Wall clock time and date at job start Tue Mar 31 2020 17:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 O 1.42899 * 109.47522 * 326.14859 * 3 2 1 5 5 C 1.42897 * 114.00310 * 179.97438 * 4 3 2 6 6 H 1.09006 * 109.47070 * 29.99643 * 5 4 3 7 7 C 1.52998 * 109.47014 * 269.99441 * 5 4 3 8 8 C 1.50701 * 109.47392 * 149.99536 * 5 4 3 9 9 O 1.21288 * 119.99791 * 4.99760 * 8 5 4 10 10 N 1.34771 * 120.00195 * 185.00187 * 8 5 4 11 11 C 1.46928 * 120.64586 * 179.97438 * 10 8 5 12 12 C 1.53186 * 108.89141 * 233.59700 * 11 10 8 13 13 C 1.53074 * 109.32377 * 305.57545 * 12 11 10 14 14 C 1.53054 * 109.38573 * 181.10585 * 13 12 11 15 15 C 1.53177 * 109.32858 * 181.14415 * 14 13 12 16 16 N 1.46931 * 108.77427 * 305.35558 * 15 14 13 17 17 C 1.36943 * 120.64113 * 233.62283 * 16 15 14 18 18 H 1.08001 * 119.99722 * 27.68255 * 17 16 15 19 19 C 1.38810 * 120.00192 * 207.68500 * 17 16 15 20 20 N 1.31627 * 119.99639 * 17.36811 * 19 17 16 21 21 Si 1.86792 * 120.00091 * 197.36653 * 19 17 16 22 22 H 1.48499 * 109.47326 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47015 * 120.00142 * 21 19 17 24 24 H 1.48497 * 109.47186 * 239.99971 * 21 19 17 25 25 C 1.46922 * 118.71933 * 53.64155 * 16 15 14 26 26 C 1.53023 * 109.33598 * 301.06287 * 13 12 11 27 27 C 1.53034 * 109.66880 * 61.08653 * 13 12 11 28 28 C 1.46931 * 120.64341 * 0.02562 * 10 8 5 29 29 H 4.38449 * 5.44536 * 179.97438 * 4 1 2 30 30 H 1.08990 * 109.47301 * 206.14079 * 3 2 1 31 31 H 1.09010 * 109.46957 * 86.14277 * 3 2 1 32 32 H 1.08999 * 109.46813 * 60.00089 * 7 5 4 33 33 H 1.08996 * 109.47235 * 179.97438 * 7 5 4 34 34 H 1.08997 * 109.47150 * 300.00194 * 7 5 4 35 35 H 1.08997 * 109.58495 * 353.45786 * 11 10 8 36 36 H 1.09001 * 109.58844 * 113.73891 * 11 10 8 37 37 H 1.08995 * 109.49369 * 65.39948 * 12 11 10 38 38 H 1.09006 * 109.48913 * 185.47509 * 12 11 10 39 39 H 1.09001 * 109.49655 * 301.10502 * 14 13 12 40 40 H 1.09003 * 109.48846 * 61.18872 * 14 13 12 41 41 H 1.09001 * 109.58503 * 185.56723 * 15 14 13 42 42 H 1.09000 * 109.70702 * 65.21690 * 15 14 13 43 43 H 0.96997 * 119.99779 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.58476 * 186.58599 * 25 16 15 45 45 H 1.08997 * 109.69864 * 66.23388 * 25 16 15 46 46 H 1.09010 * 109.49255 * 298.81025 * 26 13 12 47 47 H 1.09001 * 109.49162 * 58.88454 * 26 13 12 48 48 H 1.09000 * 109.49024 * 178.81538 * 27 13 12 49 49 H 1.08999 * 109.49166 * 58.73447 * 27 13 12 50 50 H 1.09006 * 109.58640 * 246.12452 * 28 10 8 51 51 H 1.08992 * 109.58868 * 6.40220 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1229 -1.1180 0.7505 5 6 4.5474 -1.2114 0.8128 6 1 4.9797 -0.2120 0.7609 7 6 5.0556 -2.0485 -0.3627 8 6 4.9517 -1.8669 2.1082 9 8 4.1036 -2.3011 2.8586 10 7 6.2557 -1.9705 2.4327 11 6 6.6657 -2.6064 3.6922 12 6 7.5772 -1.6440 4.4600 13 6 8.7400 -1.2204 3.5591 14 6 9.6667 -0.2804 4.3339 15 6 10.8142 0.1652 3.4223 16 7 11.4800 -1.0281 2.8824 17 6 12.8329 -1.1929 3.0157 18 1 13.3526 -0.7407 3.8474 19 6 13.5363 -1.9411 2.0818 20 7 12.9994 -2.2027 0.9088 21 14 15.2448 -2.5767 2.4896 22 1 15.6174 -2.1493 3.8620 23 1 15.2522 -4.0598 2.4143 24 1 16.2228 -2.0269 1.5167 25 6 10.6663 -2.0410 2.1964 26 6 9.5200 -2.4620 3.1212 27 6 8.1979 -0.4971 2.3242 28 6 7.2948 -1.4488 1.5345 29 1 -1.0499 -0.0003 0.0004 30 1 3.0089 0.9233 0.4527 31 1 3.0093 -0.0683 -1.0254 32 1 4.7632 -1.5743 -1.2996 33 1 6.1422 -2.1194 -0.3154 34 1 4.6233 -3.0478 -0.3108 35 1 5.7838 -2.8313 4.2920 36 1 7.2061 -3.5283 3.4772 37 1 7.0086 -0.7623 4.7555 38 1 7.9653 -2.1417 5.3487 39 1 9.1048 0.5930 4.6649 40 1 10.0723 -0.8025 5.2005 41 1 11.5293 0.7543 3.9965 42 1 10.4203 0.7662 2.6027 43 1 13.4911 -2.7252 0.2561 44 1 11.2837 -2.9080 1.9617 45 1 10.2585 -1.6230 1.2761 46 1 9.9265 -2.9645 3.9989 47 1 8.8538 -3.1410 2.5888 48 1 9.0291 -0.1783 1.6953 49 1 7.6225 0.3744 2.6366 50 1 7.8885 -2.2752 1.1436 51 1 6.8281 -0.9118 0.7088 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674294516.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:35 Heat of formation + Delta-G solvation = -15.361731 kcal Electronic energy + Delta-G solvation = -30327.645148 eV Core-core repulsion = 26421.784285 eV Total energy + Delta-G solvation = -3905.860863 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.85886 -40.33484 -38.83099 -37.31605 -35.29642 -34.45556 -33.37902 -32.42319 -31.65141 -31.37293 -29.47198 -28.09749 -26.89928 -25.49018 -24.43397 -24.14447 -23.43593 -21.95533 -20.67219 -19.72841 -19.21091 -18.42295 -18.06254 -17.66123 -17.05348 -16.83310 -16.53065 -16.07520 -15.74567 -15.66147 -15.46520 -15.20688 -15.07017 -14.92619 -14.61313 -14.42613 -14.19109 -13.98655 -13.52507 -13.30070 -13.20659 -13.11209 -12.91383 -12.80572 -12.78626 -12.53862 -12.41852 -12.19456 -12.13159 -11.96004 -11.74190 -11.70042 -11.58685 -11.56749 -11.15393 -11.02518 -10.89399 -10.80836 -10.44705 -10.44114 -9.61017 -8.57448 -7.82987 -5.25350 1.32931 1.45741 1.49216 1.51581 1.57977 1.81495 1.96085 2.53685 2.95370 3.30747 3.35845 3.63549 3.74309 3.80569 3.83455 3.87491 3.93098 4.01223 4.16149 4.25463 4.25915 4.37457 4.45882 4.48568 4.62113 4.65236 4.67388 4.69402 4.72200 4.80773 4.82721 4.87135 4.91113 5.01249 5.07308 5.09236 5.11229 5.18169 5.22618 5.38666 5.39781 5.45574 5.49451 5.61749 5.61931 5.72402 5.92295 5.98967 6.37508 6.45076 6.59345 7.10352 7.21910 7.95289 8.44523 9.22203 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.022754 B = 0.002579 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.266787 B =10853.602450 C =11256.432953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.238 4.238 3 C 0.162 3.838 4 O -0.385 6.385 5 C 0.074 3.926 6 H 0.121 0.879 7 C -0.176 4.176 8 C 0.511 3.489 9 O -0.577 6.577 10 N -0.597 5.597 11 C 0.112 3.888 12 C -0.111 4.111 13 C -0.042 4.042 14 C -0.112 4.112 15 C 0.142 3.858 16 N -0.609 5.609 17 C -0.257 4.257 18 H 0.060 0.940 19 C -0.049 4.049 20 N -0.929 5.929 21 Si 0.957 3.043 22 H -0.271 1.271 23 H -0.292 1.292 24 H -0.293 1.293 25 C 0.181 3.819 26 C -0.120 4.120 27 C -0.121 4.121 28 C 0.101 3.899 29 H 0.252 0.748 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.048 0.952 41 H 0.042 0.958 42 H 0.025 0.975 43 H 0.248 0.752 44 H 0.043 0.957 45 H 0.012 0.988 46 H 0.041 0.959 47 H 0.066 0.934 48 H 0.073 0.927 49 H 0.075 0.925 50 H 0.075 0.925 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.765 5.087 -2.119 19.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.238 4.238 3 C 0.088 3.912 4 O -0.304 6.304 5 C 0.014 3.986 6 H 0.138 0.862 7 C -0.234 4.234 8 C 0.300 3.700 9 O -0.456 6.456 10 N -0.330 5.330 11 C -0.010 4.010 12 C -0.149 4.149 13 C -0.042 4.042 14 C -0.150 4.150 15 C 0.017 3.983 16 N -0.332 5.332 17 C -0.387 4.387 18 H 0.077 0.923 19 C -0.244 4.244 20 N -0.575 5.575 21 Si 0.787 3.213 22 H -0.196 1.196 23 H -0.219 1.219 24 H -0.220 1.220 25 C 0.055 3.945 26 C -0.159 4.159 27 C -0.158 4.158 28 C -0.021 4.021 29 H 0.269 0.731 30 H 0.110 0.890 31 H 0.119 0.881 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.043 0.957 43 H 0.057 0.943 44 H 0.061 0.939 45 H 0.030 0.970 46 H 0.060 0.940 47 H 0.084 0.916 48 H 0.091 0.909 49 H 0.094 0.906 50 H 0.093 0.907 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -19.240 4.658 -1.751 19.873 hybrid contribution 1.301 -0.458 0.049 1.381 sum -17.938 4.200 -1.702 18.502 Atomic orbital electron populations 1.25864 0.96908 0.96985 0.98462 1.23134 0.95049 1.03154 1.02472 1.19467 0.84631 0.89498 0.97635 1.88061 1.20044 1.48027 1.74287 1.22009 0.82295 1.01647 0.92689 0.86193 1.22442 1.03034 1.00524 0.97355 1.20906 0.81990 0.79229 0.87885 1.90675 1.51060 1.50295 1.53554 1.48084 1.05043 1.58333 1.21537 1.21610 0.98644 0.95902 0.84821 1.21892 0.95526 0.99440 0.98054 1.20330 0.93721 0.95059 0.95122 1.21918 0.96377 0.98965 0.97786 1.21057 0.93664 0.88623 0.95002 1.44284 1.03153 1.19159 1.66655 1.19473 0.84877 1.29784 1.04588 0.92269 1.25642 1.00880 1.03164 0.94733 1.70156 1.39171 1.43006 1.05214 0.85353 0.80741 0.77590 0.77644 1.19557 1.21909 1.22032 1.20573 0.90218 0.91963 0.91708 1.22134 0.97278 0.96938 0.99524 1.21957 0.98917 0.98082 0.96891 1.22153 0.89131 0.98246 0.92549 0.73134 0.89031 0.88075 0.88615 0.88915 0.92623 0.90393 0.90908 0.91349 0.90380 0.90617 0.93288 0.93898 0.95734 0.94255 0.93851 0.96967 0.94026 0.91580 0.90858 0.90629 0.90690 0.86915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.70 19.25 74.32 1.43 -1.27 16 2 C -0.24 -4.76 13.73 31.12 0.43 -4.34 16 3 C 0.16 2.72 6.22 70.17 0.44 3.16 16 4 O -0.38 -9.31 9.48 -129.99 -1.23 -10.54 16 5 C 0.07 1.44 2.30 29.85 0.07 1.51 16 6 H 0.12 1.55 7.08 -2.38 -0.02 1.54 16 7 C -0.18 -2.71 9.10 71.98 0.66 -2.06 16 8 C 0.51 13.71 7.12 87.66 0.62 14.33 16 9 O -0.58 -20.85 15.92 15.93 0.25 -20.60 16 10 N -0.60 -14.10 2.97 -819.00 -2.44 -16.53 16 11 C 0.11 2.77 5.96 86.36 0.51 3.29 16 12 C -0.11 -2.63 4.90 30.68 0.15 -2.48 16 13 C -0.04 -1.15 0.51 -52.12 -0.03 -1.17 16 14 C -0.11 -3.34 4.90 30.67 0.15 -3.19 16 15 C 0.14 5.37 6.04 86.36 0.52 5.90 16 16 N -0.61 -28.60 3.00 -699.14 -2.09 -30.70 16 17 C -0.26 -13.70 9.59 84.03 0.81 -12.90 16 18 H 0.06 3.15 7.89 -2.91 -0.02 3.12 16 19 C -0.05 -2.65 4.91 84.86 0.42 -2.23 16 20 N -0.93 -52.78 11.19 21.65 0.24 -52.54 16 21 Si 0.96 44.18 29.59 68.60 2.03 46.20 16 22 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 23 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 24 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 25 C 0.18 7.90 4.84 86.36 0.42 8.32 16 26 C -0.12 -4.00 4.14 30.66 0.13 -3.87 16 27 C -0.12 -2.90 4.15 30.65 0.13 -2.77 16 28 C 0.10 2.08 4.51 86.34 0.39 2.47 16 29 H 0.25 1.91 7.80 -4.42 -0.03 1.88 16 30 H 0.09 1.17 8.08 -2.39 -0.02 1.15 16 31 H 0.10 1.12 7.87 -2.38 -0.02 1.10 16 32 H 0.10 1.01 7.87 -2.39 -0.02 1.00 16 33 H 0.09 1.27 5.41 -2.39 -0.01 1.26 16 34 H 0.05 1.05 8.14 -2.39 -0.02 1.04 16 35 H 0.08 2.11 7.01 -2.39 -0.02 2.09 16 36 H 0.07 1.78 6.68 -2.39 -0.02 1.77 16 37 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 39 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.04 1.66 7.93 -2.39 -0.02 1.64 16 42 H 0.02 0.91 6.68 -2.39 -0.02 0.90 16 43 H 0.25 13.72 8.31 -92.71 -0.77 12.95 16 44 H 0.04 2.25 6.04 -2.39 -0.01 2.23 16 45 H 0.01 0.55 6.73 -2.39 -0.02 0.53 16 46 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 47 H 0.07 1.99 4.99 -2.39 -0.01 1.98 16 48 H 0.07 2.10 4.99 -2.39 -0.01 2.09 16 49 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 50 H 0.07 1.70 6.73 -2.38 -0.02 1.68 16 51 H 0.11 1.66 4.66 -2.39 -0.01 1.64 16 Total: -1.00 -72.51 385.38 4.92 -67.59 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 0.92 Total: 14.41 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: 7.24 Total: 2.70 kcal Atomic # 7 Polarization: -95.48 SS G_CDS: -4.29 Total: -99.77 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -0.98 Total: -31.14 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -72.51 4.92 -67.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674294516.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.231 kcal (2) G-P(sol) polarization free energy of solvation -72.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds