Wall clock time and date at job start Tue Mar 31 2020 18:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47135 * 2 1 4 4 C 1.36931 * 120.00290 * 275.30980 * 3 2 1 5 5 H 1.07995 * 120.00489 * 37.57276 * 4 3 2 6 6 C 1.38817 * 120.00055 * 217.57558 * 4 3 2 7 7 N 1.31625 * 119.99905 * 21.43262 * 6 4 3 8 8 Si 1.86800 * 120.00019 * 201.43172 * 6 4 3 9 9 H 1.48494 * 109.46997 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.46871 * 120.00090 * 8 6 4 11 11 H 1.48500 * 109.47021 * 240.00114 * 8 6 4 12 12 C 1.46502 * 119.99629 * 95.30874 * 3 2 1 13 13 C 1.53004 * 109.47073 * 269.99956 * 12 3 2 14 14 C 1.53005 * 109.46874 * 180.02562 * 13 12 3 15 15 N 1.46503 * 109.46716 * 179.97438 * 14 13 12 16 16 C 1.34776 * 119.99809 * 180.02562 * 15 14 13 17 17 O 1.21280 * 119.99990 * 359.97438 * 16 15 14 18 18 C 1.50705 * 120.00071 * 180.27805 * 16 15 14 19 19 C 1.50694 * 109.46974 * 179.72378 * 18 16 15 20 20 C 1.38292 * 119.97090 * 90.00559 * 19 18 16 21 21 C 1.38244 * 120.10804 * 179.97438 * 20 19 18 22 22 C 1.38162 * 120.05894 * 359.97438 * 21 20 19 23 23 C 1.50700 * 120.02785 * 180.02562 * 22 21 20 24 24 C 1.38710 * 119.94360 * 0.02562 * 22 21 20 25 25 O 1.35901 * 120.05404 * 180.02562 * 24 22 21 26 26 C 1.42905 * 116.99792 * 179.97438 * 25 24 22 27 27 C 1.38123 * 119.97293 * 269.71989 * 19 18 16 28 28 H 1.08997 * 109.46957 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47467 * 300.00204 * 1 2 3 30 30 H 1.09002 * 109.46651 * 60.00173 * 1 2 3 31 31 H 1.09005 * 109.47584 * 239.99880 * 2 1 3 32 32 H 1.08999 * 109.47010 * 120.00188 * 2 1 3 33 33 H 0.96995 * 119.99492 * 179.97438 * 7 6 4 34 34 H 1.09008 * 109.47034 * 150.00090 * 12 3 2 35 35 H 1.08996 * 109.47461 * 30.00030 * 12 3 2 36 36 H 1.08995 * 109.47247 * 60.00357 * 13 12 3 37 37 H 1.09004 * 109.47039 * 300.00027 * 13 12 3 38 38 H 1.09002 * 109.46938 * 60.00469 * 14 13 12 39 39 H 1.08996 * 109.47475 * 299.99961 * 14 13 12 40 40 H 0.97003 * 120.00114 * 0.02562 * 15 14 13 41 41 H 1.09003 * 109.46577 * 299.72585 * 18 16 15 42 42 H 1.08997 * 109.46838 * 59.72089 * 18 16 15 43 43 H 1.07998 * 119.94517 * 359.96812 * 20 19 18 44 44 H 1.08007 * 119.97042 * 180.02562 * 21 20 19 45 45 H 1.08998 * 109.47306 * 89.99917 * 23 22 21 46 46 H 1.09006 * 109.47005 * 209.99771 * 23 22 21 47 47 H 1.08995 * 109.47305 * 329.99947 * 23 22 21 48 48 H 1.09001 * 109.47041 * 59.99335 * 26 25 24 49 49 H 1.08997 * 109.47320 * 179.97438 * 26 25 24 50 50 H 1.09001 * 109.47222 * 299.99819 * 26 25 24 51 51 H 1.07999 * 120.02752 * 0.02562 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0633 -1.1807 5 1 1.4106 1.9279 -1.9627 6 6 3.2112 2.9290 -1.3727 7 7 4.3027 2.7981 -0.6489 8 14 3.0993 4.2798 -2.6582 9 1 1.7776 4.2136 -3.3319 10 1 3.2550 5.6024 -2.0012 11 1 4.1766 4.0966 -3.6637 12 6 2.3731 2.0326 1.2634 13 6 1.1424 2.7382 1.8366 14 6 1.5132 3.4190 3.1557 15 7 0.3350 4.0951 3.7043 16 6 0.4250 4.7670 4.8691 17 8 1.4812 4.8115 5.4635 18 6 -0.7886 5.4572 5.4366 19 6 -0.4246 6.1237 6.7382 20 6 0.0332 7.4287 6.7419 21 6 0.3675 8.0430 7.9343 22 6 0.2443 7.3545 9.1258 23 6 0.6083 8.0251 10.4254 24 6 -0.2146 6.0456 9.1249 25 8 -0.3371 5.3664 10.2956 26 6 -0.8165 4.0223 10.2188 27 6 -0.5541 5.4327 7.9272 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 5.0491 3.4027 -0.7834 34 1 3.1617 2.7641 1.0861 35 1 2.7254 1.2833 1.9722 36 1 0.3540 2.0068 2.0139 37 1 0.7902 3.4876 1.1278 38 1 2.3015 4.1506 2.9780 39 1 1.8657 2.6700 3.8647 40 1 -0.5100 4.0592 3.2291 41 1 -1.1428 6.2082 4.7304 42 1 -1.5752 4.7234 5.6117 43 1 0.1299 7.9686 5.8116 44 1 0.7244 9.0624 7.9346 45 1 -0.2695 8.5253 10.8345 46 1 0.9630 7.2763 11.1338 47 1 1.3947 8.7587 10.2480 48 1 -0.1381 3.4292 9.6056 49 1 -0.8662 3.5965 11.2210 50 1 -1.8103 4.0160 9.7713 51 1 -0.9156 4.4151 7.9242 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689942556.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:29 Heat of formation + Delta-G solvation = -66.524155 kcal Electronic energy + Delta-G solvation = -28179.480663 eV Core-core repulsion = 24271.401230 eV Total energy + Delta-G solvation = -3908.079432 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.41651 -40.53625 -38.48714 -38.12219 -36.15182 -34.73033 -33.81265 -32.82714 -31.11021 -30.81591 -30.00036 -28.43219 -27.25308 -26.11154 -24.96234 -23.20041 -22.61454 -22.27326 -21.98998 -21.18552 -18.64851 -18.52002 -17.96503 -17.47597 -17.02360 -16.76622 -16.67978 -16.53394 -16.42383 -15.80928 -15.51928 -15.16606 -15.06460 -14.69236 -14.64645 -14.33335 -14.26933 -14.06687 -13.79823 -13.45257 -13.22315 -13.17180 -12.93303 -12.87358 -12.78296 -12.72225 -12.63424 -12.54245 -12.29721 -12.20767 -12.12357 -11.97128 -11.92050 -11.77414 -11.45714 -11.24325 -10.93999 -10.50207 -10.08017 -9.67894 -9.02870 -8.54496 -7.80570 -5.44840 0.30395 0.49292 1.44149 1.48005 1.57452 1.66064 2.21469 2.38507 2.51321 2.82453 3.24850 3.58245 3.67696 3.84253 3.96975 4.05673 4.16035 4.21205 4.29434 4.31190 4.35295 4.37053 4.45871 4.55286 4.55634 4.63065 4.67246 4.70948 4.74129 4.76932 4.78490 4.83427 4.89429 4.94977 5.03712 5.05361 5.17114 5.28976 5.34423 5.35030 5.45723 5.48486 5.52212 5.61399 5.62010 5.70527 5.84913 5.86489 6.43781 6.48630 6.60645 7.19182 7.29363 7.89230 8.41768 9.14102 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016382 B = 0.002106 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.767371 B =13294.454655 C =14317.313067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.133 3.867 3 N -0.601 5.601 4 C -0.261 4.261 5 H 0.056 0.944 6 C -0.038 4.038 7 N -0.919 5.919 8 Si 0.954 3.046 9 H -0.265 1.265 10 H -0.290 1.290 11 H -0.293 1.293 12 C 0.150 3.850 13 C -0.121 4.121 14 C 0.134 3.866 15 N -0.716 5.716 16 C 0.508 3.492 17 O -0.585 6.585 18 C -0.094 4.094 19 C -0.045 4.045 20 C -0.152 4.152 21 C -0.090 4.090 22 C -0.137 4.137 23 C -0.100 4.100 24 C 0.108 3.892 25 O -0.330 6.330 26 C 0.020 3.980 27 C -0.200 4.200 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.036 0.964 31 H 0.028 0.972 32 H 0.044 0.956 33 H 0.250 0.750 34 H 0.058 0.942 35 H 0.025 0.975 36 H 0.071 0.929 37 H 0.053 0.947 38 H 0.039 0.961 39 H 0.056 0.944 40 H 0.416 0.584 41 H 0.132 0.868 42 H 0.132 0.868 43 H 0.133 0.867 44 H 0.149 0.851 45 H 0.077 0.923 46 H 0.061 0.939 47 H 0.076 0.924 48 H 0.050 0.950 49 H 0.121 0.879 50 H 0.066 0.934 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.958 6.530 19.827 26.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.008 3.992 3 N -0.323 5.323 4 C -0.391 4.391 5 H 0.074 0.926 6 C -0.236 4.236 7 N -0.564 5.564 8 Si 0.782 3.218 9 H -0.189 1.189 10 H -0.217 1.217 11 H -0.220 1.220 12 C 0.023 3.977 13 C -0.161 4.161 14 C 0.009 3.991 15 N -0.368 5.368 16 C 0.295 3.705 17 O -0.464 6.464 18 C -0.133 4.133 19 C -0.046 4.046 20 C -0.171 4.171 21 C -0.107 4.107 22 C -0.138 4.138 23 C -0.156 4.156 24 C 0.063 3.937 25 O -0.244 6.244 26 C -0.075 4.075 27 C -0.219 4.219 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.047 0.953 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.044 0.956 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.253 0.747 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.151 0.849 44 H 0.166 0.834 45 H 0.095 0.905 46 H 0.080 0.920 47 H 0.095 0.905 48 H 0.069 0.931 49 H 0.139 0.861 50 H 0.085 0.915 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -15.015 6.647 20.415 26.199 hybrid contribution 0.232 0.267 -1.247 1.296 sum -14.783 6.914 19.168 25.174 Atomic orbital electron populations 1.22161 0.97115 1.00786 1.00902 1.21006 0.93963 0.85694 0.98559 1.43995 1.76456 1.09569 1.02265 1.19211 1.04020 1.21062 0.94828 0.92615 1.25876 0.94047 1.03450 1.00188 1.70143 1.03845 1.38112 1.44253 0.85425 0.77780 0.79548 0.79004 1.18907 1.21704 1.22030 1.20703 0.95428 0.96055 0.85543 1.22148 1.00538 0.99543 0.93890 1.21082 0.87791 0.95358 0.94866 1.45993 1.14216 1.53214 1.23385 1.21182 0.90616 0.78286 0.80378 1.90720 1.32557 1.62296 1.60864 1.20745 0.95681 1.01839 0.95079 1.19296 0.97578 0.94050 0.93639 1.21176 1.01726 0.95210 0.98944 1.21124 0.98272 1.00510 0.90839 1.19620 1.04271 0.92258 0.97645 1.20597 1.02036 1.00095 0.92909 1.19002 0.97358 0.92236 0.85134 1.86015 1.81749 1.28214 1.28403 1.23287 0.99190 0.79642 1.05349 1.21222 1.07553 1.01207 0.91883 0.91678 0.92897 0.94466 0.95337 0.93804 0.94073 0.92403 0.95609 0.90999 0.92812 0.94249 0.92591 0.74716 0.85031 0.85029 0.84922 0.83363 0.90485 0.92030 0.90520 0.93096 0.86095 0.91492 0.84548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.88 10.21 71.98 0.73 -4.14 16 2 C 0.13 5.38 6.44 86.38 0.56 5.94 16 3 N -0.60 -28.92 2.43 -701.99 -1.71 -30.63 16 4 C -0.26 -13.90 9.45 84.04 0.79 -13.11 16 5 H 0.06 2.97 7.92 -2.91 -0.02 2.94 16 6 C -0.04 -2.11 4.95 84.86 0.42 -1.69 16 7 N -0.92 -53.77 11.47 21.65 0.25 -53.52 16 8 Si 0.95 44.06 29.60 68.60 2.03 46.09 16 9 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 10 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 11 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 12 C 0.15 6.78 5.33 86.38 0.46 7.24 16 13 C -0.12 -4.27 5.65 30.60 0.17 -4.10 16 14 C 0.13 4.41 5.67 86.38 0.49 4.90 16 15 N -0.72 -18.01 5.56 -463.05 -2.57 -20.58 16 16 C 0.51 13.63 7.82 87.66 0.69 14.31 16 17 O -0.58 -21.83 16.03 -3.03 -0.05 -21.88 16 18 C -0.09 -1.63 5.83 29.10 0.17 -1.46 16 19 C -0.05 -1.00 4.37 -19.88 -0.09 -1.08 16 20 C -0.15 -3.32 9.70 22.28 0.22 -3.11 16 21 C -0.09 -1.85 9.70 22.25 0.22 -1.63 16 22 C -0.14 -3.02 5.89 -19.77 -0.12 -3.14 16 23 C -0.10 -1.69 9.79 71.24 0.70 -1.00 16 24 C 0.11 2.53 6.66 22.51 0.15 2.68 16 25 O -0.33 -7.03 9.54 -92.44 -0.88 -7.91 16 26 C 0.02 0.27 9.81 113.37 1.11 1.39 16 27 C -0.20 -4.48 8.69 22.37 0.19 -4.28 16 28 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.05 1.61 6.64 -2.39 -0.02 1.59 16 30 H 0.04 1.28 8.14 -2.39 -0.02 1.27 16 31 H 0.03 1.21 8.08 -2.38 -0.02 1.19 16 32 H 0.04 1.66 7.83 -2.39 -0.02 1.64 16 33 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 34 H 0.06 3.10 5.52 -2.38 -0.01 3.09 16 35 H 0.03 1.13 7.86 -2.39 -0.02 1.11 16 36 H 0.07 2.25 6.64 -2.39 -0.02 2.23 16 37 H 0.05 2.02 8.14 -2.38 -0.02 2.01 16 38 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.42 7.59 8.47 -92.71 -0.79 6.80 16 41 H 0.13 1.58 8.09 -2.39 -0.02 1.56 16 42 H 0.13 1.48 8.08 -2.39 -0.02 1.46 16 43 H 0.13 2.48 8.06 -2.91 -0.02 2.45 16 44 H 0.15 2.27 8.06 -2.91 -0.02 2.24 16 45 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.06 1.12 7.53 -2.38 -0.02 1.10 16 47 H 0.08 1.08 8.09 -2.39 -0.02 1.06 16 48 H 0.05 0.76 7.67 -2.39 -0.02 0.74 16 49 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 50 H 0.07 0.74 7.65 -2.39 -0.02 0.73 16 51 H 0.14 2.55 6.30 -2.91 -0.02 2.54 16 Total: -1.00 -72.91 415.73 4.06 -68.85 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: 0.13 Total: 21.86 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: 6.87 Total: -2.28 kcal Atomic # 7 Polarization: -100.70 SS G_CDS: -4.03 Total: -104.73 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -0.93 Total: -29.79 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -72.91 4.06 -68.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689942556.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.326 kcal (2) G-P(sol) polarization free energy of solvation -72.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds