Wall clock time and date at job start Tue Mar 31 2020 17:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 O 1.42899 * 109.47522 * 326.14859 * 3 2 1 5 5 C 1.42897 * 114.00310 * 179.97438 * 4 3 2 6 6 H 1.09006 * 109.47070 * 29.99643 * 5 4 3 7 7 C 1.52998 * 109.47014 * 269.99441 * 5 4 3 8 8 C 1.50701 * 109.47392 * 149.99536 * 5 4 3 9 9 O 1.21288 * 119.99791 * 4.99760 * 8 5 4 10 10 N 1.34771 * 120.00195 * 185.00187 * 8 5 4 11 11 C 1.46928 * 120.64586 * 179.97438 * 10 8 5 12 12 C 1.53186 * 108.89141 * 233.59700 * 11 10 8 13 13 C 1.53074 * 109.32377 * 305.57545 * 12 11 10 14 14 C 1.53054 * 109.38573 * 181.10585 * 13 12 11 15 15 C 1.53177 * 109.32858 * 181.14415 * 14 13 12 16 16 N 1.46931 * 108.77427 * 305.35558 * 15 14 13 17 17 C 1.36943 * 120.64113 * 233.62283 * 16 15 14 18 18 H 1.08001 * 119.99722 * 27.68255 * 17 16 15 19 19 C 1.38810 * 120.00192 * 207.68500 * 17 16 15 20 20 N 1.31627 * 119.99639 * 17.36811 * 19 17 16 21 21 Si 1.86792 * 120.00091 * 197.36653 * 19 17 16 22 22 H 1.48499 * 109.47326 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47015 * 120.00142 * 21 19 17 24 24 H 1.48497 * 109.47186 * 239.99971 * 21 19 17 25 25 C 1.46922 * 118.71933 * 53.64155 * 16 15 14 26 26 C 1.53023 * 109.33598 * 301.06287 * 13 12 11 27 27 C 1.53034 * 109.66880 * 61.08653 * 13 12 11 28 28 C 1.46931 * 120.64341 * 0.02562 * 10 8 5 29 29 H 4.38449 * 5.44536 * 179.97438 * 4 1 2 30 30 H 1.08990 * 109.47301 * 206.14079 * 3 2 1 31 31 H 1.09010 * 109.46957 * 86.14277 * 3 2 1 32 32 H 1.08999 * 109.46813 * 60.00089 * 7 5 4 33 33 H 1.08996 * 109.47235 * 179.97438 * 7 5 4 34 34 H 1.08997 * 109.47150 * 300.00194 * 7 5 4 35 35 H 1.08997 * 109.58495 * 353.45786 * 11 10 8 36 36 H 1.09001 * 109.58844 * 113.73891 * 11 10 8 37 37 H 1.08995 * 109.49369 * 65.39948 * 12 11 10 38 38 H 1.09006 * 109.48913 * 185.47509 * 12 11 10 39 39 H 1.09001 * 109.49655 * 301.10502 * 14 13 12 40 40 H 1.09003 * 109.48846 * 61.18872 * 14 13 12 41 41 H 1.09001 * 109.58503 * 185.56723 * 15 14 13 42 42 H 1.09000 * 109.70702 * 65.21690 * 15 14 13 43 43 H 0.96997 * 119.99779 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.58476 * 186.58599 * 25 16 15 45 45 H 1.08997 * 109.69864 * 66.23388 * 25 16 15 46 46 H 1.09010 * 109.49255 * 298.81025 * 26 13 12 47 47 H 1.09001 * 109.49162 * 58.88454 * 26 13 12 48 48 H 1.09000 * 109.49024 * 178.81538 * 27 13 12 49 49 H 1.08999 * 109.49166 * 58.73447 * 27 13 12 50 50 H 1.09006 * 109.58640 * 246.12452 * 28 10 8 51 51 H 1.08992 * 109.58868 * 6.40220 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1229 -1.1180 0.7505 5 6 4.5474 -1.2114 0.8128 6 1 4.9797 -0.2120 0.7609 7 6 5.0556 -2.0485 -0.3627 8 6 4.9517 -1.8669 2.1082 9 8 4.1036 -2.3011 2.8586 10 7 6.2557 -1.9705 2.4327 11 6 6.6657 -2.6064 3.6922 12 6 7.5772 -1.6440 4.4600 13 6 8.7400 -1.2204 3.5591 14 6 9.6667 -0.2804 4.3339 15 6 10.8142 0.1652 3.4223 16 7 11.4800 -1.0281 2.8824 17 6 12.8329 -1.1929 3.0157 18 1 13.3526 -0.7407 3.8474 19 6 13.5363 -1.9411 2.0818 20 7 12.9994 -2.2027 0.9088 21 14 15.2448 -2.5767 2.4896 22 1 15.6174 -2.1493 3.8620 23 1 15.2522 -4.0598 2.4143 24 1 16.2228 -2.0269 1.5167 25 6 10.6663 -2.0410 2.1964 26 6 9.5200 -2.4620 3.1212 27 6 8.1979 -0.4971 2.3242 28 6 7.2948 -1.4488 1.5345 29 1 -1.0499 -0.0003 0.0004 30 1 3.0089 0.9233 0.4527 31 1 3.0093 -0.0683 -1.0254 32 1 4.7632 -1.5743 -1.2996 33 1 6.1422 -2.1194 -0.3154 34 1 4.6233 -3.0478 -0.3108 35 1 5.7838 -2.8313 4.2920 36 1 7.2061 -3.5283 3.4772 37 1 7.0086 -0.7623 4.7555 38 1 7.9653 -2.1417 5.3487 39 1 9.1048 0.5930 4.6649 40 1 10.0723 -0.8025 5.2005 41 1 11.5293 0.7543 3.9965 42 1 10.4203 0.7662 2.6027 43 1 13.4911 -2.7252 0.2561 44 1 11.2837 -2.9080 1.9617 45 1 10.2585 -1.6230 1.2761 46 1 9.9265 -2.9645 3.9989 47 1 8.8538 -3.1410 2.5888 48 1 9.0291 -0.1783 1.6953 49 1 7.6225 0.3744 2.6366 50 1 7.8885 -2.2752 1.1436 51 1 6.8281 -0.9118 0.7088 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674294516.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:36 Heat of formation + Delta-G solvation = 2.872529 kcal Electronic energy + Delta-G solvation = -30326.854451 eV Core-core repulsion = 26421.784285 eV Total energy + Delta-G solvation = -3905.070166 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.76642 -39.19453 -37.85652 -35.90350 -33.99813 -33.53974 -32.16063 -30.98285 -30.58807 -29.92498 -28.05748 -27.42190 -25.47646 -24.18906 -23.36450 -22.86868 -21.95095 -20.65571 -19.52693 -18.93407 -17.79899 -17.41354 -16.90730 -16.39567 -16.12819 -15.70058 -15.10783 -14.92957 -14.75832 -14.22045 -14.16757 -14.03577 -13.89629 -13.61808 -13.35668 -13.15268 -12.99087 -12.79389 -12.49923 -12.46616 -12.08562 -11.72788 -11.60024 -11.46431 -11.42716 -11.12454 -11.05477 -10.95786 -10.84604 -10.74387 -10.55775 -10.38857 -10.13211 -10.10511 -9.99777 -9.76014 -9.56517 -9.49248 -9.37059 -8.55112 -8.43347 -6.67438 -5.81856 -3.22748 2.08278 2.50063 2.56145 2.88212 3.34582 3.43230 3.45009 3.67661 4.16726 4.37251 4.47521 4.57461 4.72630 4.83212 4.85516 5.02671 5.03137 5.05566 5.20233 5.32047 5.34022 5.38445 5.39811 5.43996 5.48449 5.58907 5.67325 5.79240 5.85533 5.90624 5.92529 5.96499 6.09574 6.10965 6.20233 6.27157 6.34484 6.51424 6.52973 6.61221 6.72209 6.75711 6.79196 6.88104 6.96888 7.26057 7.34275 7.39305 7.63916 7.77976 8.14997 8.42891 9.19664 9.83298 10.39557 11.26453 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.022754 B = 0.002579 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.266787 B =10853.602450 C =11256.432953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.191 4.191 3 C 0.169 3.831 4 O -0.352 6.352 5 C 0.072 3.928 6 H 0.090 0.910 7 C -0.181 4.181 8 C 0.517 3.483 9 O -0.528 6.528 10 N -0.602 5.602 11 C 0.113 3.887 12 C -0.123 4.123 13 C -0.046 4.046 14 C -0.121 4.121 15 C 0.145 3.855 16 N -0.591 5.591 17 C -0.249 4.249 18 H 0.064 0.936 19 C 0.001 3.999 20 N -0.903 5.903 21 Si 0.900 3.100 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.291 1.291 25 C 0.172 3.828 26 C -0.135 4.135 27 C -0.126 4.126 28 C 0.098 3.902 29 H 0.222 0.778 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.047 0.953 40 H 0.058 0.942 41 H 0.050 0.950 42 H 0.018 0.982 43 H 0.252 0.748 44 H 0.084 0.916 45 H 0.019 0.981 46 H 0.054 0.946 47 H 0.050 0.950 48 H 0.092 0.908 49 H 0.057 0.943 50 H 0.081 0.919 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.533 3.910 -1.932 18.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.191 4.191 3 C 0.093 3.907 4 O -0.270 6.270 5 C 0.011 3.989 6 H 0.107 0.893 7 C -0.238 4.238 8 C 0.303 3.697 9 O -0.404 6.404 10 N -0.337 5.337 11 C -0.009 4.009 12 C -0.161 4.161 13 C -0.047 4.047 14 C -0.161 4.161 15 C 0.018 3.982 16 N -0.314 5.314 17 C -0.379 4.379 18 H 0.082 0.918 19 C -0.197 4.197 20 N -0.548 5.548 21 Si 0.730 3.270 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.218 1.218 25 C 0.046 3.954 26 C -0.174 4.174 27 C -0.163 4.163 28 C -0.024 4.024 29 H 0.239 0.761 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.036 0.964 43 H 0.062 0.938 44 H 0.102 0.898 45 H 0.037 0.963 46 H 0.073 0.927 47 H 0.068 0.932 48 H 0.110 0.890 49 H 0.076 0.924 50 H 0.100 0.900 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.016 3.457 -1.572 18.411 hybrid contribution 0.961 -0.133 -0.021 0.970 sum -17.055 3.324 -1.593 17.448 Atomic orbital electron populations 1.24960 0.95878 0.98455 0.99794 1.22438 0.93800 1.01729 1.01104 1.19186 0.85044 0.89902 0.96531 1.88107 1.19124 1.46438 1.73366 1.21906 0.82550 1.00226 0.94182 0.89258 1.22449 1.02852 1.01484 0.97041 1.20227 0.82328 0.79937 0.87200 1.90701 1.49813 1.48096 1.51784 1.48049 1.04998 1.58956 1.21669 1.21645 0.99021 0.95699 0.84493 1.22019 0.96510 0.99158 0.98423 1.20382 0.93660 0.96463 0.94154 1.22042 0.97300 0.97778 0.98952 1.20918 0.92890 0.89861 0.94487 1.44035 1.03656 1.17355 1.66332 1.19220 0.83241 1.30315 1.05075 0.91789 1.25003 0.97714 1.02349 0.94649 1.70032 1.38059 1.42147 1.04533 0.86263 0.84377 0.78596 0.77784 1.20323 1.21612 1.21797 1.20772 0.89830 0.93865 0.90925 1.22345 0.98474 0.95498 1.01054 1.22037 0.99146 0.97299 0.97867 1.22089 0.89557 0.98498 0.92245 0.76123 0.90599 0.90500 0.91062 0.89659 0.90936 0.89541 0.90975 0.92185 0.90901 0.93386 0.92313 0.93153 0.96380 0.93770 0.89765 0.96306 0.92677 0.93163 0.88984 0.92405 0.90043 0.90002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.56 19.25 29.55 0.57 -0.99 16 2 C -0.19 -2.03 13.73 -37.13 -0.51 -2.54 16 3 C 0.17 1.58 6.22 34.37 0.21 1.79 16 4 O -0.35 -4.51 9.48 -55.09 -0.52 -5.03 16 5 C 0.07 0.79 2.30 -27.88 -0.06 0.73 16 6 H 0.09 0.75 7.08 -51.93 -0.37 0.38 16 7 C -0.18 -1.62 9.10 37.16 0.34 -1.28 16 8 C 0.52 7.30 7.12 -10.99 -0.08 7.22 16 9 O -0.53 -9.61 15.92 -14.31 -0.23 -9.83 16 10 N -0.60 -7.71 2.97 -172.80 -0.51 -8.22 16 11 C 0.11 1.48 5.96 -3.71 -0.02 1.46 16 12 C -0.12 -1.60 4.90 -26.60 -0.13 -1.73 16 13 C -0.05 -0.68 0.51 -154.41 -0.08 -0.76 16 14 C -0.12 -1.94 4.90 -26.61 -0.13 -2.07 16 15 C 0.14 2.81 6.04 -3.72 -0.02 2.79 16 16 N -0.59 -13.80 3.00 -172.33 -0.52 -14.32 16 17 C -0.25 -6.56 9.59 -15.06 -0.14 -6.71 16 18 H 0.06 1.68 7.89 -52.49 -0.41 1.27 16 19 C 0.00 0.03 4.91 -17.43 -0.09 -0.06 16 20 N -0.90 -25.11 11.19 55.49 0.62 -24.49 16 21 Si 0.90 21.18 29.59 -169.99 -5.03 16.15 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 C 0.17 3.71 4.84 -3.72 -0.02 3.69 16 26 C -0.13 -2.29 4.14 -26.63 -0.11 -2.40 16 27 C -0.13 -1.67 4.15 -26.64 -0.11 -1.78 16 28 C 0.10 1.14 4.51 -3.74 -0.02 1.13 16 29 H 0.22 1.11 7.80 -54.10 -0.42 0.68 16 30 H 0.08 0.58 8.08 -51.93 -0.42 0.16 16 31 H 0.08 0.53 7.87 -51.92 -0.41 0.12 16 32 H 0.07 0.50 7.87 -51.93 -0.41 0.09 16 33 H 0.08 0.71 5.41 -51.93 -0.28 0.43 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 1.20 7.01 -51.93 -0.36 0.84 16 36 H 0.07 0.93 6.68 -51.93 -0.35 0.58 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.05 0.99 7.93 -51.93 -0.41 0.58 16 42 H 0.02 0.35 6.68 -51.93 -0.35 0.00 16 43 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 44 H 0.08 2.12 6.04 -51.93 -0.31 1.81 16 45 H 0.02 0.42 6.73 -51.93 -0.35 0.07 16 46 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16 47 H 0.05 0.78 4.99 -51.93 -0.26 0.52 16 48 H 0.09 1.41 4.99 -51.93 -0.26 1.15 16 49 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.08 1.01 6.73 -51.93 -0.35 0.66 16 51 H 0.08 0.75 4.66 -51.93 -0.24 0.51 16 LS Contribution 385.38 15.07 5.81 5.81 Total: -1.00 -32.41 385.38 -8.84 -41.25 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -8.06 Total: 0.18 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -0.40 Total: -1.50 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: -0.41 Total: -47.03 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -0.75 Total: -14.86 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.41 -8.84 -41.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674294516.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.124 kcal (2) G-P(sol) polarization free energy of solvation -32.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds