Wall clock time and date at job start Tue Mar 31 2020 19:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.35904 * 116.99628 * 180.02562 * 3 2 1 5 5 C 1.38758 * 120.05922 * 359.72826 * 4 3 2 6 6 C 1.38121 * 119.94303 * 179.69478 * 5 4 3 7 7 C 1.38284 * 120.05670 * 0.60266 * 6 5 4 8 8 C 1.38245 * 120.11162 * 359.67148 * 7 6 5 9 9 C 1.50704 * 119.97222 * 179.97438 * 8 7 6 10 10 C 1.52989 * 109.47377 * 270.02397 * 9 8 7 11 11 C 1.50700 * 109.47162 * 179.97438 * 10 9 8 12 12 O 1.21280 * 120.00162 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00067 * 180.02562 * 11 10 9 14 14 C 1.46503 * 119.99909 * 0.02562 * 13 11 10 15 15 C 1.46505 * 120.00103 * 180.02562 * 13 11 10 16 16 C 1.52997 * 109.46904 * 89.99703 * 15 13 11 17 17 H 1.08997 * 109.47527 * 65.00794 * 16 15 13 18 18 C 1.53003 * 109.46884 * 185.00096 * 16 15 13 19 19 N 1.46505 * 109.47515 * 304.99752 * 16 15 13 20 20 C 1.36938 * 119.99764 * 155.00407 * 19 16 15 21 21 H 1.07995 * 119.99864 * 359.97438 * 20 19 16 22 22 C 1.38814 * 119.99472 * 180.02562 * 20 19 16 23 23 N 1.31610 * 120.00392 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99595 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47122 * 59.99492 * 24 22 20 26 26 H 1.48496 * 109.46939 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47221 * 299.99502 * 24 22 20 28 28 C 1.38173 * 120.05607 * 0.02881 * 8 7 6 29 29 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 31 31 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 33 33 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 34 34 H 1.08003 * 120.02200 * 359.97438 * 5 4 3 35 35 H 1.07998 * 119.96674 * 180.29445 * 6 5 4 36 36 H 1.08003 * 119.94493 * 179.69558 * 7 6 5 37 37 H 1.09002 * 109.46581 * 30.02752 * 9 8 7 38 38 H 1.08999 * 109.46711 * 150.02339 * 9 8 7 39 39 H 1.08995 * 109.47307 * 300.00059 * 10 9 8 40 40 H 1.08999 * 109.47248 * 60.00271 * 10 9 8 41 41 H 1.09000 * 109.46825 * 90.00350 * 14 13 11 42 42 H 1.09005 * 109.46905 * 210.00223 * 14 13 11 43 43 H 1.09001 * 109.47046 * 330.00076 * 14 13 11 44 44 H 1.08993 * 109.47152 * 209.99965 * 15 13 11 45 45 H 1.09001 * 109.46382 * 329.99959 * 15 13 11 46 46 H 1.08994 * 109.47169 * 179.97438 * 18 16 15 47 47 H 1.09001 * 109.47473 * 300.00272 * 18 16 15 48 48 H 1.09007 * 109.46954 * 60.00220 * 18 16 15 49 49 H 0.97000 * 119.99784 * 335.00414 * 19 16 15 50 50 H 0.97006 * 120.00526 * 180.02562 * 23 22 20 51 51 H 1.07998 * 120.02728 * 180.02562 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.2000 0.4259 0.0046 6 6 5.5689 0.6096 -0.0023 7 6 6.0962 1.8880 -0.0018 8 6 5.2551 2.9851 -0.0012 9 6 5.8331 4.3769 -0.0001 10 6 6.0289 4.8467 1.4426 11 6 6.6075 6.2382 1.4437 12 8 6.8398 6.7991 0.3938 13 7 6.8667 6.8593 2.6114 14 6 6.5866 6.1815 3.8796 15 6 7.4287 8.2123 2.6124 16 6 6.2921 9.2366 2.6142 17 1 5.7321 9.1564 3.5458 18 6 6.8752 10.6456 2.4895 19 7 5.3983 8.9762 1.4830 20 6 4.0909 9.3801 1.5364 21 1 3.7187 9.8901 2.4125 22 6 3.2439 9.1329 0.4647 23 7 3.6974 8.5109 -0.6028 24 14 1.4602 9.6831 0.5379 25 1 1.4036 11.1573 0.7075 26 1 0.7731 9.3036 -0.7226 27 1 0.7863 9.0264 1.6867 28 6 3.8849 2.8067 -0.0005 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 3.7886 -0.5727 0.0095 35 1 6.2280 -0.2459 -0.0031 36 1 7.1669 2.0295 -0.0023 37 1 6.7942 4.3715 -0.5142 38 1 5.1504 5.0542 -0.5133 39 1 5.0678 4.8520 1.9567 40 1 6.7116 4.1694 1.9558 41 1 7.4662 5.6193 4.1931 42 1 6.3384 6.9219 4.6402 43 1 5.7466 5.4992 3.7491 44 1 8.0431 8.3498 3.5021 45 1 8.0420 8.3516 1.7222 46 1 6.0656 11.3753 2.4903 47 1 7.5403 10.8394 3.3311 48 1 7.4353 10.7259 1.5578 49 1 5.7326 8.5178 0.6962 50 1 3.1056 8.3384 -1.3518 51 1 3.2283 3.6641 -0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676488621.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:48 Heat of formation + Delta-G solvation = -66.137701 kcal Electronic energy + Delta-G solvation = -29276.745829 eV Core-core repulsion = 25368.683154 eV Total energy + Delta-G solvation = -3908.062675 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -41.22838 -40.77947 -38.80107 -37.57391 -35.89745 -34.75120 -33.81719 -32.89045 -31.09190 -30.55014 -30.16405 -28.17787 -27.07819 -25.78680 -25.19585 -24.03066 -23.45534 -21.73611 -21.36770 -19.98069 -19.24533 -18.84081 -17.68192 -17.16517 -17.09941 -17.02102 -16.98590 -16.66342 -16.42510 -15.58609 -15.38129 -14.93257 -14.83241 -14.43064 -14.30445 -14.24042 -14.06132 -13.73843 -13.59179 -13.46166 -13.44330 -13.33838 -13.19495 -12.98035 -12.82300 -12.73037 -12.57238 -12.52191 -12.41935 -12.37916 -12.17194 -11.96015 -11.81294 -11.65329 -11.60841 -11.54706 -10.93226 -10.60422 -9.77259 -9.38864 -9.14113 -8.88098 -7.82777 -5.11649 0.34381 0.50043 1.41420 1.44747 1.50986 1.87674 2.24939 2.32506 2.57727 2.80755 3.45953 3.62314 3.86767 3.94892 4.01288 4.04607 4.07857 4.13399 4.19462 4.22598 4.29607 4.36456 4.37151 4.45893 4.48744 4.55464 4.58022 4.64020 4.67215 4.75752 4.80117 4.85619 4.91301 4.95331 4.97195 5.04185 5.09657 5.10196 5.17976 5.24066 5.29334 5.37307 5.48676 5.49636 5.55615 5.71330 5.82342 5.88695 6.35093 6.50625 6.62013 7.40544 7.50238 8.29916 8.53663 9.37838 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009820 B = 0.003407 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2850.561907 B = 8217.505148 C =10243.653204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.045 3.955 3 O -0.344 6.344 4 C 0.119 3.881 5 C -0.212 4.212 6 C -0.071 4.071 7 C -0.155 4.155 8 C -0.040 4.040 9 C -0.058 4.058 10 C -0.113 4.113 11 C 0.508 3.492 12 O -0.571 6.571 13 N -0.612 5.612 14 C 0.077 3.923 15 C 0.115 3.885 16 C 0.143 3.857 17 H 0.046 0.954 18 C -0.154 4.154 19 N -0.737 5.737 20 C -0.236 4.236 21 H 0.069 0.931 22 C -0.075 4.075 23 N -0.957 5.957 24 Si 0.962 3.038 25 H -0.279 1.279 26 H -0.300 1.300 27 H -0.279 1.279 28 C -0.177 4.177 29 H 0.106 0.894 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.153 0.847 35 H 0.161 0.839 36 H 0.145 0.855 37 H 0.080 0.920 38 H 0.040 0.960 39 H 0.085 0.915 40 H 0.125 0.875 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.118 0.882 45 H 0.056 0.944 46 H 0.033 0.967 47 H 0.081 0.919 48 H 0.033 0.967 49 H 0.385 0.615 50 H 0.243 0.757 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.318 -21.386 9.161 23.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 O -0.259 6.259 4 C 0.074 3.926 5 C -0.230 4.230 6 C -0.089 4.089 7 C -0.173 4.173 8 C -0.041 4.041 9 C -0.096 4.096 10 C -0.152 4.152 11 C 0.297 3.703 12 O -0.450 6.450 13 N -0.345 5.345 14 C -0.065 4.065 15 C -0.008 4.008 16 C 0.034 3.966 17 H 0.064 0.936 18 C -0.214 4.214 19 N -0.382 5.382 20 C -0.369 4.369 21 H 0.087 0.913 22 C -0.268 4.268 23 N -0.608 5.608 24 Si 0.792 3.208 25 H -0.206 1.206 26 H -0.227 1.227 27 H -0.205 1.205 28 C -0.196 4.196 29 H 0.124 0.876 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.171 0.829 35 H 0.179 0.821 36 H 0.163 0.837 37 H 0.099 0.901 38 H 0.059 0.941 39 H 0.103 0.897 40 H 0.143 0.857 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.136 0.864 45 H 0.075 0.925 46 H 0.052 0.948 47 H 0.099 0.901 48 H 0.053 0.947 49 H 0.222 0.778 50 H 0.052 0.948 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.129 -20.906 8.696 23.216 hybrid contribution -1.388 0.766 -0.776 1.765 sum 3.741 -20.140 7.920 21.962 Atomic orbital electron populations 1.21830 0.92002 1.04256 1.02813 1.23085 0.96620 0.80597 1.02574 1.86090 1.19303 1.31764 1.88724 1.19083 0.82773 0.94121 0.96652 1.21502 0.94603 0.98086 1.08846 1.21310 0.94393 0.97665 0.95526 1.21216 1.00505 0.91641 1.03927 1.19629 0.92039 0.95401 0.96991 1.20184 1.01242 0.91974 0.96228 1.21505 1.02571 0.92928 0.98233 1.21021 0.77144 0.88762 0.83323 1.90663 1.53485 1.68100 1.32789 1.47765 1.63821 1.16074 1.06816 1.21982 1.02100 0.98172 0.84265 1.21760 0.94979 0.80929 1.03141 1.20986 0.91187 0.93540 0.90930 0.93639 1.22256 1.00068 0.98149 1.00934 1.42974 1.07362 1.69602 1.18262 1.19531 0.88084 1.29144 1.00112 0.91306 1.25481 1.01737 1.02801 0.96782 1.69932 1.35535 1.48437 1.06891 0.85384 0.81201 0.78044 0.76193 1.20564 1.22705 1.20511 1.20379 0.95395 0.95162 1.08623 0.87573 0.92286 0.92489 0.90491 0.90802 0.82942 0.82122 0.83735 0.90108 0.94079 0.89671 0.85747 0.89712 0.90309 0.91235 0.86384 0.92526 0.94762 0.90066 0.94741 0.77800 0.94807 0.88261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 10.28 71.98 0.74 -1.46 16 2 C 0.05 0.78 5.46 71.98 0.39 1.17 16 3 O -0.34 -9.55 10.14 -92.47 -0.94 -10.49 16 4 C 0.12 3.33 6.69 22.51 0.15 3.48 16 5 C -0.21 -4.36 9.04 22.37 0.20 -4.16 16 6 C -0.07 -1.31 10.04 22.25 0.22 -1.08 16 7 C -0.15 -3.47 9.70 22.28 0.22 -3.25 16 8 C -0.04 -1.20 5.13 -19.88 -0.10 -1.30 16 9 C -0.06 -2.03 4.63 29.85 0.14 -1.89 16 10 C -0.11 -3.57 4.23 29.84 0.13 -3.44 16 11 C 0.51 20.03 6.97 87.66 0.61 20.64 16 12 O -0.57 -28.61 13.30 -3.03 -0.04 -28.65 16 13 N -0.61 -20.13 2.77 -846.74 -2.35 -22.48 16 14 C 0.08 1.69 10.24 127.77 1.31 3.00 16 15 C 0.12 3.85 5.14 86.38 0.44 4.30 16 16 C 0.14 5.84 3.20 44.99 0.14 5.98 16 17 H 0.05 1.81 8.08 -2.39 -0.02 1.80 16 18 C -0.15 -5.63 9.49 71.98 0.68 -4.95 16 19 N -0.74 -40.09 4.52 -322.94 -1.46 -41.55 16 20 C -0.24 -13.96 9.93 84.03 0.83 -13.13 16 21 H 0.07 3.89 7.83 -2.91 -0.02 3.86 16 22 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 23 N -0.96 -63.67 13.06 21.65 0.28 -63.39 16 24 Si 0.96 49.39 29.55 68.60 2.03 51.42 16 25 H -0.28 -13.77 7.11 99.48 0.71 -13.07 16 26 H -0.30 -15.70 7.11 99.48 0.71 -14.99 16 27 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 28 C -0.18 -5.85 9.64 22.37 0.22 -5.63 16 29 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.08 1.04 7.65 -2.39 -0.02 1.02 16 33 H 0.07 1.04 7.67 -2.39 -0.02 1.02 16 34 H 0.15 2.15 6.30 -2.91 -0.02 2.13 16 35 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 36 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 37 H 0.08 2.70 8.04 -2.39 -0.02 2.68 16 38 H 0.04 1.84 8.04 -2.39 -0.02 1.82 16 39 H 0.08 2.81 7.40 -2.39 -0.02 2.79 16 40 H 0.12 2.83 8.11 -2.39 -0.02 2.81 16 41 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.08 1.58 8.07 -2.38 -0.02 1.56 16 43 H 0.07 1.53 6.44 -2.39 -0.02 1.52 16 44 H 0.12 2.75 8.07 -2.39 -0.02 2.73 16 45 H 0.06 2.15 7.42 -2.39 -0.02 2.14 16 46 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 48 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 49 H 0.39 23.28 5.02 -92.71 -0.47 22.82 16 50 H 0.24 15.90 8.31 -92.70 -0.77 15.13 16 51 H 0.10 3.84 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -84.12 413.61 4.75 -79.37 By element: Atomic # 1 Polarization: 41.23 SS G_CDS: 0.43 Total: 41.66 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: 6.80 Total: -5.89 kcal Atomic # 7 Polarization: -123.89 SS G_CDS: -3.53 Total: -127.42 kcal Atomic # 8 Polarization: -38.17 SS G_CDS: -0.98 Total: -39.14 kcal Atomic # 14 Polarization: 49.39 SS G_CDS: 2.03 Total: 51.42 kcal Total: -84.12 4.75 -79.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676488621.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.231 kcal (2) G-P(sol) polarization free energy of solvation -84.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds