Wall clock time and date at job start Tue Mar 31 2020 19:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42903 * 109.47076 * 2 1 4 4 C 1.35896 * 117.00061 * 180.02562 * 3 2 1 5 5 C 1.38755 * 120.05700 * 0.02562 * 4 3 2 6 6 C 1.38120 * 119.94175 * 179.97438 * 5 4 3 7 7 C 1.38290 * 120.05907 * 359.74538 * 6 5 4 8 8 C 1.38239 * 120.10748 * 0.50988 * 7 6 5 9 9 C 1.50708 * 119.97023 * 179.76836 * 8 7 6 10 10 C 1.53004 * 109.47029 * 269.72180 * 9 8 7 11 11 C 1.50699 * 109.46843 * 179.97438 * 10 9 8 12 12 O 1.21283 * 120.00005 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99772 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99873 * 359.97438 * 13 11 10 15 15 C 1.46498 * 119.99828 * 180.27730 * 13 11 10 16 16 C 1.52999 * 109.47070 * 269.71859 * 15 13 11 17 17 H 1.09004 * 109.47136 * 295.00487 * 16 15 13 18 18 C 1.52996 * 109.47278 * 174.99995 * 16 15 13 19 19 N 1.46502 * 109.47046 * 55.00056 * 16 15 13 20 20 C 1.36938 * 120.00200 * 205.00100 * 19 16 15 21 21 H 1.07991 * 119.99977 * 0.02562 * 20 19 16 22 22 C 1.38816 * 119.99949 * 180.02562 * 20 19 16 23 23 N 1.31624 * 119.99883 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 119.99915 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47472 * 359.97438 * 24 22 20 26 26 H 1.48506 * 109.47368 * 120.00030 * 24 22 20 27 27 H 1.48499 * 109.47542 * 240.00069 * 24 22 20 28 28 C 1.38166 * 120.05958 * 359.49159 * 8 7 6 29 29 H 1.09003 * 109.47727 * 300.00612 * 1 2 3 30 30 H 1.09001 * 109.47523 * 60.00827 * 1 2 3 31 31 H 1.09005 * 109.46985 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47300 * 239.99568 * 2 1 3 33 33 H 1.09005 * 109.46834 * 119.98968 * 2 1 3 34 34 H 1.07996 * 120.02629 * 359.96140 * 5 4 3 35 35 H 1.07999 * 119.96612 * 180.02562 * 6 5 4 36 36 H 1.08001 * 119.94471 * 180.27928 * 7 6 5 37 37 H 1.09006 * 109.46965 * 149.72418 * 9 8 7 38 38 H 1.08997 * 109.46944 * 29.72378 * 9 8 7 39 39 H 1.08999 * 109.46770 * 59.99693 * 10 9 8 40 40 H 1.08997 * 109.46991 * 300.00228 * 10 9 8 41 41 H 1.08999 * 109.46892 * 90.00594 * 14 13 11 42 42 H 1.09000 * 109.46803 * 209.99767 * 14 13 11 43 43 H 1.09000 * 109.47214 * 330.00561 * 14 13 11 44 44 H 1.08993 * 109.47575 * 29.72405 * 15 13 11 45 45 H 1.09001 * 109.46870 * 149.72361 * 15 13 11 46 46 H 1.08990 * 109.47377 * 300.00032 * 18 16 15 47 47 H 1.09006 * 109.47114 * 60.00529 * 18 16 15 48 48 H 1.09000 * 109.47138 * 180.02562 * 18 16 15 49 49 H 0.97003 * 119.99967 * 24.99740 * 19 16 15 50 50 H 0.96999 * 119.99671 * 179.97438 * 23 22 20 51 51 H 1.08004 * 120.03306 * 180.23324 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3535 1.5254 -0.0005 5 6 4.1999 0.4259 -0.0016 6 6 5.5688 0.6096 -0.0027 7 6 6.0961 1.8880 -0.0080 8 6 5.2550 2.9851 -0.0017 9 6 5.8330 4.3769 -0.0022 10 6 6.0297 4.8480 1.4401 11 6 6.6083 6.2395 1.4395 12 8 6.8400 6.7995 0.3889 13 7 6.8682 6.8617 2.6064 14 6 6.5878 6.1855 3.8755 15 6 7.4250 8.2168 2.6058 16 6 8.9531 8.1403 2.6078 17 1 9.2931 7.6892 3.5400 18 6 9.5345 9.5498 2.4815 19 7 9.4026 7.3236 1.4777 20 6 10.6137 6.6869 1.5319 21 1 11.2374 6.7865 2.4079 22 6 11.0399 5.9135 0.4608 23 7 10.2795 5.7917 -0.6067 24 14 12.6923 5.0456 0.5345 25 1 13.3493 5.3413 1.8330 26 1 12.4882 3.5804 0.4048 27 1 13.5535 5.5256 -0.5760 28 6 3.8849 2.8067 -0.0006 29 1 -0.3635 0.5139 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 3.7886 -0.5727 -0.0014 35 1 6.2279 -0.2459 -0.0039 36 1 7.1668 2.0295 -0.0134 37 1 5.1500 5.0538 -0.5156 38 1 6.7938 4.3710 -0.5168 39 1 6.7127 4.1711 1.9534 40 1 5.0689 4.8538 1.9546 41 1 7.4671 5.6230 4.1894 42 1 6.3405 6.9269 4.6352 43 1 5.7474 5.5036 3.7458 44 1 7.0889 8.7474 1.7151 45 1 7.0867 8.7489 3.4950 46 1 9.1945 10.0009 1.5493 47 1 9.2001 10.1575 3.3224 48 1 10.6231 9.4953 2.4824 49 1 8.8422 7.2337 0.6910 50 1 10.5774 5.2515 -1.3552 51 1 3.2282 3.6641 0.0006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676488620.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:45 Heat of formation + Delta-G solvation = -44.905114 kcal Electronic energy + Delta-G solvation = -29110.386386 eV Core-core repulsion = 25203.244426 eV Total energy + Delta-G solvation = -3907.141960 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.24464 -39.40179 -37.82159 -35.94357 -34.27224 -33.52411 -32.21128 -31.87363 -29.97691 -29.27247 -28.51797 -26.93098 -25.83553 -24.33366 -23.56186 -23.00836 -22.48322 -20.63849 -19.84671 -18.55983 -17.91976 -17.17658 -16.32871 -16.28949 -16.09583 -15.98305 -15.60149 -15.28842 -14.54997 -14.32745 -13.71391 -13.65071 -13.60704 -13.35816 -13.28775 -13.03742 -12.85007 -12.81716 -12.37772 -12.21271 -12.16823 -12.00512 -11.89721 -11.74028 -11.58445 -11.39030 -11.28904 -11.11755 -10.86091 -10.79256 -10.77747 -10.59042 -10.56028 -10.28964 -9.94006 -9.49911 -9.12372 -8.79239 -8.72398 -8.17328 -7.98607 -6.75185 -5.57065 -2.86236 1.33837 1.49079 3.03328 3.32571 3.48440 3.54268 3.56544 3.58927 3.82110 4.60878 4.62223 4.69856 4.77263 4.87785 4.91196 5.03923 5.13869 5.23765 5.33811 5.40131 5.42868 5.45636 5.48387 5.50592 5.58513 5.62400 5.68507 5.69952 5.74061 5.83796 5.92018 5.98671 6.01377 6.08862 6.17609 6.26145 6.28878 6.34429 6.46542 6.50013 6.58064 6.74486 6.80865 6.83205 6.88371 7.05024 7.23157 7.36578 7.82371 7.96868 8.59529 8.90407 9.72075 10.36119 10.75486 11.63102 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012874 B = 0.002851 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.354797 B = 9817.537426 C =11384.324979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.319 6.319 4 C 0.125 3.875 5 C -0.218 4.218 6 C -0.080 4.080 7 C -0.148 4.148 8 C -0.032 4.032 9 C -0.069 4.069 10 C -0.125 4.125 11 C 0.522 3.478 12 O -0.516 6.516 13 N -0.612 5.612 14 C 0.083 3.917 15 C 0.111 3.889 16 C 0.154 3.846 17 H 0.042 0.958 18 C -0.164 4.164 19 N -0.721 5.721 20 C -0.236 4.236 21 H 0.064 0.936 22 C -0.013 4.013 23 N -0.918 5.918 24 Si 0.897 3.103 25 H -0.283 1.283 26 H -0.294 1.294 27 H -0.294 1.294 28 C -0.151 4.151 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.129 0.871 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.054 0.946 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.078 0.922 45 H 0.068 0.932 46 H 0.047 0.953 47 H 0.034 0.966 48 H 0.054 0.946 49 H 0.399 0.601 50 H 0.251 0.749 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.469 -9.395 6.560 21.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.233 6.233 4 C 0.080 3.920 5 C -0.237 4.237 6 C -0.098 4.098 7 C -0.166 4.166 8 C -0.032 4.032 9 C -0.106 4.106 10 C -0.165 4.165 11 C 0.310 3.690 12 O -0.391 6.391 13 N -0.346 5.346 14 C -0.060 4.060 15 C -0.013 4.013 16 C 0.042 3.958 17 H 0.060 0.940 18 C -0.225 4.225 19 N -0.367 5.367 20 C -0.368 4.368 21 H 0.082 0.918 22 C -0.210 4.210 23 N -0.567 5.567 24 Si 0.729 3.271 25 H -0.209 1.209 26 H -0.221 1.221 27 H -0.221 1.221 28 C -0.169 4.169 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.147 0.853 37 H 0.097 0.903 38 H 0.115 0.885 39 H 0.110 0.890 40 H 0.101 0.899 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.096 0.904 45 H 0.086 0.914 46 H 0.066 0.934 47 H 0.053 0.947 48 H 0.073 0.927 49 H 0.238 0.762 50 H 0.061 0.939 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -18.372 -9.040 6.013 21.340 hybrid contribution 1.096 -0.920 -0.052 1.432 sum -17.276 -9.960 5.961 20.813 Atomic orbital electron populations 1.21774 0.92885 1.02717 1.03539 1.22736 0.95719 0.82280 1.01286 1.86055 1.19352 1.28970 1.88918 1.18935 0.81939 0.94156 0.96937 1.21151 0.94475 0.97653 1.10392 1.20932 0.94172 0.97328 0.97345 1.21152 1.00516 0.91838 1.03112 1.19823 0.92023 0.96004 0.95374 1.20411 1.03241 0.90903 0.96086 1.21549 1.01606 0.94809 0.98497 1.20333 0.77780 0.87567 0.83367 1.90695 1.51330 1.66498 1.30567 1.47585 1.64373 1.16774 1.05831 1.21697 1.00746 0.97664 0.85942 1.21819 0.95128 0.82518 1.01822 1.20636 0.90906 0.91275 0.92938 0.94023 1.22415 1.01757 0.98651 0.99630 1.42728 1.21024 1.55873 1.17059 1.19236 0.95095 1.22030 1.00438 0.91806 1.24717 0.98123 1.01301 0.96812 1.69758 1.36715 1.43973 1.06219 0.86270 0.84518 0.79348 0.76987 1.20856 1.22114 1.22094 1.20325 0.94728 0.94663 1.07214 0.91534 0.91520 0.90501 0.92174 0.92176 0.85995 0.85933 0.85303 0.90325 0.88547 0.89008 0.89901 0.92717 0.91727 0.91633 0.90403 0.91380 0.93402 0.94695 0.92734 0.76229 0.93920 0.85363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.28 37.16 0.38 -0.55 16 2 C 0.06 0.44 5.46 37.16 0.20 0.65 16 3 O -0.32 -3.74 10.14 -19.41 -0.20 -3.94 16 4 C 0.13 1.59 6.69 -39.21 -0.26 1.33 16 5 C -0.22 -2.52 9.04 -39.43 -0.36 -2.88 16 6 C -0.08 -0.97 10.04 -39.61 -0.40 -1.36 16 7 C -0.15 -2.08 9.70 -39.56 -0.38 -2.46 16 8 C -0.03 -0.46 5.13 -104.64 -0.54 -1.00 16 9 C -0.07 -1.11 4.63 -27.88 -0.13 -1.23 16 10 C -0.12 -1.92 4.23 -27.88 -0.12 -2.03 16 11 C 0.52 9.97 6.98 -10.99 -0.08 9.89 16 12 O -0.52 -12.12 13.31 5.55 0.07 -12.05 16 13 N -0.61 -10.32 2.77 -181.57 -0.50 -10.83 16 14 C 0.08 1.03 10.29 59.85 0.62 1.65 16 15 C 0.11 1.92 5.19 -4.04 -0.02 1.89 16 16 C 0.15 3.18 3.20 -67.93 -0.22 2.96 16 17 H 0.04 0.86 8.08 -51.93 -0.42 0.44 16 18 C -0.16 -3.08 9.49 37.16 0.35 -2.72 16 19 N -0.72 -18.93 4.53 -53.43 -0.24 -19.17 16 20 C -0.24 -6.77 9.93 -15.06 -0.15 -6.92 16 21 H 0.06 1.79 7.83 -52.49 -0.41 1.38 16 22 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 23 N -0.92 -28.62 13.06 55.49 0.72 -27.90 16 24 Si 0.90 22.95 29.55 -169.99 -5.02 17.92 16 25 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 27 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 28 C -0.15 -2.02 9.64 -39.43 -0.38 -2.40 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 33 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 34 H 0.12 1.11 6.30 -52.49 -0.33 0.78 16 35 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 37 H 0.08 1.25 8.04 -51.93 -0.42 0.83 16 38 H 0.10 1.87 8.04 -51.93 -0.42 1.45 16 39 H 0.09 1.42 8.11 -51.93 -0.42 1.00 16 40 H 0.08 1.03 7.40 -51.93 -0.38 0.65 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.64 7.89 -51.93 -0.41 0.24 16 43 H 0.06 0.67 6.44 -51.93 -0.33 0.34 16 44 H 0.08 1.47 7.42 -51.93 -0.39 1.09 16 45 H 0.07 0.92 7.89 -51.93 -0.41 0.51 16 46 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 49 H 0.40 11.40 5.04 -40.82 -0.21 11.20 16 50 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 51 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 LS Contribution 413.36 15.07 6.23 6.23 Total: -1.00 -35.01 413.36 -9.21 -44.22 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -8.70 Total: 11.18 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -1.57 Total: -5.67 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: -0.02 Total: -57.90 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.12 Total: -15.98 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -35.01 -9.21 -44.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676488620.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.685 kcal (2) G-P(sol) polarization free energy of solvation -35.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds