Wall clock time and date at job start Tue Mar 31 2020 18:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.47264 * 2 1 4 4 C 1.53002 * 109.46858 * 119.99729 * 2 1 3 5 5 C 1.50703 * 109.47423 * 294.99746 * 4 2 1 6 6 C 1.34514 * 125.78253 * 89.71289 * 5 4 2 7 7 C 1.41389 * 106.83294 * 179.89203 * 6 5 4 8 8 C 1.34505 * 106.84334 * 0.37805 * 7 6 5 9 9 O 1.34295 * 125.79083 * 270.03129 * 5 4 2 10 10 C 1.50701 * 109.47346 * 239.99630 * 2 1 3 11 11 O 1.21283 * 120.00052 * 240.00138 * 10 2 1 12 12 N 1.34770 * 119.99922 * 59.99959 * 10 2 1 13 13 C 1.46500 * 120.00256 * 180.02562 * 12 10 2 14 14 H 1.08998 * 109.46845 * 325.00694 * 13 12 10 15 15 C 1.53006 * 109.47249 * 84.99846 * 13 12 10 16 16 C 1.52997 * 109.47164 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.46978 * 299.99874 * 16 15 13 18 18 H 1.08992 * 109.47056 * 300.00064 * 17 16 15 19 19 C 1.52997 * 109.46978 * 180.02562 * 17 16 15 20 20 N 1.46507 * 109.47321 * 65.00089 * 19 17 16 21 21 C 1.36929 * 120.00158 * 179.97438 * 20 19 17 22 22 H 1.07995 * 120.00290 * 0.02562 * 21 20 19 23 23 C 1.38810 * 119.99945 * 180.02562 * 21 20 19 24 24 N 1.31626 * 119.99991 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00311 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47084 * 59.99742 * 25 23 21 27 27 H 1.48500 * 109.47270 * 180.02562 * 25 23 21 28 28 H 1.48505 * 109.46820 * 299.99776 * 25 23 21 29 29 C 1.52996 * 109.46891 * 60.00410 * 17 16 15 30 30 C 1.52997 * 109.47473 * 205.00145 * 13 12 10 31 31 H 1.09006 * 109.47048 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47261 * 299.99695 * 1 2 3 33 33 H 1.09000 * 109.46920 * 60.00565 * 1 2 3 34 34 H 1.09002 * 109.47267 * 55.00336 * 4 2 1 35 35 H 1.09001 * 109.47055 * 175.00005 * 4 2 1 36 36 H 1.07998 * 126.58470 * 0.03208 * 6 5 4 37 37 H 1.08002 * 126.57522 * 180.12193 * 7 6 5 38 38 H 1.08004 * 125.78832 * 179.79118 * 8 7 6 39 39 H 0.97005 * 120.00370 * 0.02562 * 12 10 2 40 40 H 1.09001 * 109.47002 * 60.00085 * 15 13 12 41 41 H 1.09000 * 109.47050 * 300.00351 * 15 13 12 42 42 H 1.09002 * 109.47045 * 180.02562 * 16 15 13 43 43 H 1.09001 * 109.47375 * 59.99966 * 16 15 13 44 44 H 1.08994 * 109.47445 * 185.00212 * 19 17 16 45 45 H 1.09000 * 109.47459 * 305.00519 * 19 17 16 46 46 H 0.97003 * 119.99307 * 0.02562 * 20 19 17 47 47 H 0.97003 * 119.99900 * 180.02562 * 24 23 21 48 48 H 1.09004 * 109.47368 * 179.97438 * 29 17 16 49 49 H 1.09001 * 109.47372 * 59.99964 * 29 17 16 50 50 H 1.09002 * 109.47153 * 59.99757 * 30 13 12 51 51 H 1.09001 * 109.46832 * 299.99948 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0571 2.4767 6 6 0.4984 -0.0971 3.1690 7 6 0.5391 0.8277 4.2378 8 6 1.7006 1.4973 4.1297 9 8 2.3641 1.0264 3.0611 10 6 2.0324 -0.7105 -1.2304 11 8 2.7297 -1.6966 -1.1191 12 7 1.7068 -0.2501 -2.4545 13 6 2.1947 -0.9411 -3.6506 14 1 3.1937 -1.3337 -3.4613 15 6 1.2502 -2.0947 -3.9942 16 6 1.7601 -2.8167 -5.2430 17 6 1.8121 -1.8340 -6.4146 18 1 0.8132 -1.4415 -6.6043 19 6 2.3214 -2.5562 -7.6636 20 7 1.3556 -3.5833 -8.0619 21 6 1.5990 -4.3626 -9.1611 22 1 2.5032 -4.2205 -9.7343 23 6 0.6836 -5.3354 -9.5387 24 7 -0.4186 -5.5083 -8.8404 25 14 1.0160 -6.3991 -11.0379 26 1 2.2796 -7.1534 -10.8393 27 1 -0.1062 -7.3532 -11.2266 28 1 1.1385 -5.5358 -12.2400 29 6 2.7567 -0.6805 -6.0711 30 6 2.2464 0.0418 -4.8220 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.6053 -1.7198 1.2952 35 1 3.1263 -0.7995 1.2057 36 1 -0.2967 -0.7949 2.9517 37 1 -0.2190 0.9718 4.9933 38 1 2.0420 2.2806 4.7903 39 1 1.1494 0.5388 -2.5436 40 1 0.2511 -1.7022 -4.1835 41 1 1.2133 -2.7950 -3.1597 42 1 1.0869 -3.6383 -5.4880 43 1 2.7591 -3.2092 -5.0534 44 1 2.4430 -1.8379 -8.4744 45 1 3.2812 -3.0249 -7.4464 46 1 0.5432 -3.7106 -7.5472 47 1 -1.0581 -6.1883 -9.1041 48 1 2.7942 0.0194 -6.9059 49 1 3.7557 -1.0731 -5.8814 50 1 2.9193 0.8637 -4.5773 51 1 1.2473 0.4343 -5.0113 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672987359.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:56 Heat of formation + Delta-G solvation = -43.456829 kcal Electronic energy + Delta-G solvation = -28335.366976 eV Core-core repulsion = 24428.287818 eV Total energy + Delta-G solvation = -3907.079158 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.91899 -40.34863 -38.45219 -35.55755 -35.14216 -33.64560 -33.18656 -31.39926 -30.63004 -30.28445 -28.84608 -26.98256 -25.27670 -23.78173 -22.81951 -22.25307 -22.04433 -20.84728 -20.60370 -20.13286 -19.45796 -17.84999 -17.23244 -16.99192 -16.51541 -16.12971 -15.65736 -14.98384 -14.70920 -14.69049 -14.31939 -14.10322 -13.90369 -13.72449 -13.30276 -13.18340 -13.14076 -13.07379 -12.92924 -12.76556 -12.35359 -12.24482 -12.15933 -11.91777 -11.84662 -11.68607 -11.43454 -10.99487 -10.97131 -10.88696 -10.72566 -10.33396 -10.23809 -10.15226 -10.02821 -9.99516 -9.70852 -9.56136 -9.06491 -8.81418 -8.78249 -6.85759 -5.71949 -2.99732 1.37896 2.26843 2.47184 2.62194 3.05402 3.47113 3.51180 3.52381 4.22676 4.35175 4.50895 4.60712 4.62925 4.69768 4.73789 4.79903 4.85978 4.95813 5.09873 5.23684 5.31045 5.33380 5.36586 5.38104 5.49343 5.56203 5.58188 5.62010 5.62645 5.64628 5.67858 5.72087 5.77630 5.82253 5.98382 6.08185 6.13025 6.16897 6.28114 6.29238 6.30454 6.43912 6.51224 6.61218 6.78320 6.81155 6.91092 7.01575 7.34522 7.73954 8.06945 8.47548 9.58374 10.17919 10.52544 11.51034 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.028529 B = 0.001742 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.222809 B =16071.479796 C =16571.748259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.107 4.107 3 H 0.099 0.901 4 C -0.023 4.023 5 C -0.005 4.005 6 C -0.209 4.209 7 C -0.213 4.213 8 C -0.046 4.046 9 O -0.176 6.176 10 C 0.518 3.482 11 O -0.537 6.537 12 N -0.724 5.724 13 C 0.144 3.856 14 H 0.087 0.913 15 C -0.125 4.125 16 C -0.107 4.107 17 C -0.095 4.095 18 H 0.069 0.931 19 C 0.157 3.843 20 N -0.732 5.732 21 C -0.238 4.238 22 H 0.069 0.931 23 C -0.015 4.015 24 N -0.935 5.935 25 Si 0.907 3.093 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.287 1.287 29 C -0.107 4.107 30 C -0.122 4.122 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.201 0.799 39 H 0.398 0.602 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.017 0.983 45 H 0.018 0.982 46 H 0.384 0.616 47 H 0.255 0.745 48 H 0.066 0.934 49 H 0.064 0.936 50 H 0.063 0.937 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.129 18.604 25.214 31.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.129 4.129 3 H 0.117 0.883 4 C -0.060 4.060 5 C -0.055 4.055 6 C -0.228 4.228 7 C -0.233 4.233 8 C -0.114 4.114 9 O -0.072 6.072 10 C 0.304 3.696 11 O -0.413 6.413 12 N -0.374 5.374 13 C 0.040 3.960 14 H 0.106 0.894 15 C -0.164 4.164 16 C -0.145 4.145 17 C -0.113 4.113 18 H 0.088 0.912 19 C 0.029 3.971 20 N -0.376 5.376 21 C -0.369 4.369 22 H 0.087 0.913 23 C -0.211 4.211 24 N -0.584 5.584 25 Si 0.738 3.262 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.146 4.146 30 C -0.160 4.160 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.120 0.880 35 H 0.109 0.891 36 H 0.166 0.834 37 H 0.165 0.835 38 H 0.218 0.782 39 H 0.232 0.768 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.079 0.921 44 H 0.035 0.965 45 H 0.036 0.964 46 H 0.217 0.783 47 H 0.065 0.935 48 H 0.085 0.915 49 H 0.083 0.917 50 H 0.082 0.918 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.996 17.903 25.033 30.922 hybrid contribution -0.709 -0.234 -0.508 0.903 sum 2.287 17.669 24.525 30.313 Atomic orbital electron populations 1.21883 0.92376 1.03260 1.03105 1.21282 0.98149 1.00980 0.92446 0.88262 1.19941 1.03374 0.96852 0.85854 1.22427 0.92137 0.92948 0.98002 1.21635 0.99382 1.03944 0.97840 1.21854 0.99574 0.99984 1.01843 1.24027 0.93738 1.02407 0.91199 1.84031 1.44496 1.43034 1.35686 1.20449 0.80016 0.84568 0.84586 1.90733 1.37766 1.26074 1.86745 1.46140 1.53672 1.31899 1.05725 1.21106 0.98966 0.92744 0.83138 0.89449 1.21915 0.98732 0.97033 0.98731 1.21490 1.01940 0.98292 0.92761 1.21348 0.99267 0.94984 0.95749 0.91222 1.20684 0.93037 0.90788 0.92587 1.42373 1.22849 1.39476 1.32891 1.19203 1.03544 1.11010 1.03171 0.91322 1.24728 0.97006 0.99912 0.99458 1.69652 1.11023 1.36614 1.41083 0.86268 0.76946 0.80202 0.82783 1.21316 1.21731 1.21345 1.21477 0.99458 0.97416 0.96219 1.21793 1.01874 0.97623 0.94747 0.91638 0.90961 0.91834 0.87958 0.89060 0.83417 0.83530 0.78228 0.76814 0.92012 0.91873 0.90466 0.92134 0.96539 0.96416 0.78254 0.93548 0.91496 0.91746 0.91794 0.91487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 8.79 37.16 0.33 -0.61 16 2 C -0.11 -0.82 2.71 -91.77 -0.25 -1.07 16 3 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.02 -0.19 4.57 -27.88 -0.13 -0.32 16 5 C 0.00 -0.04 6.06 -35.62 -0.22 -0.26 16 6 C -0.21 -1.64 9.38 -39.70 -0.37 -2.01 16 7 C -0.21 -1.50 10.91 -39.70 -0.43 -1.93 16 8 C -0.05 -0.31 12.09 29.41 0.36 0.04 16 9 O -0.18 -1.60 10.65 5.72 0.06 -1.54 16 10 C 0.52 5.50 7.12 -10.99 -0.08 5.42 16 11 O -0.54 -7.91 15.58 5.55 0.09 -7.82 16 12 N -0.72 -6.70 4.97 -53.81 -0.27 -6.97 16 13 C 0.14 1.64 2.45 -67.93 -0.17 1.48 16 14 H 0.09 1.17 7.58 -51.93 -0.39 0.78 16 15 C -0.13 -1.68 5.49 -26.73 -0.15 -1.83 16 16 C -0.11 -1.71 5.08 -26.73 -0.14 -1.84 16 17 C -0.09 -1.50 2.22 -90.62 -0.20 -1.70 16 18 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 19 C 0.16 3.18 5.65 -4.04 -0.02 3.16 16 20 N -0.73 -18.75 5.33 -59.91 -0.32 -19.07 16 21 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 22 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 23 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 24 N -0.93 -28.59 13.06 55.49 0.72 -27.86 16 25 Si 0.91 22.74 29.55 -169.99 -5.02 17.72 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 29 C -0.11 -1.32 5.21 -26.71 -0.14 -1.46 16 30 C -0.12 -1.23 5.39 -26.71 -0.14 -1.38 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.43 6.40 -51.93 -0.33 0.10 16 33 H 0.06 0.33 7.56 -51.93 -0.39 -0.06 16 34 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.09 0.85 7.95 -51.93 -0.41 0.44 16 36 H 0.15 0.97 8.06 -52.49 -0.42 0.54 16 37 H 0.15 0.74 8.06 -52.49 -0.42 0.31 16 38 H 0.20 0.63 8.06 -52.48 -0.42 0.21 16 39 H 0.40 2.59 8.02 -40.82 -0.33 2.27 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.08 1.45 7.18 -51.93 -0.37 1.08 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.38 10.27 6.85 -40.82 -0.28 9.99 16 47 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 48 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 49 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 50 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 406.80 15.07 6.13 6.13 Total: -1.00 -33.88 406.80 -9.43 -43.30 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -8.82 Total: 7.91 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -2.00 Total: -11.79 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: 0.14 Total: -53.91 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.15 Total: -9.36 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.88 -9.43 -43.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672987359.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.153 kcal (2) G-P(sol) polarization free energy of solvation -33.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds