Wall clock time and date at job start Tue Mar 31 2020 19:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42896 * 109.46785 * 2 1 4 4 C 1.35913 * 117.00104 * 179.97438 * 3 2 1 5 5 C 1.38850 * 119.98353 * 0.02703 * 4 3 2 6 6 C 1.38247 * 120.24210 * 179.97438 * 5 4 3 7 7 C 1.38006 * 120.20203 * 359.67645 * 6 5 4 8 8 C 1.39559 * 119.96815 * 0.59761 * 7 6 5 9 9 C 1.47855 * 120.12155 * 179.69862 * 8 7 6 10 10 O 1.21550 * 120.00319 * 179.72286 * 9 8 7 11 11 N 1.34779 * 120.00027 * 359.72659 * 9 8 7 12 12 C 1.46494 * 120.00531 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.47008 * 325.00296 * 12 11 9 14 14 C 1.52996 * 109.47509 * 205.00222 * 12 11 9 15 15 N 1.46498 * 109.47059 * 54.99655 * 14 12 11 16 16 C 1.36943 * 119.99752 * 179.72430 * 15 14 12 17 17 H 1.08002 * 119.99793 * 0.27665 * 16 15 14 18 18 C 1.38811 * 120.00012 * 180.27737 * 16 15 14 19 19 N 1.31624 * 119.99698 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00072 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47213 * 60.00246 * 20 18 16 22 22 H 1.48502 * 109.47317 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47081 * 299.99875 * 20 18 16 24 24 C 1.53004 * 109.47171 * 84.99693 * 12 11 9 25 25 C 1.52999 * 109.46989 * 295.00630 * 24 12 11 26 26 C 1.53000 * 109.46823 * 174.99871 * 25 24 12 27 27 C 1.53002 * 109.47150 * 294.99387 * 25 24 12 28 28 C 1.38453 * 119.98665 * 179.97438 * 4 3 2 29 29 H 1.09000 * 109.47072 * 299.99720 * 1 2 3 30 30 H 1.09004 * 109.47429 * 59.99952 * 1 2 3 31 31 H 1.09002 * 109.46829 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47072 * 240.00280 * 2 1 3 33 33 H 1.08991 * 109.47082 * 119.99979 * 2 1 3 34 34 H 1.08004 * 119.88128 * 359.97438 * 5 4 3 35 35 H 1.07999 * 119.89375 * 179.97438 * 6 5 4 36 36 H 1.08006 * 120.01499 * 180.30004 * 7 6 5 37 37 H 0.97009 * 119.99558 * 0.02562 * 11 9 8 38 38 H 1.09004 * 109.47066 * 294.99922 * 14 12 11 39 39 H 1.08994 * 109.46974 * 175.00070 * 14 12 11 40 40 H 0.97001 * 120.00384 * 0.02562 * 15 14 12 41 41 H 0.96999 * 119.99739 * 180.02562 * 19 18 16 42 42 H 1.08997 * 109.46462 * 55.00239 * 24 12 11 43 43 H 1.08995 * 109.46930 * 175.00449 * 24 12 11 44 44 H 1.08997 * 109.47498 * 54.99671 * 25 24 12 45 45 H 1.08997 * 109.47247 * 59.99646 * 26 25 24 46 46 H 1.09000 * 109.47485 * 180.02562 * 26 25 24 47 47 H 1.09006 * 109.47094 * 299.99726 * 26 25 24 48 48 H 1.08997 * 109.47152 * 300.00495 * 27 25 24 49 49 H 1.09001 * 109.46642 * 60.00173 * 27 25 24 50 50 H 1.08993 * 109.46832 * 180.02562 * 27 25 24 51 51 H 1.07998 * 120.10417 * 0.04451 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5254 0.0005 5 6 4.1993 0.4241 0.0005 6 6 5.5706 0.5992 0.0005 7 6 6.1082 1.8702 -0.0062 8 6 5.2664 2.9833 -0.0003 9 6 5.8387 4.3465 -0.0007 10 8 5.1035 5.3144 -0.0008 11 7 7.1758 4.5160 -0.0012 12 6 7.7431 5.8667 -0.0021 13 1 7.1074 6.5272 -0.5918 14 6 9.1457 5.8304 -0.6121 15 7 9.0838 5.2219 -1.9433 16 6 10.2249 5.0870 -2.6882 17 1 11.1712 5.4251 -2.2925 18 6 10.1653 4.5157 -3.9519 19 7 9.0119 4.1041 -4.4343 20 14 11.7220 4.3310 -4.9677 21 1 12.6934 3.4799 -4.2347 22 1 11.3914 3.6972 -6.2694 23 1 12.3186 5.6697 -5.2070 24 6 7.8249 6.3865 1.4346 25 6 6.4125 6.5409 2.0023 26 6 6.4965 6.9407 3.4767 27 6 5.6649 7.6240 1.2220 28 6 3.8825 2.8050 0.0000 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.7842 -0.5730 0.0004 35 1 6.2231 -0.2614 0.0009 36 1 7.1800 2.0034 -0.0110 37 1 7.7626 3.7435 -0.0016 38 1 9.8044 5.2415 0.0263 39 1 9.5324 6.8461 -0.6944 40 1 8.2338 4.9185 -2.2988 41 1 8.9703 3.7045 -5.3172 42 1 8.3866 5.6796 2.0452 43 1 8.3276 7.3536 1.4429 44 1 5.8792 5.5946 1.9122 45 1 7.0298 7.8870 3.5668 46 1 5.4903 7.0502 3.8814 47 1 7.0292 6.1690 4.0327 48 1 6.1982 8.5703 1.3121 49 1 5.6051 7.3392 0.1716 50 1 4.6589 7.7343 1.6268 51 1 3.2259 3.6625 -0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698872662.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:02 Heat of formation + Delta-G solvation = -50.804384 kcal Electronic energy + Delta-G solvation = -29396.281159 eV Core-core repulsion = 25488.883387 eV Total energy + Delta-G solvation = -3907.397772 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.50304 -39.62664 -37.53513 -36.40708 -34.93115 -33.47564 -32.24289 -31.52798 -30.80598 -29.68214 -28.77457 -26.84497 -25.54878 -24.73541 -23.17567 -22.55173 -22.44117 -20.79033 -20.06787 -19.63961 -18.58158 -17.16719 -16.59265 -16.31726 -16.25410 -15.78248 -15.61260 -15.36137 -14.66351 -14.22227 -14.00517 -13.84744 -13.59859 -13.59069 -13.41206 -13.25938 -12.99301 -12.89057 -12.84990 -12.22277 -12.18715 -11.99194 -11.97635 -11.87218 -11.74367 -11.46746 -11.03151 -10.99964 -10.95294 -10.93865 -10.79931 -10.50095 -10.22874 -10.21675 -9.98828 -9.71081 -9.49814 -9.03408 -8.91213 -8.56320 -8.29863 -6.95987 -5.77502 -3.07608 0.87207 1.38980 2.93546 3.06574 3.42457 3.47268 3.48295 3.57263 3.96020 4.55998 4.60364 4.63040 4.71677 4.84430 4.92329 4.98784 5.02865 5.14564 5.20216 5.22950 5.24682 5.40209 5.48640 5.50208 5.53994 5.64162 5.68702 5.73358 5.75107 5.89650 5.91314 6.00130 6.07803 6.13908 6.15403 6.17202 6.23559 6.31627 6.33336 6.36180 6.47406 6.52233 6.57592 6.68617 6.72527 6.89246 6.99335 7.28485 7.67544 7.90410 8.40040 8.57242 9.51795 10.07898 10.43380 11.44438 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.008328 B = 0.003544 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3361.403021 B = 7899.778233 C =10525.480838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.315 6.315 4 C 0.117 3.883 5 C -0.189 4.189 6 C -0.087 4.087 7 C -0.117 4.117 8 C -0.087 4.087 9 C 0.557 3.443 10 O -0.530 6.530 11 N -0.702 5.702 12 C 0.136 3.864 13 H 0.092 0.908 14 C 0.144 3.856 15 N -0.731 5.731 16 C -0.244 4.244 17 H 0.070 0.930 18 C -0.011 4.011 19 N -0.930 5.930 20 Si 0.907 3.093 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.122 4.122 25 C -0.093 4.093 26 C -0.146 4.146 27 C -0.138 4.138 28 C -0.094 4.094 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.403 0.597 38 H 0.024 0.976 39 H 0.033 0.967 40 H 0.386 0.614 41 H 0.256 0.744 42 H 0.061 0.939 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.049 0.951 46 H 0.048 0.952 47 H 0.047 0.953 48 H 0.038 0.962 49 H 0.076 0.924 50 H 0.042 0.958 51 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.297 -7.179 14.575 20.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.229 6.229 4 C 0.072 3.928 5 C -0.208 4.208 6 C -0.105 4.105 7 C -0.136 4.136 8 C -0.090 4.090 9 C 0.344 3.656 10 O -0.409 6.409 11 N -0.353 5.353 12 C 0.032 3.968 13 H 0.110 0.890 14 C 0.015 3.985 15 N -0.376 5.376 16 C -0.375 4.375 17 H 0.088 0.912 18 C -0.208 4.208 19 N -0.578 5.578 20 Si 0.738 3.262 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.161 4.161 25 C -0.112 4.112 26 C -0.203 4.203 27 C -0.195 4.195 28 C -0.113 4.113 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.149 0.851 37 H 0.239 0.761 38 H 0.041 0.959 39 H 0.051 0.949 40 H 0.221 0.779 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.089 0.911 44 H 0.094 0.906 45 H 0.069 0.931 46 H 0.067 0.933 47 H 0.066 0.934 48 H 0.057 0.943 49 H 0.095 0.905 50 H 0.062 0.938 51 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -12.785 -6.321 14.506 20.343 hybrid contribution 1.059 -0.959 -0.836 1.656 sum -11.726 -7.280 13.669 19.425 Atomic orbital electron populations 1.21776 0.92757 1.02763 1.03643 1.22776 0.95900 0.82092 1.01356 1.86087 1.18848 1.29132 1.88875 1.18790 0.82399 0.93806 0.97755 1.21374 0.94475 0.97972 1.06994 1.20874 0.94236 0.97305 0.98082 1.21313 1.00018 0.91950 1.00317 1.19798 0.93150 0.93593 1.02502 1.18077 0.82733 0.88218 0.76609 1.90751 1.59730 1.40602 1.49795 1.45880 1.06091 1.09706 1.73592 1.21403 0.96131 0.83311 0.95996 0.88977 1.20971 0.92157 0.97189 0.88133 1.42352 1.08750 1.72830 1.13671 1.19159 0.87774 1.33641 0.96889 0.91233 1.24749 0.96776 1.01598 0.97637 1.69664 1.23240 1.46504 1.18350 0.86277 0.82594 0.77696 0.79629 1.21300 1.21722 1.21286 1.22022 0.97086 1.01256 0.95722 1.21146 0.95815 1.00418 0.93802 1.21866 1.00966 1.00797 0.96686 1.21830 0.98669 0.96722 1.02291 1.20436 0.94113 0.95337 1.01453 0.91513 0.91404 0.90437 0.91976 0.92101 0.85405 0.85181 0.85082 0.76116 0.95863 0.94883 0.77940 0.93445 0.91978 0.91111 0.90647 0.93142 0.93265 0.93372 0.94329 0.90492 0.93847 0.83952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 10.28 37.16 0.38 -0.60 16 2 C 0.05 0.44 5.46 37.16 0.20 0.65 16 3 O -0.32 -3.84 10.13 -19.47 -0.20 -4.03 16 4 C 0.12 1.54 6.68 -39.28 -0.26 1.27 16 5 C -0.19 -2.13 9.03 -39.35 -0.36 -2.49 16 6 C -0.09 -1.00 10.03 -39.66 -0.40 -1.40 16 7 C -0.12 -1.56 9.54 -39.17 -0.37 -1.93 16 8 C -0.09 -1.32 5.87 -104.99 -0.62 -1.93 16 9 C 0.56 9.28 6.33 -12.32 -0.08 9.20 16 10 O -0.53 -9.77 11.30 5.32 0.06 -9.71 16 11 N -0.70 -11.23 4.42 -54.75 -0.24 -11.47 16 12 C 0.14 2.25 2.33 -67.93 -0.16 2.09 16 13 H 0.09 1.72 5.92 -51.93 -0.31 1.42 16 14 C 0.14 2.76 5.82 -4.04 -0.02 2.74 16 15 N -0.73 -17.93 5.43 -59.91 -0.33 -18.25 16 16 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 17 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 18 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 19 N -0.93 -27.85 13.06 55.49 0.72 -27.12 16 20 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 C -0.12 -1.69 4.36 -26.73 -0.12 -1.80 16 25 C -0.09 -1.30 2.38 -90.62 -0.22 -1.51 16 26 C -0.15 -1.72 9.19 37.16 0.34 -1.38 16 27 C -0.14 -2.02 8.03 37.16 0.30 -1.73 16 28 C -0.09 -1.38 9.53 -39.02 -0.37 -1.76 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.46 7.66 -51.93 -0.40 0.07 16 33 H 0.06 0.42 7.66 -51.93 -0.40 0.03 16 34 H 0.13 1.09 6.28 -52.48 -0.33 0.76 16 35 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 36 H 0.13 1.62 6.40 -52.48 -0.34 1.29 16 37 H 0.40 6.16 6.63 -40.82 -0.27 5.89 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.39 10.17 7.33 -40.82 -0.30 9.87 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.08 1.18 5.19 -51.93 -0.27 0.91 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.08 1.30 4.75 -51.93 -0.25 1.06 16 50 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 51 H 0.14 2.16 7.65 -52.49 -0.40 1.76 16 LS Contribution 402.94 15.07 6.07 6.07 Total: -1.00 -31.60 402.94 -9.22 -40.82 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: -8.30 Total: 14.36 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: -1.99 Total: -7.80 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: 0.16 Total: -56.85 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -0.14 Total: -13.74 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.60 -9.22 -40.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698872662.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.984 kcal (2) G-P(sol) polarization free energy of solvation -31.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds