Wall clock time and date at job start Tue Mar 31 2020 18:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47135 * 2 1 4 4 C 1.36931 * 120.00290 * 275.30980 * 3 2 1 5 5 H 1.07995 * 120.00489 * 37.57276 * 4 3 2 6 6 C 1.38817 * 120.00055 * 217.57558 * 4 3 2 7 7 N 1.31625 * 119.99905 * 21.43262 * 6 4 3 8 8 Si 1.86800 * 120.00019 * 201.43172 * 6 4 3 9 9 H 1.48494 * 109.46997 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.46871 * 120.00090 * 8 6 4 11 11 H 1.48500 * 109.47021 * 240.00114 * 8 6 4 12 12 C 1.46502 * 119.99629 * 95.30874 * 3 2 1 13 13 C 1.53004 * 109.47073 * 269.99956 * 12 3 2 14 14 C 1.53005 * 109.46874 * 180.02562 * 13 12 3 15 15 N 1.46503 * 109.46716 * 179.97438 * 14 13 12 16 16 C 1.34776 * 119.99809 * 180.02562 * 15 14 13 17 17 O 1.21280 * 119.99990 * 359.97438 * 16 15 14 18 18 C 1.50705 * 120.00071 * 180.27805 * 16 15 14 19 19 C 1.50694 * 109.46974 * 179.72378 * 18 16 15 20 20 C 1.38292 * 119.97090 * 90.00559 * 19 18 16 21 21 C 1.38244 * 120.10804 * 179.97438 * 20 19 18 22 22 C 1.38162 * 120.05894 * 359.97438 * 21 20 19 23 23 C 1.50700 * 120.02785 * 180.02562 * 22 21 20 24 24 C 1.38710 * 119.94360 * 0.02562 * 22 21 20 25 25 O 1.35901 * 120.05404 * 180.02562 * 24 22 21 26 26 C 1.42905 * 116.99792 * 179.97438 * 25 24 22 27 27 C 1.38123 * 119.97293 * 269.71989 * 19 18 16 28 28 H 1.08997 * 109.46957 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47467 * 300.00204 * 1 2 3 30 30 H 1.09002 * 109.46651 * 60.00173 * 1 2 3 31 31 H 1.09005 * 109.47584 * 239.99880 * 2 1 3 32 32 H 1.08999 * 109.47010 * 120.00188 * 2 1 3 33 33 H 0.96995 * 119.99492 * 179.97438 * 7 6 4 34 34 H 1.09008 * 109.47034 * 150.00090 * 12 3 2 35 35 H 1.08996 * 109.47461 * 30.00030 * 12 3 2 36 36 H 1.08995 * 109.47247 * 60.00357 * 13 12 3 37 37 H 1.09004 * 109.47039 * 300.00027 * 13 12 3 38 38 H 1.09002 * 109.46938 * 60.00469 * 14 13 12 39 39 H 1.08996 * 109.47475 * 299.99961 * 14 13 12 40 40 H 0.97003 * 120.00114 * 0.02562 * 15 14 13 41 41 H 1.09003 * 109.46577 * 299.72585 * 18 16 15 42 42 H 1.08997 * 109.46838 * 59.72089 * 18 16 15 43 43 H 1.07998 * 119.94517 * 359.96812 * 20 19 18 44 44 H 1.08007 * 119.97042 * 180.02562 * 21 20 19 45 45 H 1.08998 * 109.47306 * 89.99917 * 23 22 21 46 46 H 1.09006 * 109.47005 * 209.99771 * 23 22 21 47 47 H 1.08995 * 109.47305 * 329.99947 * 23 22 21 48 48 H 1.09001 * 109.47041 * 59.99335 * 26 25 24 49 49 H 1.08997 * 109.47320 * 179.97438 * 26 25 24 50 50 H 1.09001 * 109.47222 * 299.99819 * 26 25 24 51 51 H 1.07999 * 120.02752 * 0.02562 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0633 -1.1807 5 1 1.4106 1.9279 -1.9627 6 6 3.2112 2.9290 -1.3727 7 7 4.3027 2.7981 -0.6489 8 14 3.0993 4.2798 -2.6582 9 1 1.7776 4.2136 -3.3319 10 1 3.2550 5.6024 -2.0012 11 1 4.1766 4.0966 -3.6637 12 6 2.3731 2.0326 1.2634 13 6 1.1424 2.7382 1.8366 14 6 1.5132 3.4190 3.1557 15 7 0.3350 4.0951 3.7043 16 6 0.4250 4.7670 4.8691 17 8 1.4812 4.8115 5.4635 18 6 -0.7886 5.4572 5.4366 19 6 -0.4246 6.1237 6.7382 20 6 0.0332 7.4287 6.7419 21 6 0.3675 8.0430 7.9343 22 6 0.2443 7.3545 9.1258 23 6 0.6083 8.0251 10.4254 24 6 -0.2146 6.0456 9.1249 25 8 -0.3371 5.3664 10.2956 26 6 -0.8165 4.0223 10.2188 27 6 -0.5541 5.4327 7.9272 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 5.0491 3.4027 -0.7834 34 1 3.1617 2.7641 1.0861 35 1 2.7254 1.2833 1.9722 36 1 0.3540 2.0068 2.0139 37 1 0.7902 3.4876 1.1278 38 1 2.3015 4.1506 2.9780 39 1 1.8657 2.6700 3.8647 40 1 -0.5100 4.0592 3.2291 41 1 -1.1428 6.2082 4.7304 42 1 -1.5752 4.7234 5.6117 43 1 0.1299 7.9686 5.8116 44 1 0.7244 9.0624 7.9346 45 1 -0.2695 8.5253 10.8345 46 1 0.9630 7.2763 11.1338 47 1 1.3947 8.7587 10.2480 48 1 -0.1381 3.4292 9.6056 49 1 -0.8662 3.5965 11.2210 50 1 -1.8103 4.0160 9.7713 51 1 -0.9156 4.4151 7.9242 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689942556.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:30 Heat of formation + Delta-G solvation = -47.387704 kcal Electronic energy + Delta-G solvation = -28178.650844 eV Core-core repulsion = 24271.401230 eV Total energy + Delta-G solvation = -3907.249614 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.57867 -39.45452 -37.64399 -36.43837 -34.76877 -33.89319 -31.87242 -31.43039 -30.32331 -29.78229 -28.44715 -27.79595 -25.88666 -24.75543 -23.46530 -22.42391 -21.43381 -21.02753 -20.44238 -19.88396 -17.74321 -16.90000 -16.73617 -16.62542 -15.96609 -15.74616 -15.49873 -15.41669 -14.92958 -14.42209 -14.25632 -13.92715 -13.89866 -13.69434 -13.44288 -13.34568 -13.04772 -12.68248 -12.54730 -12.38233 -12.28295 -12.16079 -11.93378 -11.59461 -11.47074 -11.39529 -11.22882 -11.15359 -11.03321 -11.01810 -10.77629 -10.57912 -10.45657 -10.05773 -9.79430 -9.62501 -9.54344 -8.86313 -8.82340 -8.48418 -8.21641 -6.57289 -5.79257 -3.38567 1.13148 1.32106 2.75316 3.06854 3.27219 3.33936 3.42782 3.44612 3.71105 4.38784 4.46539 4.59642 4.76604 4.82809 4.90846 4.93624 4.97607 5.07389 5.21970 5.24856 5.25944 5.35982 5.39670 5.42939 5.48198 5.50286 5.65896 5.68464 5.84061 5.97625 6.01724 6.08157 6.13938 6.28462 6.31334 6.34750 6.42098 6.44235 6.48052 6.57848 6.62916 6.74288 6.78935 6.90112 7.08406 7.16691 7.20017 7.66364 7.67699 7.81996 8.36599 8.51834 9.19052 9.81410 10.40363 11.20154 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016382 B = 0.002106 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.767371 B =13294.454655 C =14317.313067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 N -0.585 5.585 4 C -0.260 4.260 5 H 0.059 0.941 6 C 0.012 3.988 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.289 1.289 12 C 0.151 3.849 13 C -0.146 4.146 14 C 0.121 3.879 15 N -0.727 5.727 16 C 0.508 3.492 17 O -0.534 6.534 18 C -0.105 4.105 19 C -0.028 4.028 20 C -0.137 4.137 21 C -0.082 4.082 22 C -0.120 4.120 23 C -0.103 4.103 24 C 0.125 3.875 25 O -0.316 6.316 26 C 0.027 3.973 27 C -0.189 4.189 28 H 0.034 0.966 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.043 0.957 32 H 0.033 0.967 33 H 0.254 0.746 34 H 0.095 0.905 35 H 0.024 0.976 36 H 0.050 0.950 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.398 0.602 41 H 0.104 0.896 42 H 0.100 0.900 43 H 0.123 0.877 44 H 0.128 0.872 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.064 0.936 48 H 0.056 0.944 49 H 0.099 0.901 50 H 0.054 0.946 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.405 6.351 19.461 24.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.013 3.987 3 N -0.305 5.305 4 C -0.389 4.389 5 H 0.077 0.923 6 C -0.188 4.188 7 N -0.528 5.528 8 Si 0.724 3.276 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.216 1.216 12 C 0.023 3.977 13 C -0.186 4.186 14 C -0.003 4.003 15 N -0.378 5.378 16 C 0.294 3.706 17 O -0.410 6.410 18 C -0.145 4.145 19 C -0.029 4.029 20 C -0.155 4.155 21 C -0.100 4.100 22 C -0.121 4.121 23 C -0.160 4.160 24 C 0.080 3.920 25 O -0.230 6.230 26 C -0.068 4.068 27 C -0.207 4.207 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.113 0.887 35 H 0.043 0.957 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.232 0.768 41 H 0.122 0.878 42 H 0.119 0.881 43 H 0.141 0.859 44 H 0.146 0.854 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.083 0.917 48 H 0.075 0.925 49 H 0.117 0.883 50 H 0.073 0.927 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.395 6.488 20.060 24.457 hybrid contribution -0.577 0.420 -1.188 1.386 sum -12.972 6.907 18.872 23.919 Atomic orbital electron populations 1.22366 1.00187 0.98867 1.01086 1.20848 0.91666 0.87429 0.98714 1.43750 1.76052 1.08179 1.02504 1.19010 1.04636 1.21140 0.94151 0.92299 1.25202 0.94234 1.01343 0.98070 1.70009 1.03200 1.37247 1.42354 0.86368 0.77656 0.82327 0.81273 1.20120 1.21411 1.21626 1.20798 0.94471 0.96650 0.85747 1.22529 1.02323 0.99842 0.93920 1.21471 0.87151 0.96077 0.95566 1.46195 1.14529 1.53781 1.23337 1.20443 0.90009 0.79122 0.81068 1.90735 1.30245 1.60538 1.59527 1.20718 0.97329 1.00905 0.95581 1.19027 0.97231 0.93704 0.92914 1.20887 1.01620 0.94831 0.98197 1.20817 0.98623 0.99505 0.91101 1.19232 1.04356 0.92010 0.96517 1.20585 1.01195 1.00137 0.94043 1.18730 0.96972 0.91649 0.84641 1.86036 1.81522 1.26853 1.28573 1.23053 0.98852 0.81098 1.03841 1.20996 1.07372 1.00580 0.91789 0.94649 0.93829 0.93270 0.93893 0.94864 0.93549 0.88748 0.95714 0.93100 0.91734 0.91580 0.92125 0.76797 0.87766 0.88126 0.85949 0.85387 0.91606 0.91298 0.91741 0.92520 0.88311 0.92742 0.85682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 10.21 37.16 0.38 -2.53 16 2 C 0.14 2.91 6.44 -4.04 -0.03 2.88 16 3 N -0.58 -14.11 2.43 -173.23 -0.42 -14.53 16 4 C -0.26 -6.91 9.45 -15.06 -0.14 -7.06 16 5 H 0.06 1.58 7.92 -52.49 -0.42 1.16 16 6 C 0.01 0.32 4.95 -17.43 -0.09 0.24 16 7 N -0.89 -25.25 11.47 55.49 0.64 -24.61 16 8 Si 0.89 21.24 29.60 -169.99 -5.03 16.20 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 12 C 0.15 3.39 5.33 -4.04 -0.02 3.36 16 13 C -0.15 -2.65 5.65 -26.73 -0.15 -2.80 16 14 C 0.12 2.01 5.67 -4.04 -0.02 1.99 16 15 N -0.73 -9.80 5.56 -60.29 -0.33 -10.14 16 16 C 0.51 7.19 7.82 -10.98 -0.09 7.10 16 17 O -0.53 -9.97 16.03 5.56 0.09 -9.88 16 18 C -0.11 -1.05 5.83 -29.04 -0.17 -1.22 16 19 C -0.03 -0.33 4.37 -104.65 -0.46 -0.79 16 20 C -0.14 -1.57 9.70 -39.56 -0.38 -1.95 16 21 C -0.08 -0.88 9.70 -39.61 -0.38 -1.27 16 22 C -0.12 -1.36 5.89 -104.48 -0.62 -1.97 16 23 C -0.10 -0.91 9.79 36.01 0.35 -0.56 16 24 C 0.13 1.49 6.66 -39.22 -0.26 1.23 16 25 O -0.32 -3.45 9.54 -19.43 -0.19 -3.63 16 26 C 0.03 0.20 9.81 101.05 0.99 1.19 16 27 C -0.19 -2.20 8.69 -39.43 -0.34 -2.54 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.04 0.74 6.64 -51.93 -0.34 0.39 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.04 0.92 8.08 -51.93 -0.42 0.50 16 32 H 0.03 0.65 7.83 -51.93 -0.41 0.24 16 33 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.09 2.45 5.52 -51.92 -0.29 2.16 16 35 H 0.02 0.53 7.86 -51.93 -0.41 0.13 16 36 H 0.05 0.86 6.64 -51.93 -0.34 0.52 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.40 4.23 8.47 -40.82 -0.35 3.89 16 41 H 0.10 0.81 8.09 -51.93 -0.42 0.39 16 42 H 0.10 0.76 8.08 -51.93 -0.42 0.34 16 43 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 44 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.07 0.64 7.53 -51.93 -0.39 0.25 16 47 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 48 H 0.06 0.44 7.67 -51.93 -0.40 0.04 16 49 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.05 0.34 7.65 -51.93 -0.40 -0.06 16 51 H 0.13 1.25 6.30 -52.49 -0.33 0.92 16 LS Contribution 415.73 15.07 6.27 6.27 Total: -1.00 -32.87 415.73 -9.10 -41.97 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -8.69 Total: 3.04 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -1.43 Total: -4.69 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: -0.12 Total: -49.28 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: -0.10 Total: -13.51 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -32.87 -9.10 -41.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689942556.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.418 kcal (2) G-P(sol) polarization free energy of solvation -32.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds