Wall clock time and date at job start Tue Mar 31 2020 17:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46697 * 2 1 4 4 C 1.50700 * 109.47046 * 239.99999 * 2 1 3 5 5 C 1.38267 * 119.94087 * 59.72939 * 4 2 1 6 6 C 1.38155 * 120.05429 * 179.72467 * 5 4 2 7 7 C 1.38732 * 119.93782 * 0.56719 * 6 5 4 8 8 O 1.35901 * 120.05139 * 179.68598 * 7 6 5 9 9 C 1.42903 * 117.00096 * 0.02562 * 8 7 6 10 10 C 1.50699 * 109.47069 * 180.02562 * 9 8 7 11 11 O 1.21286 * 120.00287 * 0.02562 * 10 9 8 12 12 N 1.34769 * 119.99991 * 180.02562 * 10 9 8 13 13 C 1.46501 * 120.00319 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.47380 * 180.02562 * 13 12 10 15 15 H 1.08993 * 109.46818 * 294.99439 * 14 13 12 16 16 C 1.53000 * 109.46867 * 174.99724 * 14 13 12 17 17 N 1.46496 * 109.47247 * 54.99754 * 14 13 12 18 18 C 1.46502 * 119.99966 * 60.00116 * 17 14 13 19 19 C 1.36937 * 120.00079 * 240.00143 * 17 14 13 20 20 H 1.08002 * 119.99794 * 22.81495 * 19 17 14 21 21 C 1.38811 * 119.99604 * 202.82031 * 19 17 14 22 22 N 1.31616 * 120.00537 * 11.59711 * 21 19 17 23 23 Si 1.86810 * 119.99311 * 191.59381 * 21 19 17 24 24 H 1.48498 * 109.47157 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.46543 * 120.00132 * 23 21 19 26 26 H 1.48501 * 109.46861 * 239.99773 * 23 21 19 27 27 C 1.38728 * 119.89191 * 359.70261 * 7 6 5 28 28 C 1.38148 * 119.94439 * 0.02562 * 27 7 6 29 29 H 1.09002 * 109.46928 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47332 * 299.99456 * 1 2 3 31 31 H 1.08996 * 109.47542 * 60.00410 * 1 2 3 32 32 H 1.08998 * 109.47114 * 119.99897 * 2 1 3 33 33 H 1.08998 * 109.47255 * 299.99811 * 3 2 1 34 34 H 1.09001 * 109.47283 * 60.00390 * 3 2 1 35 35 H 1.08998 * 109.46791 * 180.02562 * 3 2 1 36 36 H 1.07997 * 119.97488 * 359.96928 * 5 4 2 37 37 H 1.07993 * 120.02880 * 180.24678 * 6 5 4 38 38 H 1.08995 * 109.46872 * 300.00349 * 9 8 7 39 39 H 1.09003 * 109.46516 * 60.00445 * 9 8 7 40 40 H 0.97001 * 120.00703 * 0.02562 * 12 10 9 41 41 H 1.09000 * 109.46858 * 300.00126 * 13 12 10 42 42 H 1.08996 * 109.47276 * 59.99674 * 13 12 10 43 43 H 1.08999 * 109.47170 * 59.99940 * 16 14 13 44 44 H 1.09002 * 109.47250 * 179.97438 * 16 14 13 45 45 H 1.08997 * 109.47648 * 299.99582 * 16 14 13 46 46 H 1.08999 * 109.47516 * 93.84596 * 18 17 14 47 47 H 1.09006 * 109.47294 * 213.84998 * 18 17 14 48 48 H 1.09002 * 109.47205 * 333.84971 * 18 17 14 49 49 H 0.97004 * 119.99960 * 180.02562 * 22 21 19 50 50 H 1.08001 * 120.02906 * 179.97438 * 27 7 6 51 51 H 1.08000 * 119.97088 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6929 -0.2402 -2.4857 6 6 2.1568 -0.8863 -3.6153 7 6 2.9541 -2.0147 -3.4893 8 8 3.4064 -2.6558 -4.5989 9 6 3.0226 -2.1126 -5.8638 10 6 3.6123 -2.9495 -6.9696 11 8 4.2938 -3.9162 -6.7011 12 7 3.3825 -2.6237 -8.2570 13 6 3.9553 -3.4375 -9.3321 14 6 3.5455 -2.8551 -10.6863 15 1 2.4654 -2.9386 -10.8058 16 6 4.2438 -3.6288 -11.8064 17 7 3.9363 -1.4447 -10.7498 18 6 5.3457 -1.0683 -10.6145 19 6 2.9843 -0.4781 -10.9355 20 1 1.9553 -0.6763 -10.6739 21 6 3.3418 0.7564 -11.4600 22 7 4.5349 0.9261 -11.9891 23 14 2.1292 2.1768 -11.4149 24 1 0.8673 1.7301 -10.7721 25 1 2.7107 3.2993 -10.6360 26 1 1.8462 2.6300 -12.8005 27 6 3.2886 -2.4876 -2.2287 28 6 2.8268 -1.8347 -1.1023 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1299 1.4425 -0.0005 36 1 1.0680 0.6351 -2.5832 37 1 1.8947 -0.5164 -4.5955 38 1 1.9357 -2.1162 -5.9459 39 1 3.3899 -1.0897 -5.9463 40 1 2.8378 -1.8503 -8.4719 41 1 5.0422 -3.4351 -9.2499 42 1 3.5870 -4.4600 -9.2494 43 1 3.9531 -4.6782 -11.7592 44 1 3.9516 -3.2142 -12.7713 45 1 5.3240 -3.5453 -11.6870 46 1 5.7966 -0.9870 -11.6036 47 1 5.4180 -0.1089 -10.1022 48 1 5.8711 -1.8290 -10.0371 49 1 4.7848 1.7889 -12.3553 50 1 3.9088 -3.3661 -2.1281 51 1 3.0866 -2.2027 -0.1208 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674957982.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:41 Heat of formation + Delta-G solvation = -55.128107 kcal Electronic energy + Delta-G solvation = -28483.546420 eV Core-core repulsion = 24575.961157 eV Total energy + Delta-G solvation = -3907.585263 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.47224 -40.53907 -39.01597 -38.28332 -35.66203 -35.44166 -33.79915 -32.04094 -31.31160 -30.56013 -29.13910 -28.01590 -27.92977 -26.62094 -24.91101 -24.26935 -23.38850 -21.47650 -20.97279 -20.87692 -19.36652 -18.86888 -18.20033 -17.48361 -17.21562 -17.03759 -16.58704 -16.30896 -15.99390 -15.45296 -15.39984 -15.26882 -14.88090 -14.61423 -14.48885 -14.34645 -14.21745 -13.98658 -13.86365 -13.62171 -13.38702 -13.28245 -13.06730 -12.94310 -12.85046 -12.67226 -12.54416 -12.26159 -12.18461 -12.10972 -12.04847 -11.77960 -11.72560 -11.66786 -11.50353 -11.46779 -10.94822 -10.61912 -10.03641 -9.95242 -9.04734 -8.77451 -7.78008 -5.26607 0.39152 0.44345 1.50053 1.50102 1.52810 1.60739 1.61299 2.53462 2.73387 2.78665 3.37960 3.58718 3.67072 3.79953 3.86868 3.92065 4.03908 4.05403 4.08515 4.18701 4.36101 4.37860 4.43751 4.49572 4.59956 4.60298 4.71090 4.73453 4.76258 4.85250 4.93116 4.98693 5.04377 5.04674 5.10008 5.15203 5.23790 5.34174 5.34826 5.38220 5.41995 5.43533 5.45931 5.53859 5.70037 5.74540 5.75914 5.83204 6.34841 6.36331 6.57445 7.16253 7.20283 7.89551 8.35850 9.25947 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011803 B = 0.002513 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.771956 B =11140.107906 C =12968.418323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.050 4.050 3 C -0.145 4.145 4 C -0.117 4.117 5 C -0.079 4.079 6 C -0.212 4.212 7 C 0.102 3.898 8 O -0.318 6.318 9 C 0.046 3.954 10 C 0.511 3.489 11 O -0.577 6.577 12 N -0.697 5.697 13 C 0.117 3.883 14 C 0.157 3.843 15 H 0.079 0.921 16 C -0.150 4.150 17 N -0.603 5.603 18 C 0.185 3.815 19 C -0.254 4.254 20 H 0.085 0.915 21 C -0.054 4.054 22 N -0.940 5.940 23 Si 0.964 3.036 24 H -0.257 1.257 25 H -0.298 1.298 26 H -0.302 1.302 27 C -0.164 4.164 28 C -0.080 4.080 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.049 0.951 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.120 0.880 39 H 0.108 0.892 40 H 0.415 0.585 41 H 0.046 0.954 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.042 0.958 45 H 0.042 0.958 46 H -0.001 1.001 47 H 0.016 0.984 48 H 0.017 0.983 49 H 0.244 0.756 50 H 0.129 0.871 51 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.595 -2.657 21.995 23.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.069 4.069 3 C -0.202 4.202 4 C -0.118 4.118 5 C -0.096 4.096 6 C -0.231 4.231 7 C 0.057 3.943 8 O -0.231 6.231 9 C -0.032 4.032 10 C 0.297 3.703 11 O -0.457 6.457 12 N -0.349 5.349 13 C -0.008 4.008 14 C 0.050 3.950 15 H 0.097 0.903 16 C -0.209 4.209 17 N -0.326 5.326 18 C 0.040 3.960 19 C -0.384 4.384 20 H 0.103 0.897 21 C -0.249 4.249 22 N -0.588 5.588 23 Si 0.793 3.207 24 H -0.181 1.181 25 H -0.225 1.225 26 H -0.230 1.230 27 C -0.182 4.182 28 C -0.098 4.098 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.104 0.896 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.158 0.842 37 H 0.159 0.841 38 H 0.137 0.863 39 H 0.126 0.874 40 H 0.252 0.748 41 H 0.065 0.935 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.017 0.983 47 H 0.035 0.965 48 H 0.035 0.965 49 H 0.054 0.946 50 H 0.147 0.853 51 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.942 -3.375 22.087 23.712 hybrid contribution -0.222 1.391 -0.963 1.707 sum -8.164 -1.984 21.124 22.733 Atomic orbital electron populations 1.21863 0.93871 1.01906 1.02446 1.20097 0.96244 0.95997 0.94522 1.21869 1.00891 0.94989 1.02435 1.20079 0.99525 0.96723 0.95435 1.21021 0.98175 0.99266 0.91186 1.21493 1.02934 0.97442 1.01218 1.19337 0.95425 0.92869 0.86636 1.86096 1.71293 1.53094 1.12649 1.22522 1.02160 0.97717 0.80779 1.20450 0.80666 0.84991 0.84238 1.90684 1.40715 1.30285 1.84064 1.45706 1.52839 1.32128 1.04245 1.21823 0.97717 0.94225 0.87073 1.20786 0.98831 0.83886 0.91484 0.90282 1.22078 1.00233 1.00064 0.98538 1.44153 1.03487 1.00945 1.84050 1.20371 0.84188 0.95116 0.96358 1.19652 0.91196 0.92944 1.34567 0.89738 1.25782 0.98350 1.01726 0.99014 1.70255 1.21704 1.23170 1.43624 0.85244 0.79302 0.79639 0.76473 1.18085 1.22525 1.22983 1.20629 1.04814 1.03009 0.89764 1.21125 0.96000 0.94442 0.98204 0.92964 0.91243 0.92586 0.89609 0.92645 0.91200 0.93167 0.84163 0.84099 0.86267 0.87394 0.74819 0.93519 0.90643 0.90483 0.93915 0.93915 0.98274 0.96502 0.96507 0.94650 0.85323 0.83252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.00 71.98 0.65 -0.89 16 2 C -0.05 -0.61 3.09 -11.54 -0.04 -0.64 16 3 C -0.14 -1.65 9.01 71.98 0.65 -1.00 16 4 C -0.12 -1.98 4.78 -19.85 -0.09 -2.07 16 5 C -0.08 -1.42 8.70 22.26 0.19 -1.23 16 6 C -0.21 -4.51 9.04 22.37 0.20 -4.31 16 7 C 0.10 2.62 6.69 22.51 0.15 2.77 16 8 O -0.32 -9.64 9.67 -73.39 -0.71 -10.35 16 9 C 0.05 1.19 5.22 71.24 0.37 1.56 16 10 C 0.51 16.83 7.91 87.66 0.69 17.52 16 11 O -0.58 -23.84 16.50 15.99 0.26 -23.57 16 12 N -0.70 -22.05 5.39 -463.07 -2.49 -24.54 16 13 C 0.12 3.86 4.93 86.38 0.43 4.29 16 14 C 0.16 5.58 2.87 44.99 0.13 5.71 16 15 H 0.08 2.67 7.86 -2.39 -0.02 2.66 16 16 C -0.15 -4.94 9.19 71.98 0.66 -4.28 16 17 N -0.60 -26.79 2.29 -702.78 -1.61 -28.39 16 18 C 0.18 8.79 8.00 127.77 1.02 9.81 16 19 C -0.25 -12.23 9.33 84.03 0.78 -11.45 16 20 H 0.08 3.77 7.82 -2.91 -0.02 3.75 16 21 C -0.05 -2.79 5.12 84.86 0.43 -2.36 16 22 N -0.94 -53.39 10.63 21.65 0.23 -53.16 16 23 Si 0.96 41.92 29.57 68.60 2.03 43.94 16 24 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 25 H -0.30 -13.23 7.11 99.48 0.71 -12.52 16 26 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 27 C -0.16 -3.77 9.99 22.37 0.22 -3.55 16 28 C -0.08 -1.44 9.66 22.25 0.22 -1.22 16 29 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.61 7.37 -2.39 -0.02 0.60 16 32 H 0.09 0.88 7.87 -2.39 -0.02 0.86 16 33 H 0.05 0.65 7.40 -2.39 -0.02 0.63 16 34 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.14 1.98 7.09 -2.91 -0.02 1.96 16 37 H 0.14 2.54 6.30 -2.91 -0.02 2.52 16 38 H 0.12 2.33 7.66 -2.39 -0.02 2.31 16 39 H 0.11 2.45 7.66 -2.39 -0.02 2.43 16 40 H 0.41 12.60 7.89 -92.71 -0.73 11.87 16 41 H 0.05 1.71 6.86 -2.39 -0.02 1.69 16 42 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 43 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.04 1.46 7.67 -2.39 -0.02 1.44 16 46 H 0.00 -0.06 7.43 -2.39 -0.02 -0.07 16 47 H 0.02 0.86 7.20 -2.38 -0.02 0.84 16 48 H 0.02 0.71 6.53 -2.39 -0.02 0.70 16 49 H 0.24 13.68 8.31 -92.71 -0.77 12.90 16 50 H 0.13 2.88 8.06 -2.91 -0.02 2.86 16 51 H 0.15 1.89 7.94 -2.91 -0.02 1.87 16 Total: -1.00 -66.90 409.82 4.56 -62.33 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: 0.18 Total: 25.07 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: 6.67 Total: 8.68 kcal Atomic # 7 Polarization: -102.23 SS G_CDS: -3.87 Total: -106.10 kcal Atomic # 8 Polarization: -33.48 SS G_CDS: -0.45 Total: -33.93 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.94 kcal Total: -66.90 4.56 -62.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674957982.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.206 kcal (2) G-P(sol) polarization free energy of solvation -66.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds