Wall clock time and date at job start Tue Mar 31 2020 17:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.42900 * 109.46514 * 195.38686 * 3 2 1 5 5 C 1.42906 * 113.99776 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.47197 * 329.99673 * 5 4 3 7 7 C 1.52996 * 109.47387 * 90.00218 * 5 4 3 8 8 C 1.50706 * 109.46993 * 210.00094 * 5 4 3 9 9 O 1.21287 * 119.99643 * 352.21195 * 8 5 4 10 10 N 1.34777 * 120.00198 * 172.21684 * 8 5 4 11 11 C 1.46926 * 120.64189 * 174.27711 * 10 8 5 12 12 C 1.53190 * 108.77232 * 126.62372 * 11 10 8 13 13 C 1.53037 * 109.33249 * 54.63893 * 12 11 10 14 14 C 1.53035 * 109.44223 * 58.70145 * 13 12 11 15 15 C 1.53188 * 109.33728 * 181.22929 * 14 13 12 16 16 N 1.46932 * 108.78198 * 305.37354 * 15 14 13 17 17 C 1.36936 * 120.63964 * 233.61576 * 16 15 14 18 18 H 1.08006 * 119.99964 * 28.76255 * 17 16 15 19 19 C 1.38811 * 119.99982 * 208.75252 * 17 16 15 20 20 N 1.31622 * 119.99761 * 15.77565 * 19 17 16 21 21 Si 1.86791 * 120.00237 * 195.77378 * 19 17 16 22 22 H 1.48493 * 109.47243 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47150 * 120.00265 * 21 19 17 24 24 H 1.48496 * 109.47390 * 240.00162 * 21 19 17 25 25 C 1.46920 * 118.71274 * 53.63440 * 16 15 14 26 26 C 1.53052 * 109.39322 * 178.72593 * 13 12 11 27 27 C 1.53026 * 109.55267 * 298.68609 * 13 12 11 28 28 C 1.46930 * 120.63950 * 354.54856 * 10 8 5 29 29 H 4.38444 * 5.44490 * 180.02562 * 4 1 2 30 30 H 1.08993 * 109.47466 * 75.39147 * 3 2 1 31 31 H 1.08996 * 109.47750 * 315.38496 * 3 2 1 32 32 H 1.08996 * 109.47454 * 65.21319 * 7 5 4 33 33 H 1.08998 * 109.46960 * 185.21614 * 7 5 4 34 34 H 1.09004 * 109.46629 * 305.21703 * 7 5 4 35 35 H 1.09004 * 109.58478 * 246.40635 * 11 10 8 36 36 H 1.08993 * 109.58887 * 6.83229 * 11 10 8 37 37 H 1.09002 * 109.49089 * 294.67737 * 12 11 10 38 38 H 1.08998 * 109.48940 * 174.59919 * 12 11 10 39 39 H 1.09003 * 109.48991 * 301.18615 * 14 13 12 40 40 H 1.09003 * 109.49425 * 61.26802 * 14 13 12 41 41 H 1.09002 * 109.58216 * 185.58214 * 15 14 13 42 42 H 1.08999 * 109.70019 * 65.23207 * 15 14 13 43 43 H 0.96999 * 119.99976 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.58424 * 186.57259 * 25 16 15 45 45 H 1.09004 * 109.70150 * 66.21892 * 25 16 15 46 46 H 1.09004 * 109.48966 * 298.69409 * 26 13 12 47 47 H 1.08996 * 109.48954 * 58.77209 * 26 13 12 48 48 H 1.09003 * 109.49528 * 301.34829 * 27 13 12 49 49 H 1.08994 * 109.50104 * 181.25817 * 27 13 12 50 50 H 1.08994 * 109.58731 * 353.15961 * 28 10 8 51 51 H 1.09007 * 109.58188 * 113.43911 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1216 1.2999 0.3575 5 6 4.5461 1.4096 0.3869 6 1 4.9793 0.4458 0.6543 7 6 5.0538 1.8317 -0.9933 8 6 4.9495 2.4421 1.4079 9 8 4.1042 3.1260 1.9452 10 7 6.2495 2.6056 1.7238 11 6 6.6714 3.6894 2.6216 12 6 7.5022 3.0905 3.7609 13 6 8.6570 2.2769 3.1723 14 6 9.5221 3.1827 2.2931 15 6 10.6594 2.3590 1.6808 16 7 11.3936 1.6887 2.7627 17 6 12.7510 1.8296 2.8766 18 1 13.2319 2.7300 2.5237 19 6 13.5087 0.8154 3.4458 20 7 12.9949 -0.3877 3.5908 21 14 15.2573 1.1579 4.0061 22 1 15.5948 2.5783 3.7347 23 1 15.3715 0.8921 5.4627 24 1 16.1958 0.2758 3.2670 25 6 10.6434 0.8640 3.7195 26 6 9.5064 1.7041 4.3094 27 6 8.0972 1.1303 2.3275 28 6 7.2728 1.7070 1.1722 29 1 -1.0503 -0.0005 0.0001 30 1 3.0095 -0.2583 -0.9944 31 1 3.0097 -0.7307 0.7217 32 1 4.6953 2.8355 -1.2209 33 1 6.1438 1.8256 -0.9970 34 1 4.6839 1.1346 -1.7452 35 1 7.2753 4.4083 2.0678 36 1 5.7927 4.1866 3.0323 37 1 6.8718 2.4409 4.3681 38 1 7.9015 3.8933 4.3806 39 1 8.9112 3.6076 1.4967 40 1 9.9404 3.9862 2.8994 41 1 11.3345 3.0178 1.1345 42 1 10.2480 1.6127 1.0013 43 1 13.5245 -1.0966 3.9882 44 1 11.3079 0.5359 4.5188 45 1 10.2285 -0.0053 3.2092 46 1 9.9249 2.5208 4.8976 47 1 8.8842 1.0771 4.9479 48 1 7.4616 0.4981 2.9477 49 1 8.9200 0.5381 1.9270 50 1 6.7910 0.8958 0.6265 51 1 7.9238 2.2644 0.4987 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674294515.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:31 Heat of formation + Delta-G solvation = -18.221198 kcal Electronic energy + Delta-G solvation = -30229.940305 eV Core-core repulsion = 26323.955446 eV Total energy + Delta-G solvation = -3905.984859 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.84033 -40.33691 -38.82795 -37.31388 -35.24434 -34.43898 -33.33703 -32.46463 -31.65849 -31.42939 -29.41649 -28.09339 -26.89320 -25.48496 -24.45916 -24.16448 -23.37850 -21.98209 -20.64816 -19.72622 -19.17115 -18.45077 -18.09984 -17.63441 -17.02141 -16.84545 -16.51895 -16.06448 -15.81246 -15.65272 -15.44900 -15.21401 -15.09035 -14.88589 -14.59174 -14.41348 -14.20736 -13.91946 -13.50736 -13.24910 -13.15046 -13.08221 -13.00057 -12.86643 -12.76489 -12.57569 -12.41222 -12.21610 -12.09998 -12.05072 -11.73595 -11.71581 -11.60447 -11.56150 -11.14779 -11.04460 -10.88024 -10.80390 -10.46132 -10.43663 -9.60614 -8.56327 -7.82817 -5.27430 1.33068 1.45663 1.48827 1.52284 1.57826 1.81210 1.96718 2.53314 2.95755 3.31262 3.36983 3.63373 3.73430 3.79915 3.83790 3.88569 3.93727 4.01886 4.16109 4.25474 4.26893 4.37868 4.45506 4.47560 4.60756 4.62074 4.69859 4.73301 4.78537 4.81460 4.82480 4.87113 4.89595 5.00909 5.05233 5.09504 5.11850 5.20200 5.23119 5.33600 5.41058 5.45171 5.52271 5.60698 5.63969 5.72530 5.89126 5.99051 6.38346 6.45098 6.59099 7.11434 7.21281 7.94762 8.44592 9.22263 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.024346 B = 0.002478 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.792139 B =11298.410702 C =11650.662398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.238 4.238 3 C 0.163 3.837 4 O -0.386 6.386 5 C 0.072 3.928 6 H 0.117 0.883 7 C -0.169 4.169 8 C 0.512 3.488 9 O -0.577 6.577 10 N -0.598 5.598 11 C 0.115 3.885 12 C -0.113 4.113 13 C -0.041 4.041 14 C -0.113 4.113 15 C 0.142 3.858 16 N -0.608 5.608 17 C -0.255 4.255 18 H 0.062 0.938 19 C -0.051 4.051 20 N -0.932 5.932 21 Si 0.959 3.041 22 H -0.269 1.269 23 H -0.294 1.294 24 H -0.293 1.293 25 C 0.181 3.819 26 C -0.120 4.120 27 C -0.122 4.122 28 C 0.105 3.895 29 H 0.253 0.747 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.054 0.946 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.048 0.952 41 H 0.045 0.955 42 H 0.029 0.971 43 H 0.248 0.752 44 H 0.042 0.958 45 H 0.008 0.992 46 H 0.043 0.957 47 H 0.057 0.943 48 H 0.061 0.939 49 H 0.073 0.927 50 H 0.108 0.892 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.579 1.518 -8.903 20.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.238 4.238 3 C 0.088 3.912 4 O -0.305 6.305 5 C 0.011 3.989 6 H 0.135 0.865 7 C -0.226 4.226 8 C 0.300 3.700 9 O -0.456 6.456 10 N -0.332 5.332 11 C -0.007 4.007 12 C -0.151 4.151 13 C -0.041 4.041 14 C -0.152 4.152 15 C 0.017 3.983 16 N -0.332 5.332 17 C -0.386 4.386 18 H 0.080 0.920 19 C -0.246 4.246 20 N -0.579 5.579 21 Si 0.789 3.211 22 H -0.193 1.193 23 H -0.221 1.221 24 H -0.220 1.220 25 C 0.055 3.945 26 C -0.159 4.159 27 C -0.160 4.160 28 C -0.016 4.016 29 H 0.269 0.731 30 H 0.121 0.879 31 H 0.107 0.893 32 H 0.074 0.926 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.047 0.953 43 H 0.057 0.943 44 H 0.061 0.939 45 H 0.025 0.975 46 H 0.062 0.938 47 H 0.075 0.925 48 H 0.080 0.920 49 H 0.092 0.908 50 H 0.127 0.873 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -19.048 1.914 -8.537 20.961 hybrid contribution 1.247 -0.315 0.775 1.502 sum -17.801 1.600 -7.762 19.485 Atomic orbital electron populations 1.25877 0.96917 0.96121 0.99316 1.23140 0.95060 1.03535 1.02103 1.19459 0.84633 0.84812 1.02308 1.88063 1.20210 1.31586 1.90654 1.22070 0.82229 0.99004 0.95586 0.86535 1.22311 1.03180 1.03137 0.93978 1.20905 0.82002 0.84489 0.82601 1.90679 1.51050 1.49099 1.54769 1.48101 1.05796 1.31917 1.47354 1.21625 0.98788 0.89083 0.91222 1.21893 0.96065 0.99922 0.97263 1.20301 0.93655 0.95133 0.94994 1.22014 0.96594 0.97442 0.99110 1.21089 0.93023 0.94321 0.89872 1.44257 1.02883 1.56949 1.29118 1.19494 0.84090 0.98672 1.36306 0.92017 1.25715 1.01104 0.94646 1.03155 1.70157 1.37872 1.01043 1.48814 0.85320 0.80842 0.77740 0.77241 1.19316 1.22077 1.22004 1.20536 0.91049 0.90795 0.92102 1.22059 0.97174 0.99338 0.97299 1.21957 0.99253 0.97527 0.97250 1.22110 0.89896 0.93733 0.95888 0.73126 0.87949 0.89259 0.92645 0.88629 0.88888 0.89715 0.90591 0.92406 0.90407 0.89928 0.93297 0.93654 0.95344 0.94321 0.93929 0.97451 0.93795 0.92477 0.91999 0.90827 0.87349 0.89227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 19.25 74.32 1.43 -1.26 16 2 C -0.24 -4.74 13.73 31.12 0.43 -4.32 16 3 C 0.16 2.70 6.22 70.18 0.44 3.13 16 4 O -0.39 -9.12 9.49 -130.06 -1.23 -10.36 16 5 C 0.07 1.32 2.29 29.85 0.07 1.39 16 6 H 0.12 1.46 6.67 -2.39 -0.02 1.44 16 7 C -0.17 -2.23 9.21 71.98 0.66 -1.57 16 8 C 0.51 13.14 7.05 87.66 0.62 13.75 16 9 O -0.58 -20.42 15.94 15.87 0.25 -20.17 16 10 N -0.60 -13.10 2.97 -818.88 -2.43 -15.53 16 11 C 0.11 2.63 5.97 86.36 0.52 3.14 16 12 C -0.11 -2.74 4.90 30.67 0.15 -2.59 16 13 C -0.04 -1.12 0.51 -52.13 -0.03 -1.15 16 14 C -0.11 -3.23 4.15 30.67 0.13 -3.10 16 15 C 0.14 5.19 6.04 86.36 0.52 5.71 16 16 N -0.61 -28.58 2.99 -699.12 -2.09 -30.67 16 17 C -0.25 -13.58 9.58 84.03 0.81 -12.77 16 18 H 0.06 3.24 7.88 -2.91 -0.02 3.22 16 19 C -0.05 -2.78 4.94 84.86 0.42 -2.36 16 20 N -0.93 -53.74 11.17 21.65 0.24 -53.50 16 21 Si 0.96 44.32 29.58 68.60 2.03 46.34 16 22 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 23 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 24 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 25 C 0.18 8.18 4.82 86.36 0.42 8.59 16 26 C -0.12 -4.20 4.90 30.67 0.15 -4.05 16 27 C -0.12 -3.00 4.14 30.67 0.13 -2.87 16 28 C 0.11 1.91 4.61 86.36 0.40 2.31 16 29 H 0.25 1.90 7.80 -4.40 -0.03 1.86 16 30 H 0.10 1.08 7.78 -2.39 -0.02 1.06 16 31 H 0.09 1.17 8.08 -2.39 -0.02 1.15 16 32 H 0.05 0.92 8.14 -2.39 -0.02 0.91 16 33 H 0.10 0.95 6.16 -2.39 -0.01 0.94 16 34 H 0.09 0.85 7.78 -2.39 -0.02 0.83 16 35 H 0.08 1.72 6.67 -2.38 -0.02 1.71 16 36 H 0.08 1.97 7.00 -2.39 -0.02 1.95 16 37 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.08 1.88 4.99 -2.39 -0.01 1.87 16 40 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.04 1.68 7.93 -2.39 -0.02 1.66 16 42 H 0.03 1.00 6.74 -2.39 -0.02 0.98 16 43 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 44 H 0.04 2.27 6.07 -2.39 -0.01 2.26 16 45 H 0.01 0.35 6.67 -2.38 -0.02 0.34 16 46 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 47 H 0.06 1.86 8.14 -2.39 -0.02 1.85 16 48 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 49 H 0.07 2.15 4.99 -2.39 -0.01 2.14 16 50 H 0.11 1.37 5.02 -2.39 -0.01 1.36 16 51 H 0.09 1.49 6.74 -2.38 -0.02 1.47 16 Total: -1.00 -73.75 386.06 4.93 -68.82 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 0.92 Total: 13.07 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: 7.25 Total: 2.00 kcal Atomic # 7 Polarization: -95.42 SS G_CDS: -4.28 Total: -99.71 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -0.98 Total: -30.53 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -73.75 4.93 -68.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674294515.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.600 kcal (2) G-P(sol) polarization free energy of solvation -73.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds