44895 6.47560 7.19172 7.27881 7.99541 8.24962 9.23991 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016480 B = 0.002101 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.663435 B =13323.216340 C =14225.767536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.093 3.907 3 N -0.604 5.604 4 C 0.122 3.878 5 C 0.150 3.850 6 N -0.743 5.743 7 C -0.250 4.250 8 H 0.074 0.926 9 C -0.075 4.075 10 N -0.968 5.968 11 Si 0.979 3.021 12 H -0.266 1.266 13 H -0.287 1.287 14 H -0.293 1.293 15 C 0.509 3.491 16 O -0.586 6.586 17 C -0.091 4.091 18 H 0.112 0.888 19 C -0.157 4.157 20 C -0.054 4.054 21 C -0.118 4.118 22 C -0.074 4.074 23 C -0.159 4.159 24 C 0.110 3.890 25 O -0.336 6.336 26 C 0.019 3.981 27 C -0.208 4.208 28 C -0.083 4.083 29 H 0.048 0.952 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.057 0.943 36 H -0.001 1.001 37 H 0.031 0.969 38 H 0.375 0.625 39 H 0.253 0.747 40 H 0.085 0.915 41 H 0.053 0.947 42 H 0.090 0.910 43 H 0.070 0.930 44 H 0.059 0.941 45 H 0.143 0.857 46 H 0.140 0.860 47 H 0.061 0.939 48 H 0.117 0.883 49 H 0.064 0.936 50 H 0.143 0.857 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.057 -16.537 28.542 33.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.029 4.029 3 N -0.336 5.336 4 C -0.002 4.002 5 C 0.023 3.977 6 N -0.386 5.386 7 C -0.382 4.382 8 H 0.092 0.908 9 C -0.267 4.267 10 N -0.618 5.618 11 Si 0.807 3.193 12 H -0.191 1.191 13 H -0.214 1.214 14 H -0.220 1.220 15 C 0.299 3.701 16 O -0.466 6.466 17 C -0.113 4.113 18 H 0.130 0.870 19 C -0.214 4.214 20 C -0.091 4.091 21 C -0.118 4.118 22 C -0.091 4.091 23 C -0.178 4.178 24 C 0.065 3.935 25 O -0.251 6.251 26 C -0.075 4.075 27 C -0.226 4.226 28 C -0.102 4.102 29 H 0.067 0.933 30 H 0.113 0.887 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.125 0.875 34 H 0.108 0.892 35 H 0.076 0.924 36 H 0.017 0.983 37 H 0.048 0.952 38 H 0.207 0.793 39 H 0.062 0.938 40 H 0.104 0.896 41 H 0.072 0.928 42 H 0.109 0.891 43 H 0.089 0.911 44 H 0.078 0.922 45 H 0.161 0.839 46 H 0.157 0.843 47 H 0.079 0.921 48 H 0.136 0.864 49 H 0.082 0.918 50 H 0.161 0.839 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.865 -16.039 28.690 33.388 hybrid contribution 0.956 0.674 -1.190 1.669 sum -4.910 -15.365 27.500 31.882 Atomic orbital electron populations 1.22381 0.94468 1.03984 1.02406 1.21987 0.95613 0.80431 1.04820 1.48019 1.64672 1.15526 1.05411 1.21268 0.96645 0.97009 0.85287 1.20945 0.95357 0.94835 0.86606 1.42409 1.15050 1.58590 1.22585 1.19632 0.92702 1.24227 1.01605 0.90823 1.25652 1.01368 1.00131 0.99578 1.69825 1.32289 1.36588 1.23079 0.85001 0.78924 0.77107 0.78252 1.19066 1.21392 1.21981 1.21446 0.75113 0.87434 0.86092 1.90698 1.50320 1.18521 1.87091 1.21257 1.00857 0.99081 0.90058 0.87024 1.22253 0.92357 1.02693 1.04059 1.20242 1.01026 0.96704 0.91177 1.19703 0.95457 0.99927 0.96717 1.21035 0.98574 0.97460 0.92076 1.20627 0.97706 0.99638 0.99788 1.19257 0.95114 0.92541 0.86637 1.86039 1.42683 1.57553 1.38779 1.23306 0.85055 0.94868 1.04320 1.21400 1.00352 1.04883 0.96000 1.21040 0.97423 0.94816 0.96875 0.93251 0.88679 0.91486 0.90032 0.87454 0.89161 0.92401 0.98279 0.95150 0.79299 0.93788 0.89620 0.92782 0.89144 0.91122 0.92205 0.83922 0.84255 0.92057 0.86441 0.91784 0.83894 0.85114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.55 9.15 71.98 0.66 -1.89 16 2 C 0.09 1.67 5.59 86.38 0.48 2.16 16 3 N -0.60 -16.71 2.47 -821.81 -2.03 -18.75 16 4 C 0.12 4.34 5.59 86.38 0.48 4.83 16 5 C 0.15 6.54 6.58 86.38 0.57 7.11 16 6 N -0.74 -40.14 5.60 -343.43 -1.92 -42.06 16 7 C -0.25 -14.63 9.99 84.03 0.84 -13.79 16 8 H 0.07 4.16 7.83 -2.91 -0.02 4.14 16 9 C -0.07 -4.44 5.50 84.86 0.47 -3.97 16 10 N -0.97 -60.66 13.06 21.65 0.28 -60.38 16 11 Si 0.98 47.21 29.55 68.60 2.03 49.24 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 13 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 14 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 15 C 0.51 15.11 6.96 87.66 0.61 15.72 16 16 O -0.59 -23.46 15.59 -3.05 -0.05 -23.51 16 17 C -0.09 -1.81 1.87 -11.54 -0.02 -1.84 16 18 H 0.11 1.84 7.10 -2.39 -0.02 1.82 16 19 C -0.16 -2.27 8.03 71.98 0.58 -1.69 16 20 C -0.05 -1.14 4.14 29.85 0.12 -1.02 16 21 C -0.12 -2.09 4.73 -19.85 -0.09 -2.18 16 22 C -0.07 -1.15 7.85 22.25 0.17 -0.98 16 23 C -0.16 -2.55 9.99 22.37 0.22 -2.33 16 24 C 0.11 1.86 6.69 22.51 0.15 2.01 16 25 O -0.34 -5.40 10.50 -92.43 -0.97 -6.37 16 26 C 0.02 0.16 9.81 113.37 1.11 1.27 16 27 C -0.21 -3.23 9.04 22.36 0.20 -3.03 16 28 C -0.08 -1.41 9.69 22.25 0.22 -1.20 16 29 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.07 0.99 6.02 -2.39 -0.01 0.98 16 32 H 0.08 1.50 8.12 -2.39 -0.02 1.48 16 33 H 0.11 1.38 5.34 -2.39 -0.01 1.37 16 34 H 0.09 2.93 8.07 -2.39 -0.02 2.91 16 35 H 0.06 2.39 7.34 -2.39 -0.02 2.37 16 36 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 37 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.38 21.26 7.67 -92.71 -0.71 20.55 16 39 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 40 H 0.09 1.02 5.87 -2.39 -0.01 1.01 16 41 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.09 1.06 3.53 -2.38 -0.01 1.05 16 43 H 0.07 1.63 8.06 -2.39 -0.02 1.61 16 44 H 0.06 1.49 8.05 -2.39 -0.02 1.47 16 45 H 0.14 1.78 7.96 -2.91 -0.02 1.76 16 46 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 47 H 0.06 0.44 7.66 -2.38 -0.02 0.42 16 48 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 49 H 0.06 0.43 7.66 -2.39 -0.02 0.41 16 50 H 0.14 1.63 6.30 -2.91 -0.02 1.61 16 51 H 0.13 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -77.14 405.17 4.32 -72.81 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: 0.21 Total: 29.83 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: 6.77 Total: -0.82 kcal Atomic # 7 Polarization: -117.51 SS G_CDS: -3.67 Total: -121.18 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: -1.02 Total: -29.87 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Total: -77.14 4.32 -72.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668648552.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.304 kcal (2) G-P(sol) polarization free energy of solvation -77.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds