Wall clock time and date at job start Tue Mar 31 2020 19:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42896 * 109.46785 * 2 1 4 4 C 1.35913 * 117.00104 * 179.97438 * 3 2 1 5 5 C 1.38850 * 119.98353 * 0.02703 * 4 3 2 6 6 C 1.38247 * 120.24210 * 179.97438 * 5 4 3 7 7 C 1.38006 * 120.20203 * 359.67645 * 6 5 4 8 8 C 1.39559 * 119.96815 * 0.59761 * 7 6 5 9 9 C 1.47855 * 120.12155 * 179.69862 * 8 7 6 10 10 O 1.21550 * 120.00319 * 179.72286 * 9 8 7 11 11 N 1.34779 * 120.00027 * 359.72659 * 9 8 7 12 12 C 1.46494 * 120.00531 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.47008 * 325.00296 * 12 11 9 14 14 C 1.52996 * 109.47509 * 205.00222 * 12 11 9 15 15 N 1.46498 * 109.47059 * 54.99655 * 14 12 11 16 16 C 1.36943 * 119.99752 * 179.72430 * 15 14 12 17 17 H 1.08002 * 119.99793 * 0.27665 * 16 15 14 18 18 C 1.38811 * 120.00012 * 180.27737 * 16 15 14 19 19 N 1.31624 * 119.99698 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00072 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47213 * 60.00246 * 20 18 16 22 22 H 1.48502 * 109.47317 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47081 * 299.99875 * 20 18 16 24 24 C 1.53004 * 109.47171 * 84.99693 * 12 11 9 25 25 C 1.52999 * 109.46989 * 295.00630 * 24 12 11 26 26 C 1.53000 * 109.46823 * 174.99871 * 25 24 12 27 27 C 1.53002 * 109.47150 * 294.99387 * 25 24 12 28 28 C 1.38453 * 119.98665 * 179.97438 * 4 3 2 29 29 H 1.09000 * 109.47072 * 299.99720 * 1 2 3 30 30 H 1.09004 * 109.47429 * 59.99952 * 1 2 3 31 31 H 1.09002 * 109.46829 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47072 * 240.00280 * 2 1 3 33 33 H 1.08991 * 109.47082 * 119.99979 * 2 1 3 34 34 H 1.08004 * 119.88128 * 359.97438 * 5 4 3 35 35 H 1.07999 * 119.89375 * 179.97438 * 6 5 4 36 36 H 1.08006 * 120.01499 * 180.30004 * 7 6 5 37 37 H 0.97009 * 119.99558 * 0.02562 * 11 9 8 38 38 H 1.09004 * 109.47066 * 294.99922 * 14 12 11 39 39 H 1.08994 * 109.46974 * 175.00070 * 14 12 11 40 40 H 0.97001 * 120.00384 * 0.02562 * 15 14 12 41 41 H 0.96999 * 119.99739 * 180.02562 * 19 18 16 42 42 H 1.08997 * 109.46462 * 55.00239 * 24 12 11 43 43 H 1.08995 * 109.46930 * 175.00449 * 24 12 11 44 44 H 1.08997 * 109.47498 * 54.99671 * 25 24 12 45 45 H 1.08997 * 109.47247 * 59.99646 * 26 25 24 46 46 H 1.09000 * 109.47485 * 180.02562 * 26 25 24 47 47 H 1.09006 * 109.47094 * 299.99726 * 26 25 24 48 48 H 1.08997 * 109.47152 * 300.00495 * 27 25 24 49 49 H 1.09001 * 109.46642 * 60.00173 * 27 25 24 50 50 H 1.08993 * 109.46832 * 180.02562 * 27 25 24 51 51 H 1.07998 * 120.10417 * 0.04451 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5254 0.0005 5 6 4.1993 0.4241 0.0005 6 6 5.5706 0.5992 0.0005 7 6 6.1082 1.8702 -0.0062 8 6 5.2664 2.9833 -0.0003 9 6 5.8387 4.3465 -0.0007 10 8 5.1035 5.3144 -0.0008 11 7 7.1758 4.5160 -0.0012 12 6 7.7431 5.8667 -0.0021 13 1 7.1074 6.5272 -0.5918 14 6 9.1457 5.8304 -0.6121 15 7 9.0838 5.2219 -1.9433 16 6 10.2249 5.0870 -2.6882 17 1 11.1712 5.4251 -2.2925 18 6 10.1653 4.5157 -3.9519 19 7 9.0119 4.1041 -4.4343 20 14 11.7220 4.3310 -4.9677 21 1 12.6934 3.4799 -4.2347 22 1 11.3914 3.6972 -6.2694 23 1 12.3186 5.6697 -5.2070 24 6 7.8249 6.3865 1.4346 25 6 6.4125 6.5409 2.0023 26 6 6.4965 6.9407 3.4767 27 6 5.6649 7.6240 1.2220 28 6 3.8825 2.8050 0.0000 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.7842 -0.5730 0.0004 35 1 6.2231 -0.2614 0.0009 36 1 7.1800 2.0034 -0.0110 37 1 7.7626 3.7435 -0.0016 38 1 9.8044 5.2415 0.0263 39 1 9.5324 6.8461 -0.6944 40 1 8.2338 4.9185 -2.2988 41 1 8.9703 3.7045 -5.3172 42 1 8.3866 5.6796 2.0452 43 1 8.3276 7.3536 1.4429 44 1 5.8792 5.5946 1.9122 45 1 7.0298 7.8870 3.5668 46 1 5.4903 7.0502 3.8814 47 1 7.0292 6.1690 4.0327 48 1 6.1982 8.5703 1.3121 49 1 5.6051 7.3392 0.1716 50 1 4.6589 7.7343 1.6268 51 1 3.2259 3.6625 -0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698872662.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:02 Heat of formation + Delta-G solvation = -69.528290 kcal Electronic energy + Delta-G solvation = -29397.093088 eV Core-core repulsion = 25488.883387 eV Total energy + Delta-G solvation = -3908.209701 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.61465 -40.72136 -38.58049 -37.68710 -36.43048 -35.06593 -33.21418 -32.85400 -32.08739 -30.85734 -30.00788 -27.94631 -27.17268 -25.72308 -24.64961 -23.77385 -23.41726 -22.10545 -21.25724 -20.80163 -19.70522 -19.07792 -17.72952 -17.37175 -17.07938 -16.95824 -16.87663 -16.46604 -16.41274 -15.46041 -15.39117 -15.18730 -14.94150 -14.69674 -14.50327 -14.38252 -14.34919 -14.17921 -13.65764 -13.40300 -13.25663 -13.04518 -13.01349 -12.93516 -12.86951 -12.74575 -12.60991 -12.54489 -12.31767 -12.12897 -11.88356 -11.86508 -11.66628 -11.62409 -11.38416 -11.23989 -10.95519 -10.78413 -10.10376 -9.85240 -9.27790 -8.99242 -7.91871 -5.21724 -0.19093 0.38584 1.49010 1.51687 1.57709 1.88867 2.01993 2.42285 2.57721 2.85829 3.41849 3.61462 3.74734 3.78057 3.99983 4.03284 4.07226 4.09814 4.13570 4.16896 4.26391 4.32370 4.37505 4.39794 4.43498 4.51475 4.67834 4.80281 4.82151 4.89042 4.90774 4.92328 4.94026 4.94749 5.00490 5.10479 5.15086 5.17224 5.23667 5.26762 5.30326 5.36539 5.40425 5.52381 5.58618 5.59665 5.67243 5.68914 6.28003 6.40756 6.61528 7.28379 7.35508 8.09327 8.33213 9.30657 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.008328 B = 0.003544 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3361.403021 B = 7899.778233 C =10525.480838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.042 3.958 3 O -0.335 6.335 4 C 0.114 3.886 5 C -0.179 4.179 6 C -0.082 4.082 7 C -0.126 4.126 8 C -0.106 4.106 9 C 0.552 3.448 10 O -0.556 6.556 11 N -0.698 5.698 12 C 0.146 3.854 13 H 0.066 0.934 14 C 0.145 3.855 15 N -0.743 5.743 16 C -0.244 4.244 17 H 0.079 0.921 18 C -0.073 4.073 19 N -0.967 5.967 20 Si 0.973 3.027 21 H -0.275 1.275 22 H -0.299 1.299 23 H -0.281 1.281 24 C -0.113 4.113 25 C -0.091 4.091 26 C -0.140 4.140 27 C -0.133 4.133 28 C -0.117 4.117 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.103 0.897 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.162 0.838 35 H 0.163 0.837 36 H 0.137 0.863 37 H 0.406 0.594 38 H 0.040 0.960 39 H 0.037 0.963 40 H 0.374 0.626 41 H 0.249 0.751 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.055 0.945 45 H 0.061 0.939 46 H 0.050 0.950 47 H 0.058 0.942 48 H 0.051 0.949 49 H 0.048 0.952 50 H 0.040 0.960 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.228 -8.825 16.044 21.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.032 4.032 3 O -0.249 6.249 4 C 0.069 3.931 5 C -0.198 4.198 6 C -0.100 4.100 7 C -0.145 4.145 8 C -0.109 4.109 9 C 0.340 3.660 10 O -0.436 6.436 11 N -0.349 5.349 12 C 0.041 3.959 13 H 0.084 0.916 14 C 0.018 3.982 15 N -0.386 5.386 16 C -0.375 4.375 17 H 0.097 0.903 18 C -0.266 4.266 19 N -0.618 5.618 20 Si 0.802 3.198 21 H -0.200 1.200 22 H -0.226 1.226 23 H -0.208 1.208 24 C -0.151 4.151 25 C -0.109 4.109 26 C -0.197 4.197 27 C -0.191 4.191 28 C -0.137 4.137 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.122 0.878 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.180 0.820 35 H 0.180 0.820 36 H 0.155 0.845 37 H 0.243 0.757 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.206 0.794 41 H 0.058 0.942 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.074 0.926 45 H 0.081 0.919 46 H 0.069 0.931 47 H 0.077 0.923 48 H 0.070 0.930 49 H 0.067 0.933 50 H 0.059 0.941 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -11.693 -7.956 16.022 21.371 hybrid contribution 0.642 -0.465 -1.249 1.479 sum -11.051 -8.421 14.773 20.280 Atomic orbital electron populations 1.21820 0.91641 1.04268 1.03027 1.23142 0.96889 0.80475 1.02680 1.86082 1.18336 1.31812 1.88706 1.18858 0.83258 0.93617 0.97415 1.21742 0.94189 0.98846 1.04987 1.21270 0.94877 0.97417 0.96406 1.21473 1.00145 0.92313 1.00527 1.19722 0.93549 0.93194 1.04415 1.18409 0.82695 0.88857 0.75996 1.90733 1.60256 1.41612 1.51019 1.45815 1.06036 1.09594 1.73452 1.21228 0.93977 0.83355 0.97340 0.91607 1.21122 0.94049 0.96962 0.86075 1.42530 1.07522 1.73129 1.15393 1.19588 0.88817 1.32051 0.97062 0.90318 1.25547 0.99605 1.02349 0.99081 1.69837 1.25356 1.48198 1.18390 0.85229 0.79256 0.77707 0.77630 1.20042 1.22561 1.20751 1.21959 0.97406 1.02111 0.93670 1.21078 0.95340 0.99168 0.95349 1.21802 1.01508 1.01673 0.94731 1.21760 0.99008 0.97649 1.00640 1.20395 0.93992 0.95961 1.03321 0.91907 0.92280 0.87815 0.90902 0.90324 0.82030 0.81961 0.84537 0.75680 0.94165 0.94512 0.79410 0.94199 0.90448 0.89814 0.92641 0.91945 0.93088 0.92339 0.92967 0.93327 0.94105 0.85847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 10.28 71.98 0.74 -0.99 16 2 C 0.04 0.62 5.46 71.98 0.39 1.01 16 3 O -0.33 -8.06 10.13 -92.57 -0.94 -8.99 16 4 C 0.11 2.96 6.68 22.47 0.15 3.11 16 5 C -0.18 -3.65 9.03 22.42 0.20 -3.44 16 6 C -0.08 -1.71 10.03 22.22 0.22 -1.49 16 7 C -0.13 -3.30 9.54 22.53 0.21 -3.08 16 8 C -0.11 -3.32 5.87 -20.10 -0.12 -3.44 16 9 C 0.55 19.43 6.33 86.79 0.55 19.98 16 10 O -0.56 -21.98 11.30 -3.87 -0.04 -22.02 16 11 N -0.70 -22.95 4.42 -445.41 -1.97 -24.91 16 12 C 0.15 4.87 2.33 44.99 0.10 4.98 16 13 H 0.07 2.58 5.92 -2.39 -0.01 2.57 16 14 C 0.14 5.48 5.82 86.38 0.50 5.98 16 15 N -0.74 -36.66 5.43 -343.46 -1.87 -38.53 16 16 C -0.24 -13.22 9.99 84.03 0.84 -12.38 16 17 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 18 C -0.07 -4.15 5.50 84.86 0.47 -3.69 16 19 N -0.97 -58.99 13.06 21.65 0.28 -58.71 16 20 Si 0.97 45.54 29.55 68.60 2.03 47.57 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 22 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 23 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 24 C -0.11 -3.00 4.36 30.60 0.13 -2.86 16 25 C -0.09 -2.50 2.38 -10.79 -0.03 -2.52 16 26 C -0.14 -3.06 9.19 71.98 0.66 -2.40 16 27 C -0.13 -3.99 8.03 71.98 0.58 -3.42 16 28 C -0.12 -3.64 9.53 22.63 0.22 -3.43 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 0.91 7.66 -2.39 -0.02 0.89 16 33 H 0.08 0.87 7.66 -2.39 -0.02 0.85 16 34 H 0.16 2.14 6.28 -2.91 -0.02 2.12 16 35 H 0.16 2.33 8.06 -2.91 -0.02 2.30 16 36 H 0.14 3.33 6.40 -2.91 -0.02 3.31 16 37 H 0.41 12.58 6.63 -92.70 -0.61 11.96 16 38 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 39 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.37 20.22 7.33 -92.71 -0.68 19.54 16 41 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 42 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.06 1.77 5.19 -2.39 -0.01 1.76 16 45 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 48 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 49 H 0.05 1.74 4.75 -2.39 -0.01 1.73 16 50 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 51 H 0.12 4.16 7.65 -2.91 -0.02 4.14 16 Total: -1.00 -69.80 402.94 2.97 -66.83 By element: Atomic # 1 Polarization: 47.20 SS G_CDS: -0.36 Total: 46.84 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: 5.83 Total: -8.08 kcal Atomic # 7 Polarization: -118.60 SS G_CDS: -3.55 Total: -122.15 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -0.98 Total: -31.02 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -69.80 2.97 -66.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698872662.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.696 kcal (2) G-P(sol) polarization free energy of solvation -69.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds