Wall clock time and date at job start Tue Mar 31 2020 18:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47320 * 2 1 4 4 C 1.46499 * 119.99537 * 269.99999 * 3 2 1 5 5 C 1.53002 * 109.47088 * 269.99330 * 4 3 2 6 6 N 1.46499 * 109.47479 * 179.97438 * 5 4 3 7 7 C 1.36935 * 120.00366 * 180.02562 * 6 5 4 8 8 H 1.08000 * 119.99503 * 0.02562 * 7 6 5 9 9 C 1.38811 * 120.00138 * 180.02562 * 7 6 5 10 10 N 1.31622 * 120.00038 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99761 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47258 * 90.00359 * 11 9 7 13 13 H 1.48508 * 109.46597 * 210.00178 * 11 9 7 14 14 H 1.48501 * 109.47368 * 329.99681 * 11 9 7 15 15 C 1.34777 * 120.00264 * 89.99349 * 3 2 1 16 16 O 1.21283 * 119.99750 * 180.02562 * 15 3 2 17 17 C 1.50702 * 119.99928 * 0.28128 * 15 3 2 18 18 O 1.42899 * 109.46876 * 179.72354 * 17 15 3 19 19 C 1.35897 * 116.99793 * 179.97438 * 18 17 15 20 20 C 1.38763 * 120.05702 * 359.72171 * 19 18 17 21 21 C 1.38122 * 119.94152 * 179.69745 * 20 19 18 22 22 C 1.38283 * 120.05961 * 0.60477 * 21 20 19 23 23 C 1.38244 * 120.10851 * 359.66937 * 22 21 20 24 24 C 1.50704 * 119.97370 * 180.02562 * 23 22 21 25 25 C 1.52999 * 109.47117 * 299.98575 * 24 23 22 26 26 C 1.53007 * 109.46852 * 59.97937 * 24 23 22 27 27 C 1.38168 * 120.05720 * 0.02962 * 23 22 21 28 28 H 1.08992 * 109.47180 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47106 * 300.00561 * 1 2 3 30 30 H 1.09004 * 109.46895 * 60.00075 * 1 2 3 31 31 H 1.08994 * 109.47354 * 239.99891 * 2 1 3 32 32 H 1.09001 * 109.47139 * 119.99465 * 2 1 3 33 33 H 1.09001 * 109.47567 * 29.99407 * 4 3 2 34 34 H 1.09005 * 109.47076 * 149.99913 * 4 3 2 35 35 H 1.08999 * 109.47707 * 300.00330 * 5 4 3 36 36 H 1.09005 * 109.46685 * 60.00344 * 5 4 3 37 37 H 0.97004 * 119.99938 * 0.02562 * 6 5 4 38 38 H 0.96999 * 119.99574 * 179.97438 * 10 9 7 39 39 H 1.09004 * 109.46965 * 299.72211 * 17 15 3 40 40 H 1.08994 * 109.46990 * 59.72065 * 17 15 3 41 41 H 1.07995 * 120.02466 * 359.97438 * 20 19 18 42 42 H 1.08008 * 119.97008 * 180.29705 * 21 20 19 43 43 H 1.08001 * 119.94573 * 179.69726 * 22 21 20 44 44 H 1.08995 * 109.47778 * 179.97438 * 24 23 22 45 45 H 1.09002 * 109.47154 * 299.99401 * 25 24 23 46 46 H 1.08998 * 109.47597 * 59.99519 * 25 24 23 47 47 H 1.08998 * 109.46920 * 179.97438 * 25 24 23 48 48 H 1.09005 * 109.46969 * 60.00072 * 26 24 23 49 49 H 1.08998 * 109.47317 * 180.02562 * 26 24 23 50 50 H 1.08995 * 109.47352 * 300.00780 * 26 24 23 51 51 H 1.08002 * 120.02522 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.7076 1.8314 -1.7104 6 7 3.9517 2.5213 -2.9795 7 6 5.1837 2.4483 -3.5727 8 1 5.9753 1.8817 -3.1051 9 6 5.4150 3.1025 -4.7749 10 7 4.4503 3.7935 -5.3444 11 14 7.0955 3.0022 -5.5844 12 1 7.1355 1.8329 -6.4989 13 1 7.3471 4.2446 -6.3582 14 1 8.1399 2.8497 -4.5398 15 6 2.2429 2.0167 1.1672 16 8 2.6468 3.1603 1.1671 17 6 1.9977 1.3042 2.4723 18 8 2.3121 2.1781 3.5584 19 6 2.1441 1.6866 4.8142 20 6 1.6805 0.3917 4.9974 21 6 1.5166 -0.1076 6.2748 22 6 1.8021 0.6861 7.3706 23 6 2.2587 1.9785 7.1907 24 6 2.5695 2.8406 8.3871 25 6 1.3078 3.0090 9.2359 26 6 3.6628 2.1747 9.2252 27 6 2.4303 2.4805 5.9150 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.5818 1.6876 -2.0285 34 1 2.0956 3.1410 -1.1385 35 1 4.3884 2.2155 -0.9508 36 1 3.8745 0.7621 -1.8406 37 1 3.2405 3.0300 -3.3996 38 1 4.6122 4.2509 -6.1843 39 1 0.9499 1.0100 2.5343 40 1 2.6281 0.4167 2.5258 41 1 1.4523 -0.2268 4.1420 42 1 1.1603 -1.1171 6.4179 43 1 1.6686 0.2955 8.3686 44 1 2.9145 3.8183 8.0508 45 1 0.5288 3.4834 8.6389 46 1 0.9629 2.0313 9.5724 47 1 1.5327 3.6322 10.1015 48 1 4.5617 2.0547 8.6205 49 1 3.8873 2.7980 10.0908 50 1 3.3180 1.1970 9.5616 51 1 2.7874 3.4901 5.7750 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699182697.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:31 Heat of formation + Delta-G solvation = -64.932521 kcal Electronic energy + Delta-G solvation = -28092.620004 eV Core-core repulsion = 24184.609590 eV Total energy + Delta-G solvation = -3908.010414 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.64265 -40.75716 -38.97621 -37.56093 -36.43285 -35.81130 -33.71504 -31.96481 -31.59193 -30.53169 -29.97973 -28.37759 -27.96663 -25.66706 -24.48419 -24.06367 -23.56491 -23.20185 -21.12875 -20.25467 -19.27261 -18.86608 -18.10100 -17.62842 -17.40767 -16.88784 -16.76266 -16.37652 -15.94971 -15.84277 -15.35554 -15.21984 -15.08784 -14.90875 -14.70329 -14.48015 -14.44240 -14.35876 -13.89486 -13.71344 -13.33321 -13.11266 -12.99651 -12.94276 -12.92375 -12.80691 -12.67071 -12.39142 -12.32955 -12.23867 -12.15739 -12.01249 -11.89737 -11.79273 -11.68469 -11.50913 -11.01006 -10.93767 -9.84784 -9.76828 -9.16483 -9.09430 -8.00176 -5.31213 0.37523 0.48708 1.37511 1.43313 1.45250 1.47486 1.56162 2.41361 2.55520 2.80359 3.28769 3.33273 3.73556 3.78087 3.90763 3.95867 4.01647 4.03745 4.06976 4.12921 4.18713 4.22542 4.32046 4.39039 4.40119 4.43984 4.52023 4.57614 4.60543 4.66347 4.83220 4.84866 4.92550 5.00516 5.01423 5.03647 5.05567 5.06237 5.21285 5.30448 5.35443 5.37534 5.40182 5.40308 5.48436 5.53065 5.69168 5.85559 6.21026 6.23500 6.42203 7.01354 7.27322 7.98629 8.24093 9.23084 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017015 B = 0.001944 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.216089 B =14399.224563 C =15391.292282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.090 3.910 3 N -0.597 5.597 4 C 0.124 3.876 5 C 0.148 3.852 6 N -0.743 5.743 7 C -0.252 4.252 8 H 0.073 0.927 9 C -0.074 4.074 10 N -0.967 5.967 11 Si 0.979 3.021 12 H -0.280 1.280 13 H -0.293 1.293 14 H -0.273 1.273 15 C 0.504 3.496 16 O -0.575 6.575 17 C 0.051 3.949 18 O -0.326 6.326 19 C 0.109 3.891 20 C -0.217 4.217 21 C -0.075 4.075 22 C -0.155 4.155 23 C -0.040 4.040 24 C -0.062 4.062 25 C -0.140 4.140 26 C -0.141 4.141 27 C -0.175 4.175 28 H 0.097 0.903 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.057 0.943 35 H -0.003 1.003 36 H 0.035 0.965 37 H 0.376 0.624 38 H 0.254 0.746 39 H 0.126 0.874 40 H 0.122 0.878 41 H 0.152 0.848 42 H 0.156 0.844 43 H 0.145 0.855 44 H 0.070 0.930 45 H 0.047 0.953 46 H 0.067 0.933 47 H 0.069 0.931 48 H 0.046 0.954 49 H 0.069 0.931 50 H 0.067 0.933 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.031 -14.361 30.499 35.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.031 4.031 3 N -0.331 5.331 4 C 0.000 4.000 5 C 0.021 3.979 6 N -0.386 5.386 7 C -0.384 4.384 8 H 0.091 0.909 9 C -0.266 4.266 10 N -0.617 5.617 11 Si 0.807 3.193 12 H -0.206 1.206 13 H -0.219 1.219 14 H -0.198 1.198 15 C 0.293 3.707 16 O -0.453 6.453 17 C -0.026 4.026 18 O -0.240 6.240 19 C 0.065 3.935 20 C -0.235 4.235 21 C -0.093 4.093 22 C -0.173 4.173 23 C -0.040 4.040 24 C -0.080 4.080 25 C -0.197 4.197 26 C -0.198 4.198 27 C -0.194 4.194 28 H 0.116 0.884 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.110 0.890 32 H 0.127 0.873 33 H 0.118 0.882 34 H 0.075 0.925 35 H 0.015 0.985 36 H 0.053 0.947 37 H 0.208 0.792 38 H 0.062 0.938 39 H 0.143 0.857 40 H 0.140 0.860 41 H 0.170 0.830 42 H 0.174 0.826 43 H 0.163 0.837 44 H 0.088 0.912 45 H 0.066 0.934 46 H 0.086 0.914 47 H 0.088 0.912 48 H 0.065 0.935 49 H 0.088 0.912 50 H 0.086 0.914 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.586 -13.640 30.437 35.308 hybrid contribution 0.741 0.745 -1.306 1.677 sum -10.845 -12.894 29.130 33.652 Atomic orbital electron populations 1.22214 0.94122 1.04052 1.02283 1.22083 0.95790 0.79639 1.05622 1.47930 1.65108 1.15918 1.04166 1.21344 0.96050 0.97592 0.84971 1.20960 0.94749 0.95456 0.86766 1.42385 1.12107 1.61223 1.22914 1.19591 0.90354 1.25837 1.02616 0.90885 1.25647 1.01828 1.00295 0.98854 1.69821 1.33673 1.38329 1.19883 0.85066 0.79131 0.76887 0.78194 1.20610 1.21940 1.19791 1.20820 0.77263 0.86410 0.86244 1.90759 1.46450 1.20370 1.87767 1.22670 1.04744 0.92782 0.82423 1.86125 1.83180 1.41908 1.12750 1.19297 0.96994 0.93852 0.83399 1.21533 1.07128 0.94466 1.00383 1.21318 0.96277 1.00649 0.91036 1.21193 1.02457 0.93475 1.00202 1.19858 0.96004 0.95246 0.92921 1.20218 0.97337 0.97687 0.92765 1.21828 0.95865 1.02719 0.99287 1.21835 0.97231 1.01332 0.99372 1.20478 1.07476 1.00521 0.90919 0.88434 0.92247 0.93246 0.88958 0.87331 0.88170 0.92463 0.98545 0.94709 0.79232 0.93763 0.85693 0.86029 0.83041 0.82599 0.83742 0.91157 0.93371 0.91363 0.91181 0.93503 0.91161 0.91358 0.86809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 10.24 71.98 0.74 -1.30 16 2 C 0.09 1.39 5.94 86.38 0.51 1.90 16 3 N -0.60 -16.08 2.47 -821.80 -2.03 -18.11 16 4 C 0.12 4.34 5.52 86.38 0.48 4.82 16 5 C 0.15 6.45 6.58 86.38 0.57 7.02 16 6 N -0.74 -40.15 5.60 -343.45 -1.92 -42.07 16 7 C -0.25 -14.83 9.99 84.03 0.84 -13.99 16 8 H 0.07 4.15 7.83 -2.91 -0.02 4.12 16 9 C -0.07 -4.38 5.50 84.86 0.47 -3.91 16 10 N -0.97 -60.66 13.06 21.65 0.28 -60.38 16 11 Si 0.98 47.41 29.55 68.60 2.03 49.44 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 13 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 14 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 15 C 0.50 15.70 7.75 87.66 0.68 16.38 16 16 O -0.57 -25.22 16.08 16.00 0.26 -24.96 16 17 C 0.05 1.08 3.77 71.24 0.27 1.34 16 18 O -0.33 -9.26 9.67 -73.35 -0.71 -9.97 16 19 C 0.11 2.52 6.69 22.51 0.15 2.67 16 20 C -0.22 -3.39 9.04 22.37 0.20 -3.19 16 21 C -0.08 -0.93 10.04 22.25 0.22 -0.70 16 22 C -0.16 -2.08 8.71 22.28 0.19 -1.88 16 23 C -0.04 -0.69 4.78 -19.88 -0.10 -0.79 16 24 C -0.06 -0.83 3.09 -11.54 -0.04 -0.87 16 25 C -0.14 -1.47 9.01 71.98 0.65 -0.82 16 26 C -0.14 -1.53 9.01 71.98 0.65 -0.88 16 27 C -0.18 -4.02 9.61 22.36 0.21 -3.80 16 28 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.68 7.24 -2.39 -0.02 0.66 16 30 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.09 1.44 8.07 -2.39 -0.02 1.42 16 32 H 0.11 0.98 6.43 -2.39 -0.02 0.96 16 33 H 0.10 3.09 8.07 -2.39 -0.02 3.07 16 34 H 0.06 2.35 7.42 -2.38 -0.02 2.33 16 35 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 36 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 37 H 0.38 21.22 7.67 -92.71 -0.71 20.51 16 38 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 39 H 0.13 1.70 6.72 -2.38 -0.02 1.69 16 40 H 0.12 1.76 6.93 -2.39 -0.02 1.74 16 41 H 0.15 1.47 6.30 -2.91 -0.02 1.45 16 42 H 0.16 0.92 8.06 -2.91 -0.02 0.90 16 43 H 0.14 1.23 7.09 -2.91 -0.02 1.21 16 44 H 0.07 1.06 7.87 -2.39 -0.02 1.04 16 45 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.07 0.57 7.39 -2.39 -0.02 0.55 16 47 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 48 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 49 H 0.07 0.60 8.14 -2.39 -0.02 0.59 16 50 H 0.07 0.59 7.38 -2.39 -0.02 0.58 16 51 H 0.11 2.83 7.94 -2.91 -0.02 2.80 16 Total: -1.00 -82.14 414.89 4.80 -77.33 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: 0.20 Total: 26.73 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: 6.70 Total: 2.00 kcal Atomic # 7 Polarization: -116.89 SS G_CDS: -3.67 Total: -120.56 kcal Atomic # 8 Polarization: -34.48 SS G_CDS: -0.45 Total: -34.93 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.44 kcal Total: -82.14 4.80 -77.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699182697.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.401 kcal (2) G-P(sol) polarization free energy of solvation -82.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds