Wall clock time and date at job start Tue Mar 31 2020 17:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.42900 * 109.46514 * 195.38686 * 3 2 1 5 5 C 1.42906 * 113.99776 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.47197 * 329.99673 * 5 4 3 7 7 C 1.52996 * 109.47387 * 90.00218 * 5 4 3 8 8 C 1.50706 * 109.46993 * 210.00094 * 5 4 3 9 9 O 1.21287 * 119.99643 * 352.21195 * 8 5 4 10 10 N 1.34777 * 120.00198 * 172.21684 * 8 5 4 11 11 C 1.46926 * 120.64189 * 174.27711 * 10 8 5 12 12 C 1.53190 * 108.77232 * 126.62372 * 11 10 8 13 13 C 1.53037 * 109.33249 * 54.63893 * 12 11 10 14 14 C 1.53035 * 109.44223 * 58.70145 * 13 12 11 15 15 C 1.53188 * 109.33728 * 181.22929 * 14 13 12 16 16 N 1.46932 * 108.78198 * 305.37354 * 15 14 13 17 17 C 1.36936 * 120.63964 * 233.61576 * 16 15 14 18 18 H 1.08006 * 119.99964 * 28.76255 * 17 16 15 19 19 C 1.38811 * 119.99982 * 208.75252 * 17 16 15 20 20 N 1.31622 * 119.99761 * 15.77565 * 19 17 16 21 21 Si 1.86791 * 120.00237 * 195.77378 * 19 17 16 22 22 H 1.48493 * 109.47243 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47150 * 120.00265 * 21 19 17 24 24 H 1.48496 * 109.47390 * 240.00162 * 21 19 17 25 25 C 1.46920 * 118.71274 * 53.63440 * 16 15 14 26 26 C 1.53052 * 109.39322 * 178.72593 * 13 12 11 27 27 C 1.53026 * 109.55267 * 298.68609 * 13 12 11 28 28 C 1.46930 * 120.63950 * 354.54856 * 10 8 5 29 29 H 4.38444 * 5.44490 * 180.02562 * 4 1 2 30 30 H 1.08993 * 109.47466 * 75.39147 * 3 2 1 31 31 H 1.08996 * 109.47750 * 315.38496 * 3 2 1 32 32 H 1.08996 * 109.47454 * 65.21319 * 7 5 4 33 33 H 1.08998 * 109.46960 * 185.21614 * 7 5 4 34 34 H 1.09004 * 109.46629 * 305.21703 * 7 5 4 35 35 H 1.09004 * 109.58478 * 246.40635 * 11 10 8 36 36 H 1.08993 * 109.58887 * 6.83229 * 11 10 8 37 37 H 1.09002 * 109.49089 * 294.67737 * 12 11 10 38 38 H 1.08998 * 109.48940 * 174.59919 * 12 11 10 39 39 H 1.09003 * 109.48991 * 301.18615 * 14 13 12 40 40 H 1.09003 * 109.49425 * 61.26802 * 14 13 12 41 41 H 1.09002 * 109.58216 * 185.58214 * 15 14 13 42 42 H 1.08999 * 109.70019 * 65.23207 * 15 14 13 43 43 H 0.96999 * 119.99976 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.58424 * 186.57259 * 25 16 15 45 45 H 1.09004 * 109.70150 * 66.21892 * 25 16 15 46 46 H 1.09004 * 109.48966 * 298.69409 * 26 13 12 47 47 H 1.08996 * 109.48954 * 58.77209 * 26 13 12 48 48 H 1.09003 * 109.49528 * 301.34829 * 27 13 12 49 49 H 1.08994 * 109.50104 * 181.25817 * 27 13 12 50 50 H 1.08994 * 109.58731 * 353.15961 * 28 10 8 51 51 H 1.09007 * 109.58188 * 113.43911 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1216 1.2999 0.3575 5 6 4.5461 1.4096 0.3869 6 1 4.9793 0.4458 0.6543 7 6 5.0538 1.8317 -0.9933 8 6 4.9495 2.4421 1.4079 9 8 4.1042 3.1260 1.9452 10 7 6.2495 2.6056 1.7238 11 6 6.6714 3.6894 2.6216 12 6 7.5022 3.0905 3.7609 13 6 8.6570 2.2769 3.1723 14 6 9.5221 3.1827 2.2931 15 6 10.6594 2.3590 1.6808 16 7 11.3936 1.6887 2.7627 17 6 12.7510 1.8296 2.8766 18 1 13.2319 2.7300 2.5237 19 6 13.5087 0.8154 3.4458 20 7 12.9949 -0.3877 3.5908 21 14 15.2573 1.1579 4.0061 22 1 15.5948 2.5783 3.7347 23 1 15.3715 0.8921 5.4627 24 1 16.1958 0.2758 3.2670 25 6 10.6434 0.8640 3.7195 26 6 9.5064 1.7041 4.3094 27 6 8.0972 1.1303 2.3275 28 6 7.2728 1.7070 1.1722 29 1 -1.0503 -0.0005 0.0001 30 1 3.0095 -0.2583 -0.9944 31 1 3.0097 -0.7307 0.7217 32 1 4.6953 2.8355 -1.2209 33 1 6.1438 1.8256 -0.9970 34 1 4.6839 1.1346 -1.7452 35 1 7.2753 4.4083 2.0678 36 1 5.7927 4.1866 3.0323 37 1 6.8718 2.4409 4.3681 38 1 7.9015 3.8933 4.3806 39 1 8.9112 3.6076 1.4967 40 1 9.9404 3.9862 2.8994 41 1 11.3345 3.0178 1.1345 42 1 10.2480 1.6127 1.0013 43 1 13.5245 -1.0966 3.9882 44 1 11.3079 0.5359 4.5188 45 1 10.2285 -0.0053 3.2092 46 1 9.9249 2.5208 4.8976 47 1 8.8842 1.0771 4.9479 48 1 7.4616 0.4981 2.9477 49 1 8.9200 0.5381 1.9270 50 1 6.7910 0.8958 0.6265 51 1 7.9238 2.2644 0.4987 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674294515.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:32 Heat of formation + Delta-G solvation = 0.376524 kcal Electronic energy + Delta-G solvation = -30229.133847 eV Core-core repulsion = 26323.955446 eV Total energy + Delta-G solvation = -3905.178401 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.77708 -39.21573 -37.87735 -35.90697 -33.97609 -33.53347 -32.10398 -31.05607 -30.62945 -29.98898 -27.99340 -27.43942 -25.48534 -24.19477 -23.41427 -22.92199 -21.90903 -20.64957 -19.52330 -18.95026 -17.79683 -17.44571 -16.97257 -16.39497 -16.13354 -15.72093 -15.16800 -14.87444 -14.81321 -14.28836 -14.14415 -14.03795 -13.90360 -13.59673 -13.32895 -13.15894 -12.95472 -12.85509 -12.56199 -12.48240 -12.13597 -11.78359 -11.63548 -11.42692 -11.35755 -11.21531 -11.05952 -10.97027 -10.86149 -10.78071 -10.56772 -10.41093 -10.13602 -10.11468 -10.00265 -9.76205 -9.52718 -9.51186 -9.39909 -8.54280 -8.47225 -6.65296 -5.80882 -3.23886 2.06595 2.49144 2.52350 2.85148 3.34679 3.43129 3.44836 3.65384 4.14774 4.34323 4.47484 4.52345 4.68589 4.82214 4.84195 5.01908 5.02756 5.04911 5.18203 5.27588 5.30874 5.36558 5.39050 5.41294 5.43948 5.57710 5.63634 5.75227 5.80536 5.83922 5.93224 5.98813 6.08333 6.10788 6.21728 6.28634 6.38076 6.50036 6.53177 6.62995 6.69289 6.72161 6.81551 6.88373 6.97684 7.25137 7.34113 7.37511 7.66485 7.78191 8.11533 8.44196 9.20298 9.83598 10.40319 11.27192 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.024346 B = 0.002478 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.792139 B =11298.410702 C =11650.662398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.191 4.191 3 C 0.169 3.831 4 O -0.352 6.352 5 C 0.071 3.929 6 H 0.090 0.910 7 C -0.174 4.174 8 C 0.517 3.483 9 O -0.527 6.527 10 N -0.603 5.603 11 C 0.113 3.887 12 C -0.124 4.124 13 C -0.045 4.045 14 C -0.126 4.126 15 C 0.146 3.854 16 N -0.591 5.591 17 C -0.249 4.249 18 H 0.064 0.936 19 C 0.002 3.998 20 N -0.903 5.903 21 Si 0.901 3.099 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.291 1.291 25 C 0.171 3.829 26 C -0.130 4.130 27 C -0.126 4.126 28 C 0.102 3.898 29 H 0.222 0.778 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.051 0.949 40 H 0.058 0.942 41 H 0.049 0.951 42 H 0.018 0.982 43 H 0.252 0.748 44 H 0.084 0.916 45 H 0.019 0.981 46 H 0.054 0.946 47 H 0.046 0.954 48 H 0.060 0.940 49 H 0.092 0.908 50 H 0.078 0.922 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.559 1.234 -7.398 19.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.191 4.191 3 C 0.093 3.907 4 O -0.271 6.271 5 C 0.010 3.990 6 H 0.107 0.893 7 C -0.231 4.231 8 C 0.303 3.697 9 O -0.402 6.402 10 N -0.338 5.338 11 C -0.008 4.008 12 C -0.162 4.162 13 C -0.046 4.046 14 C -0.165 4.165 15 C 0.019 3.981 16 N -0.314 5.314 17 C -0.379 4.379 18 H 0.082 0.918 19 C -0.197 4.197 20 N -0.548 5.548 21 Si 0.731 3.269 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.218 1.218 25 C 0.046 3.954 26 C -0.170 4.170 27 C -0.164 4.164 28 C -0.020 4.020 29 H 0.239 0.761 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.036 0.964 43 H 0.063 0.937 44 H 0.102 0.898 45 H 0.037 0.963 46 H 0.073 0.927 47 H 0.065 0.935 48 H 0.078 0.922 49 H 0.111 0.889 50 H 0.096 0.904 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.035 1.618 -7.008 19.417 hybrid contribution 0.978 -0.224 0.308 1.050 sum -17.057 1.395 -6.700 18.379 Atomic orbital electron populations 1.24974 0.95884 0.97623 1.00553 1.22432 0.93793 1.02111 1.00785 1.19191 0.85069 0.85869 1.00545 1.88111 1.19121 1.29621 1.90213 1.21938 0.82599 0.98941 0.95508 0.89255 1.22309 1.02355 1.03512 0.94967 1.20228 0.82286 0.84502 0.82645 1.90704 1.49723 1.47008 1.52785 1.48056 1.05775 1.32138 1.47852 1.21661 0.99232 0.88735 0.91197 1.22022 0.96962 1.00140 0.97060 1.20367 0.93672 0.94554 0.95973 1.22159 0.97548 0.98330 0.98483 1.20917 0.92374 0.94143 0.90650 1.44017 1.03324 1.56574 1.27440 1.19213 0.82458 0.99031 1.37218 0.91820 1.25048 0.97725 0.94655 1.02252 1.70020 1.36788 1.00407 1.47583 0.86249 0.84747 0.77675 0.78254 1.20306 1.21625 1.21772 1.20774 0.90786 0.90382 0.93491 1.22236 0.98173 1.00253 0.96297 1.22056 0.99554 0.98278 0.96540 1.22011 0.90206 0.92947 0.96871 0.76106 0.90512 0.90539 0.91061 0.90147 0.91023 0.91101 0.89515 0.91995 0.90935 0.93041 0.92326 0.93205 0.96436 0.93749 0.89750 0.96258 0.92672 0.93530 0.92159 0.88929 0.90357 0.90438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 19.25 29.55 0.57 -0.97 16 2 C -0.19 -2.01 13.73 -37.12 -0.51 -2.52 16 3 C 0.17 1.55 6.22 34.37 0.21 1.77 16 4 O -0.35 -4.42 9.49 -55.02 -0.52 -4.94 16 5 C 0.07 0.75 2.29 -27.88 -0.06 0.68 16 6 H 0.09 0.73 6.67 -51.93 -0.35 0.38 16 7 C -0.17 -1.43 9.21 37.16 0.34 -1.09 16 8 C 0.52 7.09 7.05 -10.98 -0.08 7.02 16 9 O -0.53 -9.41 15.94 -14.24 -0.23 -9.64 16 10 N -0.60 -7.40 2.97 -172.76 -0.51 -7.91 16 11 C 0.11 1.43 5.97 -3.71 -0.02 1.40 16 12 C -0.12 -1.62 4.90 -26.61 -0.13 -1.75 16 13 C -0.05 -0.67 0.51 -154.43 -0.08 -0.75 16 14 C -0.13 -1.95 4.15 -26.62 -0.11 -2.06 16 15 C 0.15 2.76 6.04 -3.71 -0.02 2.74 16 16 N -0.59 -13.82 2.99 -172.33 -0.52 -14.34 16 17 C -0.25 -6.59 9.58 -15.06 -0.14 -6.73 16 18 H 0.06 1.67 7.88 -52.48 -0.41 1.26 16 19 C 0.00 0.04 4.94 -17.43 -0.09 -0.04 16 20 N -0.90 -25.37 11.17 55.49 0.62 -24.75 16 21 Si 0.90 21.25 29.58 -169.99 -5.03 16.22 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 C 0.17 3.80 4.82 -3.72 -0.02 3.79 16 26 C -0.13 -2.31 4.90 -26.61 -0.13 -2.44 16 27 C -0.13 -1.70 4.14 -26.62 -0.11 -1.81 16 28 C 0.10 1.11 4.61 -3.71 -0.02 1.09 16 29 H 0.22 1.09 7.80 -54.08 -0.42 0.67 16 30 H 0.08 0.51 7.78 -51.93 -0.40 0.10 16 31 H 0.08 0.58 8.08 -51.93 -0.42 0.16 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.57 6.16 -51.93 -0.32 0.25 16 34 H 0.07 0.46 7.78 -51.93 -0.40 0.06 16 35 H 0.07 0.83 6.67 -51.93 -0.35 0.49 16 36 H 0.09 1.18 7.00 -51.93 -0.36 0.81 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.05 0.68 4.99 -51.93 -0.26 0.42 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.05 0.96 7.93 -51.93 -0.41 0.54 16 42 H 0.02 0.33 6.74 -51.93 -0.35 -0.02 16 43 H 0.25 6.88 8.31 -40.82 -0.34 6.55 16 44 H 0.08 2.17 6.07 -51.93 -0.32 1.86 16 45 H 0.02 0.45 6.67 -51.93 -0.35 0.10 16 46 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 47 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 49 H 0.09 1.44 4.99 -51.93 -0.26 1.18 16 50 H 0.08 0.67 5.02 -51.93 -0.26 0.41 16 51 H 0.08 0.82 6.74 -51.93 -0.35 0.47 16 LS Contribution 386.06 15.07 5.82 5.82 Total: -1.00 -32.67 386.06 -8.85 -41.52 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -8.09 Total: -0.30 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -0.40 Total: -1.67 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: -0.41 Total: -47.01 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.75 Total: -14.58 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.67 -8.85 -41.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674294515.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.896 kcal (2) G-P(sol) polarization free energy of solvation -32.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds