Wall clock time and date at job start Tue Mar 31 2020 19:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.35904 * 116.99628 * 180.02562 * 3 2 1 5 5 C 1.38758 * 120.05922 * 359.72826 * 4 3 2 6 6 C 1.38121 * 119.94303 * 179.69478 * 5 4 3 7 7 C 1.38284 * 120.05670 * 0.60266 * 6 5 4 8 8 C 1.38245 * 120.11162 * 359.67148 * 7 6 5 9 9 C 1.50704 * 119.97222 * 179.97438 * 8 7 6 10 10 C 1.52989 * 109.47377 * 270.02397 * 9 8 7 11 11 C 1.50700 * 109.47162 * 179.97438 * 10 9 8 12 12 O 1.21280 * 120.00162 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00067 * 180.02562 * 11 10 9 14 14 C 1.46503 * 119.99909 * 0.02562 * 13 11 10 15 15 C 1.46505 * 120.00103 * 180.02562 * 13 11 10 16 16 C 1.52997 * 109.46904 * 89.99703 * 15 13 11 17 17 H 1.08997 * 109.47527 * 65.00794 * 16 15 13 18 18 C 1.53003 * 109.46884 * 185.00096 * 16 15 13 19 19 N 1.46505 * 109.47515 * 304.99752 * 16 15 13 20 20 C 1.36938 * 119.99764 * 155.00407 * 19 16 15 21 21 H 1.07995 * 119.99864 * 359.97438 * 20 19 16 22 22 C 1.38814 * 119.99472 * 180.02562 * 20 19 16 23 23 N 1.31610 * 120.00392 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99595 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47122 * 59.99492 * 24 22 20 26 26 H 1.48496 * 109.46939 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47221 * 299.99502 * 24 22 20 28 28 C 1.38173 * 120.05607 * 0.02881 * 8 7 6 29 29 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 31 31 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 33 33 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 34 34 H 1.08003 * 120.02200 * 359.97438 * 5 4 3 35 35 H 1.07998 * 119.96674 * 180.29445 * 6 5 4 36 36 H 1.08003 * 119.94493 * 179.69558 * 7 6 5 37 37 H 1.09002 * 109.46581 * 30.02752 * 9 8 7 38 38 H 1.08999 * 109.46711 * 150.02339 * 9 8 7 39 39 H 1.08995 * 109.47307 * 300.00059 * 10 9 8 40 40 H 1.08999 * 109.47248 * 60.00271 * 10 9 8 41 41 H 1.09000 * 109.46825 * 90.00350 * 14 13 11 42 42 H 1.09005 * 109.46905 * 210.00223 * 14 13 11 43 43 H 1.09001 * 109.47046 * 330.00076 * 14 13 11 44 44 H 1.08993 * 109.47152 * 209.99965 * 15 13 11 45 45 H 1.09001 * 109.46382 * 329.99959 * 15 13 11 46 46 H 1.08994 * 109.47169 * 179.97438 * 18 16 15 47 47 H 1.09001 * 109.47473 * 300.00272 * 18 16 15 48 48 H 1.09007 * 109.46954 * 60.00220 * 18 16 15 49 49 H 0.97000 * 119.99784 * 335.00414 * 19 16 15 50 50 H 0.97006 * 120.00526 * 180.02562 * 23 22 20 51 51 H 1.07998 * 120.02728 * 180.02562 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.2000 0.4259 0.0046 6 6 5.5689 0.6096 -0.0023 7 6 6.0962 1.8880 -0.0018 8 6 5.2551 2.9851 -0.0012 9 6 5.8331 4.3769 -0.0001 10 6 6.0289 4.8467 1.4426 11 6 6.6075 6.2382 1.4437 12 8 6.8398 6.7991 0.3938 13 7 6.8667 6.8593 2.6114 14 6 6.5866 6.1815 3.8796 15 6 7.4287 8.2123 2.6124 16 6 6.2921 9.2366 2.6142 17 1 5.7321 9.1564 3.5458 18 6 6.8752 10.6456 2.4895 19 7 5.3983 8.9762 1.4830 20 6 4.0909 9.3801 1.5364 21 1 3.7187 9.8901 2.4125 22 6 3.2439 9.1329 0.4647 23 7 3.6974 8.5109 -0.6028 24 14 1.4602 9.6831 0.5379 25 1 1.4036 11.1573 0.7075 26 1 0.7731 9.3036 -0.7226 27 1 0.7863 9.0264 1.6867 28 6 3.8849 2.8067 -0.0005 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 3.7886 -0.5727 0.0095 35 1 6.2280 -0.2459 -0.0031 36 1 7.1669 2.0295 -0.0023 37 1 6.7942 4.3715 -0.5142 38 1 5.1504 5.0542 -0.5133 39 1 5.0678 4.8520 1.9567 40 1 6.7116 4.1694 1.9558 41 1 7.4662 5.6193 4.1931 42 1 6.3384 6.9219 4.6402 43 1 5.7466 5.4992 3.7491 44 1 8.0431 8.3498 3.5021 45 1 8.0420 8.3516 1.7222 46 1 6.0656 11.3753 2.4903 47 1 7.5403 10.8394 3.3311 48 1 7.4353 10.7259 1.5578 49 1 5.7326 8.5178 0.6962 50 1 3.1056 8.3384 -1.3518 51 1 3.2283 3.6641 -0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676488621.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:49 Heat of formation + Delta-G solvation = -44.427343 kcal Electronic energy + Delta-G solvation = -29275.804397 eV Core-core repulsion = 25368.683154 eV Total energy + Delta-G solvation = -3907.121243 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.20751 -39.39385 -37.79495 -35.93822 -34.26080 -33.51526 -32.13828 -31.85890 -29.94705 -29.27484 -28.50550 -26.93223 -25.82537 -24.29912 -23.53265 -22.97125 -22.47263 -20.61930 -19.82925 -18.55201 -17.89048 -17.15857 -16.28029 -16.22064 -16.09966 -15.99299 -15.59654 -15.27465 -14.61656 -14.21387 -13.75370 -13.62367 -13.56116 -13.32650 -13.26546 -13.01302 -12.82817 -12.72796 -12.32063 -12.17791 -12.15512 -12.02311 -11.85140 -11.73329 -11.56287 -11.38579 -11.29792 -11.12819 -10.82149 -10.77292 -10.72429 -10.59760 -10.53632 -10.28254 -9.97422 -9.47448 -9.11926 -8.76581 -8.69903 -8.16554 -7.98458 -6.73892 -5.54977 -2.84353 1.35045 1.48871 3.11121 3.32861 3.51300 3.55932 3.57499 3.59337 3.82437 4.67527 4.69170 4.71918 4.77703 4.91262 4.95378 5.05812 5.17790 5.28821 5.35218 5.36433 5.43609 5.47323 5.55578 5.57382 5.59000 5.60517 5.70754 5.73763 5.81316 5.82808 5.89367 5.93958 6.07568 6.09771 6.17719 6.27640 6.34108 6.35477 6.44146 6.47184 6.57962 6.74159 6.75548 6.88430 6.90407 7.04942 7.23718 7.42642 7.83088 7.97478 8.61532 8.90918 9.74134 10.37773 10.77137 11.65056 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009820 B = 0.003407 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2850.561907 B = 8217.505148 C =10243.653204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.056 3.944 3 O -0.315 6.315 4 C 0.130 3.870 5 C -0.219 4.219 6 C -0.083 4.083 7 C -0.156 4.156 8 C -0.032 4.032 9 C -0.069 4.069 10 C -0.125 4.125 11 C 0.522 3.478 12 O -0.516 6.516 13 N -0.612 5.612 14 C 0.085 3.915 15 C 0.110 3.890 16 C 0.154 3.846 17 H 0.041 0.959 18 C -0.164 4.164 19 N -0.721 5.721 20 C -0.240 4.240 21 H 0.063 0.937 22 C -0.010 4.010 23 N -0.919 5.919 24 Si 0.897 3.103 25 H -0.289 1.289 26 H -0.292 1.292 27 H -0.289 1.289 28 C -0.144 4.144 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.047 0.953 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.078 0.922 46 H 0.054 0.946 47 H 0.034 0.966 48 H 0.047 0.953 49 H 0.399 0.601 50 H 0.252 0.748 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.108 -18.780 6.457 20.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.229 6.229 4 C 0.085 3.915 5 C -0.238 4.238 6 C -0.101 4.101 7 C -0.174 4.174 8 C -0.032 4.032 9 C -0.107 4.107 10 C -0.165 4.165 11 C 0.310 3.690 12 O -0.391 6.391 13 N -0.346 5.346 14 C -0.059 4.059 15 C -0.013 4.013 16 C 0.042 3.958 17 H 0.059 0.941 18 C -0.225 4.225 19 N -0.367 5.367 20 C -0.371 4.371 21 H 0.081 0.919 22 C -0.207 4.207 23 N -0.566 5.566 24 Si 0.729 3.271 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.216 1.216 28 C -0.163 4.163 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.098 0.902 38 H 0.114 0.886 39 H 0.110 0.890 40 H 0.101 0.899 41 H 0.065 0.935 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.096 0.904 46 H 0.073 0.927 47 H 0.053 0.947 48 H 0.066 0.934 49 H 0.238 0.762 50 H 0.062 0.938 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.908 -18.312 5.889 19.629 hybrid contribution -1.050 -0.022 -0.023 1.051 sum 2.858 -18.334 5.866 19.461 Atomic orbital electron populations 1.21779 0.92837 1.02644 1.03764 1.22741 0.95848 0.82263 1.01121 1.86114 1.19252 1.28913 1.88668 1.18987 0.82093 0.94113 0.96345 1.21146 0.94473 0.97652 1.10511 1.20856 0.94182 0.97110 0.97926 1.20982 0.99751 0.91940 1.04759 1.19816 0.92199 0.95800 0.95378 1.20405 1.02623 0.91551 0.96076 1.21543 1.02331 0.94089 0.98490 1.20346 0.77724 0.87603 0.83376 1.90692 1.51045 1.66690 1.30650 1.47597 1.64899 1.16251 1.05822 1.21666 1.00217 0.97721 0.86314 1.21802 0.96165 0.81516 1.01826 1.20633 0.90745 0.91443 0.92934 0.94079 1.22419 1.00217 1.00200 0.99617 1.42711 1.07275 1.69711 1.16966 1.19138 0.86812 1.30731 1.00443 0.91937 1.24699 0.97586 1.01650 0.96769 1.69722 1.34480 1.46261 1.06177 0.86433 0.86001 0.78194 0.76514 1.21551 1.21801 1.21589 1.20494 0.95051 0.95055 1.05698 0.90535 0.91429 0.91420 0.92227 0.92229 0.85995 0.86114 0.85956 0.90232 0.88639 0.88985 0.89934 0.93465 0.91426 0.91360 0.91373 0.90381 0.92728 0.94707 0.93405 0.76220 0.93781 0.84735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.28 37.16 0.38 -0.80 16 2 C 0.06 0.52 5.46 37.16 0.20 0.72 16 3 O -0.32 -4.28 10.14 -19.44 -0.20 -4.48 16 4 C 0.13 1.80 6.69 -39.22 -0.26 1.54 16 5 C -0.22 -2.54 9.04 -39.43 -0.36 -2.89 16 6 C -0.08 -0.91 10.04 -39.61 -0.40 -1.30 16 7 C -0.16 -1.90 9.70 -39.56 -0.38 -2.28 16 8 C -0.03 -0.46 5.13 -104.64 -0.54 -0.99 16 9 C -0.07 -1.11 4.63 -27.89 -0.13 -1.24 16 10 C -0.12 -1.92 4.23 -27.89 -0.12 -2.04 16 11 C 0.52 9.99 6.97 -10.98 -0.08 9.91 16 12 O -0.52 -12.13 13.30 5.56 0.07 -12.05 16 13 N -0.61 -10.35 2.77 -181.57 -0.50 -10.86 16 14 C 0.08 1.05 10.24 59.85 0.61 1.67 16 15 C 0.11 1.92 5.14 -4.04 -0.02 1.90 16 16 C 0.15 3.19 3.20 -67.93 -0.22 2.97 16 17 H 0.04 0.85 8.08 -51.93 -0.42 0.43 16 18 C -0.16 -3.09 9.49 37.16 0.35 -2.73 16 19 N -0.72 -19.02 4.52 -53.42 -0.24 -19.26 16 20 C -0.24 -6.91 9.93 -15.06 -0.15 -7.06 16 21 H 0.06 1.76 7.83 -52.49 -0.41 1.34 16 22 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 23 N -0.92 -28.85 13.06 55.49 0.72 -28.12 16 24 Si 0.90 23.19 29.55 -169.99 -5.02 18.17 16 25 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 26 H -0.29 -7.63 7.11 56.52 0.40 -7.22 16 27 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 28 C -0.14 -2.21 9.64 -39.43 -0.38 -2.59 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.48 7.65 -51.93 -0.40 0.08 16 33 H 0.06 0.49 7.67 -51.93 -0.40 0.09 16 34 H 0.12 1.11 6.30 -52.48 -0.33 0.78 16 35 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 37 H 0.08 1.24 8.04 -51.93 -0.42 0.83 16 38 H 0.10 1.89 8.04 -51.93 -0.42 1.47 16 39 H 0.09 1.44 7.40 -51.93 -0.38 1.06 16 40 H 0.08 1.01 8.11 -51.93 -0.42 0.59 16 41 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.79 8.07 -51.93 -0.42 0.37 16 43 H 0.07 0.82 6.44 -51.93 -0.33 0.48 16 44 H 0.07 0.93 8.07 -51.93 -0.42 0.51 16 45 H 0.08 1.48 7.42 -51.93 -0.39 1.09 16 46 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 47 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.05 0.93 8.14 -51.92 -0.42 0.50 16 49 H 0.40 11.45 5.02 -40.82 -0.20 11.25 16 50 H 0.25 7.73 8.31 -40.82 -0.34 7.39 16 51 H 0.13 2.23 8.06 -52.49 -0.42 1.81 16 LS Contribution 413.61 15.07 6.23 6.23 Total: -1.00 -35.31 413.61 -9.23 -44.54 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: -8.72 Total: 11.47 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -1.57 Total: -5.64 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: -0.02 Total: -58.24 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.12 Total: -16.54 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.02 Total: 18.17 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -35.31 -9.23 -44.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676488621.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.117 kcal (2) G-P(sol) polarization free energy of solvation -35.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds