Wall clock time and date at job start Tue Mar 31 2020 18:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47320 * 2 1 4 4 C 1.46499 * 119.99537 * 269.99999 * 3 2 1 5 5 C 1.53002 * 109.47088 * 269.99330 * 4 3 2 6 6 N 1.46499 * 109.47479 * 179.97438 * 5 4 3 7 7 C 1.36935 * 120.00366 * 180.02562 * 6 5 4 8 8 H 1.08000 * 119.99503 * 0.02562 * 7 6 5 9 9 C 1.38811 * 120.00138 * 180.02562 * 7 6 5 10 10 N 1.31622 * 120.00038 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99761 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47258 * 90.00359 * 11 9 7 13 13 H 1.48508 * 109.46597 * 210.00178 * 11 9 7 14 14 H 1.48501 * 109.47368 * 329.99681 * 11 9 7 15 15 C 1.34777 * 120.00264 * 89.99349 * 3 2 1 16 16 O 1.21283 * 119.99750 * 180.02562 * 15 3 2 17 17 C 1.50702 * 119.99928 * 0.28128 * 15 3 2 18 18 O 1.42899 * 109.46876 * 179.72354 * 17 15 3 19 19 C 1.35897 * 116.99793 * 179.97438 * 18 17 15 20 20 C 1.38763 * 120.05702 * 359.72171 * 19 18 17 21 21 C 1.38122 * 119.94152 * 179.69745 * 20 19 18 22 22 C 1.38283 * 120.05961 * 0.60477 * 21 20 19 23 23 C 1.38244 * 120.10851 * 359.66937 * 22 21 20 24 24 C 1.50704 * 119.97370 * 180.02562 * 23 22 21 25 25 C 1.52999 * 109.47117 * 299.98575 * 24 23 22 26 26 C 1.53007 * 109.46852 * 59.97937 * 24 23 22 27 27 C 1.38168 * 120.05720 * 0.02962 * 23 22 21 28 28 H 1.08992 * 109.47180 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47106 * 300.00561 * 1 2 3 30 30 H 1.09004 * 109.46895 * 60.00075 * 1 2 3 31 31 H 1.08994 * 109.47354 * 239.99891 * 2 1 3 32 32 H 1.09001 * 109.47139 * 119.99465 * 2 1 3 33 33 H 1.09001 * 109.47567 * 29.99407 * 4 3 2 34 34 H 1.09005 * 109.47076 * 149.99913 * 4 3 2 35 35 H 1.08999 * 109.47707 * 300.00330 * 5 4 3 36 36 H 1.09005 * 109.46685 * 60.00344 * 5 4 3 37 37 H 0.97004 * 119.99938 * 0.02562 * 6 5 4 38 38 H 0.96999 * 119.99574 * 179.97438 * 10 9 7 39 39 H 1.09004 * 109.46965 * 299.72211 * 17 15 3 40 40 H 1.08994 * 109.46990 * 59.72065 * 17 15 3 41 41 H 1.07995 * 120.02466 * 359.97438 * 20 19 18 42 42 H 1.08008 * 119.97008 * 180.29705 * 21 20 19 43 43 H 1.08001 * 119.94573 * 179.69726 * 22 21 20 44 44 H 1.08995 * 109.47778 * 179.97438 * 24 23 22 45 45 H 1.09002 * 109.47154 * 299.99401 * 25 24 23 46 46 H 1.08998 * 109.47597 * 59.99519 * 25 24 23 47 47 H 1.08998 * 109.46920 * 179.97438 * 25 24 23 48 48 H 1.09005 * 109.46969 * 60.00072 * 26 24 23 49 49 H 1.08998 * 109.47317 * 180.02562 * 26 24 23 50 50 H 1.08995 * 109.47352 * 300.00780 * 26 24 23 51 51 H 1.08002 * 120.02522 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.7076 1.8314 -1.7104 6 7 3.9517 2.5213 -2.9795 7 6 5.1837 2.4483 -3.5727 8 1 5.9753 1.8817 -3.1051 9 6 5.4150 3.1025 -4.7749 10 7 4.4503 3.7935 -5.3444 11 14 7.0955 3.0022 -5.5844 12 1 7.1355 1.8329 -6.4989 13 1 7.3471 4.2446 -6.3582 14 1 8.1399 2.8497 -4.5398 15 6 2.2429 2.0167 1.1672 16 8 2.6468 3.1603 1.1671 17 6 1.9977 1.3042 2.4723 18 8 2.3121 2.1781 3.5584 19 6 2.1441 1.6866 4.8142 20 6 1.6805 0.3917 4.9974 21 6 1.5166 -0.1076 6.2748 22 6 1.8021 0.6861 7.3706 23 6 2.2587 1.9785 7.1907 24 6 2.5695 2.8406 8.3871 25 6 1.3078 3.0090 9.2359 26 6 3.6628 2.1747 9.2252 27 6 2.4303 2.4805 5.9150 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.5818 1.6876 -2.0285 34 1 2.0956 3.1410 -1.1385 35 1 4.3884 2.2155 -0.9508 36 1 3.8745 0.7621 -1.8406 37 1 3.2405 3.0300 -3.3996 38 1 4.6122 4.2509 -6.1843 39 1 0.9499 1.0100 2.5343 40 1 2.6281 0.4167 2.5258 41 1 1.4523 -0.2268 4.1420 42 1 1.1603 -1.1171 6.4179 43 1 1.6686 0.2955 8.3686 44 1 2.9145 3.8183 8.0508 45 1 0.5288 3.4834 8.6389 46 1 0.9629 2.0313 9.5724 47 1 1.5327 3.6322 10.1015 48 1 4.5617 2.0547 8.6205 49 1 3.8873 2.7980 10.0908 50 1 3.3180 1.1970 9.5616 51 1 2.7874 3.4901 5.7750 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699182697.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:32 Heat of formation + Delta-G solvation = -43.882482 kcal Electronic energy + Delta-G solvation = -28091.707206 eV Core-core repulsion = 24184.609590 eV Total energy + Delta-G solvation = -3907.097616 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.72902 -39.77194 -38.16495 -36.22968 -35.21105 -34.62866 -31.93298 -31.14642 -30.38018 -29.71128 -28.97001 -27.50421 -26.95822 -23.93157 -23.69769 -23.11637 -22.87900 -21.57090 -20.39313 -19.11998 -18.16364 -17.16590 -17.13222 -16.60335 -16.49361 -15.98063 -15.64837 -15.26704 -14.89697 -14.42871 -14.30388 -14.04913 -13.88619 -13.84843 -13.72848 -13.60763 -13.27012 -13.09598 -12.94471 -12.80698 -12.65280 -12.40580 -12.37129 -12.02178 -11.68143 -11.63404 -11.39929 -11.30544 -11.14991 -11.09187 -10.99528 -10.92074 -10.87849 -10.67668 -10.10153 -9.80050 -9.65480 -9.10304 -8.86200 -8.62103 -8.43525 -6.92256 -5.74873 -3.04171 1.03287 1.18945 2.40044 2.57933 3.36114 3.45417 3.47245 3.50633 3.52905 4.22394 4.34322 4.47927 4.52164 4.62352 4.66058 4.72982 4.78594 4.82490 4.83269 4.95140 5.00072 5.06268 5.19150 5.23306 5.25555 5.26410 5.45622 5.46749 5.51782 5.54548 5.56189 5.61944 5.64456 5.76740 5.78611 5.83764 5.87176 5.96595 6.02311 6.04017 6.11820 6.15289 6.32696 6.46649 6.53298 6.71869 6.89000 7.13242 7.38967 7.71706 8.17544 8.43549 9.54505 10.10336 10.45433 11.47994 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017015 B = 0.001944 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.216089 B =14399.224563 C =15391.292282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.099 3.901 3 N -0.604 5.604 4 C 0.110 3.890 5 C 0.142 3.858 6 N -0.730 5.730 7 C -0.238 4.238 8 H 0.070 0.930 9 C -0.014 4.014 10 N -0.933 5.933 11 Si 0.909 3.091 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.282 1.282 15 C 0.513 3.487 16 O -0.508 6.508 17 C 0.044 3.956 18 O -0.288 6.288 19 C 0.135 3.865 20 C -0.216 4.216 21 C -0.077 4.077 22 C -0.156 4.156 23 C -0.037 4.037 24 C -0.059 4.059 25 C -0.144 4.144 26 C -0.144 4.144 27 C -0.147 4.147 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.023 0.977 36 H 0.018 0.982 37 H 0.384 0.616 38 H 0.255 0.745 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.127 0.873 42 H 0.124 0.876 43 H 0.121 0.879 44 H 0.080 0.920 45 H 0.057 0.943 46 H 0.057 0.943 47 H 0.058 0.942 48 H 0.057 0.943 49 H 0.058 0.942 50 H 0.057 0.943 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.339 -10.888 28.700 32.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.024 4.024 3 N -0.339 5.339 4 C -0.012 4.012 5 C 0.014 3.986 6 N -0.375 5.375 7 C -0.369 4.369 8 H 0.088 0.912 9 C -0.210 4.210 10 N -0.582 5.582 11 Si 0.740 3.260 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.207 1.207 15 C 0.298 3.702 16 O -0.381 6.381 17 C -0.035 4.035 18 O -0.200 6.200 19 C 0.090 3.910 20 C -0.235 4.235 21 C -0.095 4.095 22 C -0.174 4.174 23 C -0.037 4.037 24 C -0.077 4.077 25 C -0.201 4.201 26 C -0.201 4.201 27 C -0.166 4.166 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.041 0.959 36 H 0.036 0.964 37 H 0.218 0.782 38 H 0.065 0.935 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.145 0.855 42 H 0.142 0.858 43 H 0.139 0.861 44 H 0.099 0.901 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.077 0.923 48 H 0.076 0.924 49 H 0.077 0.923 50 H 0.076 0.924 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.871 -10.092 28.602 32.220 hybrid contribution 0.554 -0.296 -0.839 1.048 sum -10.317 -10.387 27.763 31.387 Atomic orbital electron populations 1.22244 0.95693 1.02414 1.02814 1.21666 0.94518 0.82492 1.03767 1.47842 1.65940 1.14288 1.05851 1.21738 0.98303 0.98496 0.82689 1.20913 0.92671 0.95560 0.89490 1.42199 1.12942 1.60828 1.21508 1.19206 0.89314 1.26105 1.02321 0.91188 1.24755 0.97889 1.00299 0.98072 1.69663 1.31618 1.37323 1.19566 0.86154 0.83646 0.76959 0.79226 1.21717 1.21704 1.20745 1.19930 0.78729 0.86983 0.84525 1.90792 1.43300 1.17300 1.86725 1.22583 1.02159 0.93335 0.85389 1.86182 1.82249 1.40169 1.11439 1.19054 0.95207 0.92394 0.84377 1.21245 1.07988 0.95530 0.98760 1.20896 0.97503 0.99371 0.91757 1.20851 1.03615 0.94117 0.98789 1.19641 0.96379 0.94365 0.93353 1.20168 0.96351 0.98274 0.92957 1.21851 0.96870 1.01990 0.99363 1.21855 0.98160 1.00659 0.99437 1.20354 1.05869 1.00743 0.89614 0.91253 0.92691 0.91641 0.89207 0.90734 0.90188 0.89549 0.95888 0.96397 0.78245 0.93486 0.89134 0.89061 0.85546 0.85802 0.86062 0.90126 0.92405 0.92410 0.92266 0.92357 0.92261 0.92409 0.85051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 10.24 37.16 0.38 -0.94 16 2 C 0.10 0.91 5.94 -4.04 -0.02 0.89 16 3 N -0.60 -8.32 2.47 -173.68 -0.43 -8.75 16 4 C 0.11 1.88 5.52 -4.04 -0.02 1.86 16 5 C 0.14 3.03 6.58 -4.04 -0.03 3.00 16 6 N -0.73 -19.23 5.60 -59.91 -0.34 -19.57 16 7 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 8 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 9 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 10 N -0.93 -28.76 13.06 55.49 0.72 -28.04 16 11 Si 0.91 22.93 29.55 -169.99 -5.02 17.90 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 13 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 14 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 15 C 0.51 7.90 7.75 -10.98 -0.09 7.81 16 16 O -0.51 -10.45 16.08 -14.35 -0.23 -10.69 16 17 C 0.04 0.49 3.77 36.01 0.14 0.63 16 18 O -0.29 -4.01 9.67 -39.32 -0.38 -4.39 16 19 C 0.14 1.58 6.69 -39.21 -0.26 1.31 16 20 C -0.22 -1.98 9.04 -39.43 -0.36 -2.34 16 21 C -0.08 -0.61 10.04 -39.61 -0.40 -1.01 16 22 C -0.16 -1.24 8.71 -39.56 -0.34 -1.58 16 23 C -0.04 -0.33 4.78 -104.64 -0.50 -0.83 16 24 C -0.06 -0.41 3.09 -91.77 -0.28 -0.70 16 25 C -0.14 -0.84 9.01 37.16 0.33 -0.51 16 26 C -0.14 -0.87 9.01 37.16 0.33 -0.54 16 27 C -0.15 -1.61 9.61 -39.43 -0.38 -1.99 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.41 7.24 -51.93 -0.38 0.03 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.83 8.07 -51.93 -0.42 0.41 16 32 H 0.07 0.51 6.43 -51.93 -0.33 0.17 16 33 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 34 H 0.09 1.66 7.42 -51.93 -0.39 1.28 16 35 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.38 10.47 7.67 -40.82 -0.31 10.16 16 38 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.09 0.76 6.72 -51.93 -0.35 0.41 16 40 H 0.09 0.81 6.93 -51.93 -0.36 0.45 16 41 H 0.13 0.89 6.30 -52.49 -0.33 0.56 16 42 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 43 H 0.12 0.74 7.09 -52.49 -0.37 0.37 16 44 H 0.08 0.57 7.87 -51.93 -0.41 0.16 16 45 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.06 0.31 7.39 -51.93 -0.38 -0.07 16 47 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 50 H 0.06 0.32 7.38 -51.93 -0.38 -0.06 16 51 H 0.13 1.42 7.94 -52.49 -0.42 1.00 16 LS Contribution 414.89 15.07 6.25 6.25 Total: -1.00 -35.72 414.89 -9.77 -45.49 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -8.60 Total: 4.30 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -1.74 Total: -2.51 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: -0.04 Total: -56.35 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.61 Total: -15.08 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.90 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -35.72 -9.77 -45.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699182697.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.610 kcal (2) G-P(sol) polarization free energy of solvation -35.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds