Wall clock time and date at job start Tue Mar 31 2020 17:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46697 * 2 1 4 4 C 1.50700 * 109.47046 * 239.99999 * 2 1 3 5 5 C 1.38267 * 119.94087 * 59.72939 * 4 2 1 6 6 C 1.38155 * 120.05429 * 179.72467 * 5 4 2 7 7 C 1.38732 * 119.93782 * 0.56719 * 6 5 4 8 8 O 1.35901 * 120.05139 * 179.68598 * 7 6 5 9 9 C 1.42903 * 117.00096 * 0.02562 * 8 7 6 10 10 C 1.50699 * 109.47069 * 180.02562 * 9 8 7 11 11 O 1.21286 * 120.00287 * 0.02562 * 10 9 8 12 12 N 1.34769 * 119.99991 * 180.02562 * 10 9 8 13 13 C 1.46501 * 120.00319 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.47380 * 180.02562 * 13 12 10 15 15 H 1.08993 * 109.46818 * 294.99439 * 14 13 12 16 16 C 1.53000 * 109.46867 * 174.99724 * 14 13 12 17 17 N 1.46496 * 109.47247 * 54.99754 * 14 13 12 18 18 C 1.46502 * 119.99966 * 60.00116 * 17 14 13 19 19 C 1.36937 * 120.00079 * 240.00143 * 17 14 13 20 20 H 1.08002 * 119.99794 * 22.81495 * 19 17 14 21 21 C 1.38811 * 119.99604 * 202.82031 * 19 17 14 22 22 N 1.31616 * 120.00537 * 11.59711 * 21 19 17 23 23 Si 1.86810 * 119.99311 * 191.59381 * 21 19 17 24 24 H 1.48498 * 109.47157 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.46543 * 120.00132 * 23 21 19 26 26 H 1.48501 * 109.46861 * 239.99773 * 23 21 19 27 27 C 1.38728 * 119.89191 * 359.70261 * 7 6 5 28 28 C 1.38148 * 119.94439 * 0.02562 * 27 7 6 29 29 H 1.09002 * 109.46928 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47332 * 299.99456 * 1 2 3 31 31 H 1.08996 * 109.47542 * 60.00410 * 1 2 3 32 32 H 1.08998 * 109.47114 * 119.99897 * 2 1 3 33 33 H 1.08998 * 109.47255 * 299.99811 * 3 2 1 34 34 H 1.09001 * 109.47283 * 60.00390 * 3 2 1 35 35 H 1.08998 * 109.46791 * 180.02562 * 3 2 1 36 36 H 1.07997 * 119.97488 * 359.96928 * 5 4 2 37 37 H 1.07993 * 120.02880 * 180.24678 * 6 5 4 38 38 H 1.08995 * 109.46872 * 300.00349 * 9 8 7 39 39 H 1.09003 * 109.46516 * 60.00445 * 9 8 7 40 40 H 0.97001 * 120.00703 * 0.02562 * 12 10 9 41 41 H 1.09000 * 109.46858 * 300.00126 * 13 12 10 42 42 H 1.08996 * 109.47276 * 59.99674 * 13 12 10 43 43 H 1.08999 * 109.47170 * 59.99940 * 16 14 13 44 44 H 1.09002 * 109.47250 * 179.97438 * 16 14 13 45 45 H 1.08997 * 109.47648 * 299.99582 * 16 14 13 46 46 H 1.08999 * 109.47516 * 93.84596 * 18 17 14 47 47 H 1.09006 * 109.47294 * 213.84998 * 18 17 14 48 48 H 1.09002 * 109.47205 * 333.84971 * 18 17 14 49 49 H 0.97004 * 119.99960 * 180.02562 * 22 21 19 50 50 H 1.08001 * 120.02906 * 179.97438 * 27 7 6 51 51 H 1.08000 * 119.97088 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6929 -0.2402 -2.4857 6 6 2.1568 -0.8863 -3.6153 7 6 2.9541 -2.0147 -3.4893 8 8 3.4064 -2.6558 -4.5989 9 6 3.0226 -2.1126 -5.8638 10 6 3.6123 -2.9495 -6.9696 11 8 4.2938 -3.9162 -6.7011 12 7 3.3825 -2.6237 -8.2570 13 6 3.9553 -3.4375 -9.3321 14 6 3.5455 -2.8551 -10.6863 15 1 2.4654 -2.9386 -10.8058 16 6 4.2438 -3.6288 -11.8064 17 7 3.9363 -1.4447 -10.7498 18 6 5.3457 -1.0683 -10.6145 19 6 2.9843 -0.4781 -10.9355 20 1 1.9553 -0.6763 -10.6739 21 6 3.3418 0.7564 -11.4600 22 7 4.5349 0.9261 -11.9891 23 14 2.1292 2.1768 -11.4149 24 1 0.8673 1.7301 -10.7721 25 1 2.7107 3.2993 -10.6360 26 1 1.8462 2.6300 -12.8005 27 6 3.2886 -2.4876 -2.2287 28 6 2.8268 -1.8347 -1.1023 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1299 1.4425 -0.0005 36 1 1.0680 0.6351 -2.5832 37 1 1.8947 -0.5164 -4.5955 38 1 1.9357 -2.1162 -5.9459 39 1 3.3899 -1.0897 -5.9463 40 1 2.8378 -1.8503 -8.4719 41 1 5.0422 -3.4351 -9.2499 42 1 3.5870 -4.4600 -9.2494 43 1 3.9531 -4.6782 -11.7592 44 1 3.9516 -3.2142 -12.7713 45 1 5.3240 -3.5453 -11.6870 46 1 5.7966 -0.9870 -11.6036 47 1 5.4180 -0.1089 -10.1022 48 1 5.8711 -1.8290 -10.0371 49 1 4.7848 1.7889 -12.3553 50 1 3.9088 -3.3661 -2.1281 51 1 3.0866 -2.2027 -0.1208 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674957982.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:42 Heat of formation + Delta-G solvation = -39.392114 kcal Electronic energy + Delta-G solvation = -28482.864056 eV Core-core repulsion = 24575.961157 eV Total energy + Delta-G solvation = -3906.902899 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.49098 -39.33859 -38.02444 -36.69706 -34.95661 -33.84577 -32.13133 -31.22347 -29.87060 -29.31927 -28.12563 -27.42690 -26.08074 -25.30341 -23.51229 -23.12620 -22.50240 -20.27706 -20.12982 -19.35205 -18.41921 -17.11724 -16.91089 -16.33462 -16.15662 -15.54039 -15.43276 -15.27526 -14.57805 -14.47483 -14.38304 -13.96749 -13.76948 -13.68895 -13.50117 -13.16182 -12.85612 -12.81114 -12.65290 -12.49349 -12.42892 -12.25597 -11.97783 -11.52342 -11.47777 -11.42468 -11.12078 -11.04100 -10.93159 -10.88966 -10.82243 -10.78726 -10.45505 -10.32087 -9.96351 -9.83790 -9.57268 -9.15197 -8.67279 -8.61290 -8.19287 -6.86736 -5.81820 -3.29661 1.19150 1.27178 2.68814 2.83374 3.29340 3.35855 3.38660 3.59245 3.87746 4.38561 4.42665 4.51236 4.69098 4.79261 4.91555 4.92815 5.02487 5.08217 5.15322 5.17882 5.30663 5.31562 5.32836 5.36493 5.46985 5.53875 5.54118 5.59158 5.67814 5.86231 5.86667 5.93495 5.94642 6.05349 6.14829 6.15053 6.23282 6.26068 6.39810 6.47583 6.60633 6.70756 6.79999 6.81202 6.97205 7.27806 7.34003 7.65068 7.73505 7.89221 8.29491 8.50587 9.13685 9.76599 10.26339 11.22521 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011803 B = 0.002513 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.771956 B =11140.107906 C =12968.418323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.051 4.051 3 C -0.145 4.145 4 C -0.120 4.120 5 C -0.073 4.073 6 C -0.207 4.207 7 C 0.129 3.871 8 O -0.289 6.289 9 C 0.041 3.959 10 C 0.511 3.489 11 O -0.535 6.535 12 N -0.701 5.701 13 C 0.108 3.892 14 C 0.157 3.843 15 H 0.069 0.931 16 C -0.156 4.156 17 N -0.595 5.595 18 C 0.165 3.835 19 C -0.263 4.263 20 H 0.069 0.931 21 C 0.005 3.995 22 N -0.902 5.902 23 Si 0.903 3.097 24 H -0.278 1.278 25 H -0.290 1.290 26 H -0.290 1.290 27 C -0.148 4.148 28 C -0.079 4.079 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.123 0.877 37 H 0.130 0.870 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.411 0.589 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.042 0.958 44 H 0.059 0.941 45 H 0.050 0.950 46 H 0.027 0.973 47 H 0.043 0.957 48 H -0.002 1.002 49 H 0.252 0.748 50 H 0.131 0.869 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.440 -2.798 20.180 21.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.070 4.070 3 C -0.202 4.202 4 C -0.120 4.120 5 C -0.091 4.091 6 C -0.226 4.226 7 C 0.084 3.916 8 O -0.202 6.202 9 C -0.038 4.038 10 C 0.295 3.705 11 O -0.412 6.412 12 N -0.353 5.353 13 C -0.017 4.017 14 C 0.049 3.951 15 H 0.087 0.913 16 C -0.216 4.216 17 N -0.318 5.318 18 C 0.020 3.980 19 C -0.392 4.392 20 H 0.087 0.913 21 C -0.194 4.194 22 N -0.547 5.547 23 Si 0.733 3.267 24 H -0.203 1.203 25 H -0.217 1.217 26 H -0.217 1.217 27 C -0.167 4.167 28 C -0.097 4.097 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.141 0.859 37 H 0.148 0.852 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.248 0.752 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.061 0.939 44 H 0.078 0.922 45 H 0.069 0.931 46 H 0.046 0.954 47 H 0.061 0.939 48 H 0.016 0.984 49 H 0.063 0.937 50 H 0.149 0.851 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.745 -3.496 20.256 21.343 hybrid contribution -0.875 1.503 -0.478 1.803 sum -6.620 -1.993 19.778 20.951 Atomic orbital electron populations 1.21872 0.94528 1.01980 1.01829 1.20042 0.95771 0.95914 0.95255 1.21873 1.01316 0.95223 1.01834 1.19742 1.00518 0.97122 0.94636 1.20751 0.98207 0.98869 0.91315 1.21319 1.03248 0.97909 1.00118 1.19095 0.93851 0.91701 0.86982 1.86153 1.70253 1.51946 1.11811 1.22518 1.00789 0.98269 0.82196 1.19889 0.81536 0.85385 0.83665 1.90707 1.38768 1.28288 1.83472 1.45728 1.53125 1.32234 1.04261 1.21994 0.98612 0.93377 0.87720 1.20623 0.98123 0.85995 0.90399 0.91290 1.22181 1.00934 0.98285 1.00209 1.44005 1.04274 0.99302 1.84191 1.20732 0.83243 0.95879 0.98120 1.19231 0.90367 0.92800 1.36793 0.91289 1.25052 0.96884 0.99178 0.98258 1.70080 1.19723 1.23260 1.41591 0.86228 0.80426 0.82699 0.77387 1.20317 1.21658 1.21725 1.20426 1.04310 1.02574 0.89360 1.20835 0.96490 0.94567 0.97799 0.92546 0.92533 0.92471 0.90641 0.92453 0.92533 0.92497 0.85897 0.85205 0.89148 0.88798 0.75247 0.91924 0.92282 0.93927 0.92163 0.93121 0.95422 0.93865 0.98353 0.93719 0.85090 0.85552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.00 37.16 0.33 -0.63 16 2 C -0.05 -0.38 3.09 -91.77 -0.28 -0.66 16 3 C -0.15 -1.00 9.01 37.16 0.33 -0.66 16 4 C -0.12 -1.13 4.78 -104.60 -0.50 -1.63 16 5 C -0.07 -0.73 8.70 -39.60 -0.34 -1.08 16 6 C -0.21 -2.34 9.04 -39.43 -0.36 -2.70 16 7 C 0.13 1.69 6.69 -39.22 -0.26 1.43 16 8 O -0.29 -4.41 9.67 -39.34 -0.38 -4.79 16 9 C 0.04 0.55 5.22 36.01 0.19 0.74 16 10 C 0.51 8.62 7.91 -10.99 -0.09 8.54 16 11 O -0.54 -11.04 16.50 -14.36 -0.24 -11.28 16 12 N -0.70 -11.57 5.39 -60.30 -0.32 -11.90 16 13 C 0.11 1.87 4.93 -4.04 -0.02 1.85 16 14 C 0.16 2.92 2.87 -67.93 -0.19 2.72 16 15 H 0.07 1.26 7.86 -51.93 -0.41 0.85 16 16 C -0.16 -2.70 9.19 37.16 0.34 -2.35 16 17 N -0.59 -13.39 2.29 -173.49 -0.40 -13.79 16 18 C 0.16 3.86 8.00 59.85 0.48 4.34 16 19 C -0.26 -6.48 9.33 -15.06 -0.14 -6.62 16 20 H 0.07 1.63 7.82 -52.49 -0.41 1.22 16 21 C 0.01 0.14 5.12 -17.43 -0.09 0.05 16 22 N -0.90 -25.06 10.63 55.49 0.59 -24.47 16 23 Si 0.90 20.47 29.57 -169.99 -5.03 15.44 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 C -0.15 -1.73 9.99 -39.43 -0.39 -2.12 16 28 C -0.08 -0.77 9.66 -39.61 -0.38 -1.15 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.38 7.37 -51.93 -0.38 0.00 16 32 H 0.08 0.49 7.87 -51.93 -0.41 0.08 16 33 H 0.06 0.40 7.40 -51.93 -0.38 0.02 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.12 1.02 7.09 -52.49 -0.37 0.65 16 37 H 0.13 1.29 6.30 -52.49 -0.33 0.96 16 38 H 0.09 0.98 7.66 -51.93 -0.40 0.58 16 39 H 0.09 1.13 7.66 -51.93 -0.40 0.73 16 40 H 0.41 6.63 7.89 -40.82 -0.32 6.31 16 41 H 0.06 1.17 6.86 -51.93 -0.36 0.81 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 45 H 0.05 0.89 7.67 -51.93 -0.40 0.49 16 46 H 0.03 0.71 7.43 -51.93 -0.39 0.32 16 47 H 0.04 1.10 7.20 -51.93 -0.37 0.72 16 48 H 0.00 -0.04 6.53 -51.93 -0.34 -0.38 16 49 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 50 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 51 H 0.13 0.93 7.94 -52.49 -0.42 0.51 16 LS Contribution 409.82 15.07 6.18 6.18 Total: -1.00 -30.65 409.82 -9.58 -40.23 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -8.60 Total: 4.31 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -1.38 Total: 0.07 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: -0.13 Total: -50.16 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.62 Total: -16.07 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.03 Total: 15.44 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -30.65 -9.58 -40.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674957982.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.838 kcal (2) G-P(sol) polarization free energy of solvation -30.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds