Wall clock time and date at job start Tue Mar 31 2020 18:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.47264 * 2 1 4 4 C 1.53002 * 109.46858 * 119.99729 * 2 1 3 5 5 C 1.50703 * 109.47423 * 294.99746 * 4 2 1 6 6 C 1.34514 * 125.78253 * 89.71289 * 5 4 2 7 7 C 1.41389 * 106.83294 * 179.89203 * 6 5 4 8 8 C 1.34505 * 106.84334 * 0.37805 * 7 6 5 9 9 O 1.34295 * 125.79083 * 270.03129 * 5 4 2 10 10 C 1.50701 * 109.47346 * 239.99630 * 2 1 3 11 11 O 1.21283 * 120.00052 * 240.00138 * 10 2 1 12 12 N 1.34770 * 119.99922 * 59.99959 * 10 2 1 13 13 C 1.46500 * 120.00256 * 180.02562 * 12 10 2 14 14 H 1.08998 * 109.46845 * 325.00694 * 13 12 10 15 15 C 1.53006 * 109.47249 * 84.99846 * 13 12 10 16 16 C 1.52997 * 109.47164 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.46978 * 299.99874 * 16 15 13 18 18 H 1.08992 * 109.47056 * 300.00064 * 17 16 15 19 19 C 1.52997 * 109.46978 * 180.02562 * 17 16 15 20 20 N 1.46507 * 109.47321 * 65.00089 * 19 17 16 21 21 C 1.36929 * 120.00158 * 179.97438 * 20 19 17 22 22 H 1.07995 * 120.00290 * 0.02562 * 21 20 19 23 23 C 1.38810 * 119.99945 * 180.02562 * 21 20 19 24 24 N 1.31626 * 119.99991 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00311 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47084 * 59.99742 * 25 23 21 27 27 H 1.48500 * 109.47270 * 180.02562 * 25 23 21 28 28 H 1.48505 * 109.46820 * 299.99776 * 25 23 21 29 29 C 1.52996 * 109.46891 * 60.00410 * 17 16 15 30 30 C 1.52997 * 109.47473 * 205.00145 * 13 12 10 31 31 H 1.09006 * 109.47048 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47261 * 299.99695 * 1 2 3 33 33 H 1.09000 * 109.46920 * 60.00565 * 1 2 3 34 34 H 1.09002 * 109.47267 * 55.00336 * 4 2 1 35 35 H 1.09001 * 109.47055 * 175.00005 * 4 2 1 36 36 H 1.07998 * 126.58470 * 0.03208 * 6 5 4 37 37 H 1.08002 * 126.57522 * 180.12193 * 7 6 5 38 38 H 1.08004 * 125.78832 * 179.79118 * 8 7 6 39 39 H 0.97005 * 120.00370 * 0.02562 * 12 10 2 40 40 H 1.09001 * 109.47002 * 60.00085 * 15 13 12 41 41 H 1.09000 * 109.47050 * 300.00351 * 15 13 12 42 42 H 1.09002 * 109.47045 * 180.02562 * 16 15 13 43 43 H 1.09001 * 109.47375 * 59.99966 * 16 15 13 44 44 H 1.08994 * 109.47445 * 185.00212 * 19 17 16 45 45 H 1.09000 * 109.47459 * 305.00519 * 19 17 16 46 46 H 0.97003 * 119.99307 * 0.02562 * 20 19 17 47 47 H 0.97003 * 119.99900 * 180.02562 * 24 23 21 48 48 H 1.09004 * 109.47368 * 179.97438 * 29 17 16 49 49 H 1.09001 * 109.47372 * 59.99964 * 29 17 16 50 50 H 1.09002 * 109.47153 * 59.99757 * 30 13 12 51 51 H 1.09001 * 109.46832 * 299.99948 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0571 2.4767 6 6 0.4984 -0.0971 3.1690 7 6 0.5391 0.8277 4.2378 8 6 1.7006 1.4973 4.1297 9 8 2.3641 1.0264 3.0611 10 6 2.0324 -0.7105 -1.2304 11 8 2.7297 -1.6966 -1.1191 12 7 1.7068 -0.2501 -2.4545 13 6 2.1947 -0.9411 -3.6506 14 1 3.1937 -1.3337 -3.4613 15 6 1.2502 -2.0947 -3.9942 16 6 1.7601 -2.8167 -5.2430 17 6 1.8121 -1.8340 -6.4146 18 1 0.8132 -1.4415 -6.6043 19 6 2.3214 -2.5562 -7.6636 20 7 1.3556 -3.5833 -8.0619 21 6 1.5990 -4.3626 -9.1611 22 1 2.5032 -4.2205 -9.7343 23 6 0.6836 -5.3354 -9.5387 24 7 -0.4186 -5.5083 -8.8404 25 14 1.0160 -6.3991 -11.0379 26 1 2.2796 -7.1534 -10.8393 27 1 -0.1062 -7.3532 -11.2266 28 1 1.1385 -5.5358 -12.2400 29 6 2.7567 -0.6805 -6.0711 30 6 2.2464 0.0418 -4.8220 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.6053 -1.7198 1.2952 35 1 3.1263 -0.7995 1.2057 36 1 -0.2967 -0.7949 2.9517 37 1 -0.2190 0.9718 4.9933 38 1 2.0420 2.2806 4.7903 39 1 1.1494 0.5388 -2.5436 40 1 0.2511 -1.7022 -4.1835 41 1 1.2133 -2.7950 -3.1597 42 1 1.0869 -3.6383 -5.4880 43 1 2.7591 -3.2092 -5.0534 44 1 2.4430 -1.8379 -8.4744 45 1 3.2812 -3.0249 -7.4464 46 1 0.5432 -3.7106 -7.5472 47 1 -1.0581 -6.1883 -9.1041 48 1 2.7942 0.0194 -6.9059 49 1 3.7557 -1.0731 -5.8814 50 1 2.9193 0.8637 -4.5773 51 1 1.2473 0.4343 -5.0113 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672987359.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:55 Heat of formation + Delta-G solvation = -64.270101 kcal Electronic energy + Delta-G solvation = -28336.269508 eV Core-core repulsion = 24428.287818 eV Total energy + Delta-G solvation = -3907.981689 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.48682 -41.25340 -39.57989 -36.79004 -36.11430 -35.13101 -33.77175 -33.08366 -31.71954 -31.18609 -30.13147 -27.54391 -26.86348 -25.00474 -24.11912 -23.46521 -22.60852 -21.93228 -21.42873 -21.05049 -20.50517 -19.15315 -18.48504 -17.84601 -17.34669 -16.85308 -16.67268 -16.42478 -16.00613 -15.58909 -15.44291 -15.28980 -15.09261 -14.90747 -14.64470 -14.56769 -13.83865 -13.76639 -13.68489 -13.54148 -13.43912 -13.37187 -13.16955 -13.07939 -12.86976 -12.81262 -12.73124 -12.27004 -12.20606 -12.08164 -12.03534 -12.01313 -11.89100 -11.46098 -11.24828 -11.14326 -10.89581 -10.79780 -10.69585 -10.01284 -9.33979 -8.97659 -7.94582 -5.22811 0.81536 1.46347 1.49832 1.55913 1.63062 1.72911 2.02806 2.31412 2.56453 3.38421 3.55831 3.72566 3.74448 3.77083 3.90260 3.96073 4.05316 4.11853 4.17820 4.18964 4.30424 4.35164 4.44725 4.48248 4.54985 4.58625 4.60859 4.63395 4.75744 4.84863 4.86591 4.95293 4.98897 5.03548 5.08000 5.08635 5.11574 5.14778 5.22501 5.24965 5.27585 5.28447 5.33007 5.46953 5.53252 5.56046 5.62935 5.65351 6.25512 6.27981 6.58529 7.28083 7.34018 8.11967 8.35151 9.28824 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.028529 B = 0.001742 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.222809 B =16071.479796 C =16571.748259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 H 0.117 0.883 4 C -0.019 4.019 5 C -0.022 4.022 6 C -0.212 4.212 7 C -0.226 4.226 8 C -0.045 4.045 9 O -0.195 6.195 10 C 0.516 3.484 11 O -0.583 6.583 12 N -0.710 5.710 13 C 0.151 3.849 14 H 0.067 0.933 15 C -0.116 4.116 16 C -0.101 4.101 17 C -0.083 4.083 18 H 0.067 0.933 19 C 0.153 3.847 20 N -0.744 5.744 21 C -0.248 4.248 22 H 0.074 0.926 23 C -0.077 4.077 24 N -0.970 5.970 25 Si 0.975 3.025 26 H -0.280 1.280 27 H -0.294 1.294 28 H -0.276 1.276 29 C -0.102 4.102 30 C -0.111 4.111 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.156 0.844 37 H 0.166 0.834 38 H 0.234 0.766 39 H 0.416 0.584 40 H 0.071 0.929 41 H 0.045 0.955 42 H 0.040 0.960 43 H 0.050 0.950 44 H 0.022 0.978 45 H 0.013 0.987 46 H 0.374 0.626 47 H 0.251 0.749 48 H 0.081 0.919 49 H 0.063 0.937 50 H 0.089 0.911 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.116 21.214 25.751 33.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 H 0.134 0.866 4 C -0.057 4.057 5 C -0.072 4.072 6 C -0.231 4.231 7 C -0.245 4.245 8 C -0.112 4.112 9 O -0.092 6.092 10 C 0.303 3.697 11 O -0.463 6.463 12 N -0.361 5.361 13 C 0.046 3.954 14 H 0.085 0.915 15 C -0.154 4.154 16 C -0.140 4.140 17 C -0.102 4.102 18 H 0.085 0.915 19 C 0.026 3.974 20 N -0.387 5.387 21 C -0.380 4.380 22 H 0.092 0.908 23 C -0.269 4.269 24 N -0.620 5.620 25 Si 0.803 3.197 26 H -0.206 1.206 27 H -0.221 1.221 28 H -0.202 1.202 29 C -0.140 4.140 30 C -0.149 4.149 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.113 0.887 35 H 0.094 0.906 36 H 0.174 0.826 37 H 0.183 0.817 38 H 0.250 0.750 39 H 0.253 0.747 40 H 0.090 0.910 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.068 0.932 44 H 0.040 0.960 45 H 0.031 0.969 46 H 0.206 0.794 47 H 0.060 0.940 48 H 0.100 0.900 49 H 0.082 0.918 50 H 0.108 0.892 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.995 20.573 25.567 32.953 hybrid contribution -0.666 -1.037 -0.612 1.376 sum 2.328 19.536 24.955 31.778 Atomic orbital electron populations 1.21871 0.91013 1.03057 1.04227 1.21229 0.99029 1.01077 0.90327 0.86555 1.19835 1.02336 0.96859 0.86686 1.22382 0.92643 0.93664 0.98478 1.21869 0.99290 1.04066 0.97921 1.22171 1.00348 0.99863 1.02134 1.24755 0.93436 1.02500 0.90529 1.84018 1.45214 1.43364 1.36563 1.20993 0.79116 0.83943 0.85602 1.90720 1.39915 1.28255 1.87397 1.45961 1.53405 1.32050 1.04692 1.20881 0.97246 0.92647 0.84621 0.91496 1.21791 0.99721 0.97364 0.96548 1.21369 1.00495 0.97713 0.94397 1.21237 0.99950 0.95648 0.93338 0.91452 1.20891 0.91856 0.89902 0.94715 1.42592 1.23449 1.40409 1.32240 1.19632 1.03483 1.11145 1.03740 0.90833 1.25578 0.97054 1.01608 1.02644 1.69817 1.11993 1.37370 1.42859 0.85197 0.76674 0.78338 0.79469 1.20578 1.22060 1.20225 1.21436 0.98356 0.96245 0.98007 1.21724 1.03427 0.97323 0.92452 0.92524 0.90308 0.90197 0.88677 0.90614 0.82609 0.81667 0.75010 0.74685 0.91002 0.93638 0.94115 0.93154 0.96011 0.96891 0.79379 0.94034 0.90040 0.91833 0.89215 0.89803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 8.79 71.98 0.63 -0.93 16 2 C -0.10 -1.35 2.71 -11.54 -0.03 -1.38 16 3 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 4 C -0.02 -0.33 4.57 29.85 0.14 -0.20 16 5 C -0.02 -0.36 6.06 24.83 0.15 -0.21 16 6 C -0.21 -3.11 9.38 22.19 0.21 -2.90 16 7 C -0.23 -2.77 10.91 22.19 0.24 -2.53 16 8 C -0.05 -0.53 12.09 66.97 0.81 0.28 16 9 O -0.19 -3.34 10.65 -2.43 -0.03 -3.37 16 10 C 0.52 10.62 7.12 87.66 0.62 11.24 16 11 O -0.58 -17.64 15.58 -3.04 -0.05 -17.69 16 12 N -0.71 -11.79 4.97 -442.53 -2.20 -13.99 16 13 C 0.15 3.24 2.45 44.99 0.11 3.35 16 14 H 0.07 1.77 7.58 -2.39 -0.02 1.75 16 15 C -0.12 -3.09 5.49 30.60 0.17 -2.93 16 16 C -0.10 -3.35 5.08 30.59 0.16 -3.20 16 17 C -0.08 -2.60 2.22 -10.80 -0.02 -2.62 16 18 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 19 C 0.15 6.23 5.65 86.38 0.49 6.72 16 20 N -0.74 -38.96 5.33 -343.46 -1.83 -40.79 16 21 C -0.25 -14.29 9.99 84.03 0.84 -13.46 16 22 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 23 C -0.08 -4.51 5.50 84.86 0.47 -4.05 16 24 N -0.97 -60.55 13.06 21.65 0.28 -60.27 16 25 Si 0.97 47.09 29.55 68.60 2.03 49.12 16 26 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 27 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 28 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 29 C -0.10 -2.30 5.21 30.61 0.16 -2.14 16 30 C -0.11 -1.89 5.39 30.61 0.17 -1.73 16 31 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.08 0.79 6.40 -2.39 -0.02 0.77 16 33 H 0.08 0.60 7.56 -2.39 -0.02 0.59 16 34 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.08 1.50 7.95 -2.39 -0.02 1.48 16 36 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 37 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 38 H 0.23 0.80 8.06 -2.91 -0.02 0.78 16 39 H 0.42 4.04 8.02 -92.70 -0.74 3.30 16 40 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.04 1.62 7.18 -2.39 -0.02 1.61 16 43 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 46 H 0.37 20.73 6.85 -92.71 -0.64 20.10 16 47 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 48 H 0.08 1.65 8.14 -2.39 -0.02 1.64 16 49 H 0.06 1.46 8.14 -2.39 -0.02 1.45 16 50 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 51 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -75.28 406.80 3.05 -72.24 By element: Atomic # 1 Polarization: 31.88 SS G_CDS: -0.46 Total: 31.42 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: 5.30 Total: -16.67 kcal Atomic # 7 Polarization: -111.30 SS G_CDS: -3.75 Total: -115.05 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.07 Total: -21.05 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -75.28 3.05 -72.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672987359.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.968 kcal (2) G-P(sol) polarization free energy of solvation -75.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds