Wall clock time and date at job start Tue Mar 31 2020 18:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46510 * 109.47149 * 2 1 4 4 C 1.46491 * 120.00116 * 270.00224 * 3 2 1 5 5 C 1.53000 * 109.47356 * 269.99645 * 4 3 2 6 6 N 1.46491 * 109.47356 * 179.97438 * 5 4 3 7 7 C 1.36945 * 119.99951 * 179.97438 * 6 5 4 8 8 H 1.07994 * 120.00066 * 359.97438 * 7 6 5 9 9 C 1.38809 * 119.99787 * 180.02562 * 7 6 5 10 10 N 1.31619 * 120.00279 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99874 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47281 * 89.99779 * 11 9 7 13 13 H 1.48497 * 109.47114 * 209.99867 * 11 9 7 14 14 H 1.48501 * 109.47028 * 329.99953 * 11 9 7 15 15 C 1.34779 * 119.99432 * 89.99523 * 3 2 1 16 16 O 1.21280 * 119.99417 * 180.02562 * 15 3 2 17 17 C 1.50697 * 120.00282 * 0.02562 * 15 3 2 18 18 O 1.42903 * 109.47103 * 179.97438 * 17 15 3 19 19 C 1.35899 * 116.99930 * 180.02562 * 18 17 15 20 20 C 1.38747 * 120.05586 * 359.97438 * 19 18 17 21 21 C 1.38125 * 119.94590 * 180.02562 * 20 19 18 22 22 C 1.38289 * 120.05159 * 359.97438 * 21 20 19 23 23 C 1.38243 * 120.11362 * 0.02562 * 22 21 20 24 24 C 1.38163 * 120.05438 * 359.97438 * 23 22 21 25 25 C 1.50707 * 120.02715 * 180.02562 * 24 23 22 26 26 C 1.52997 * 109.47177 * 299.98059 * 25 24 23 27 27 C 1.53005 * 109.46943 * 59.98362 * 25 24 23 28 28 H 1.09003 * 109.46386 * 179.97438 * 1 2 3 29 29 H 1.08985 * 109.47207 * 299.99718 * 1 2 3 30 30 H 1.08997 * 109.46877 * 60.00347 * 1 2 3 31 31 H 1.08997 * 109.47595 * 240.00542 * 2 1 3 32 32 H 1.08993 * 109.47547 * 119.99911 * 2 1 3 33 33 H 1.08999 * 109.47260 * 29.99515 * 4 3 2 34 34 H 1.09001 * 109.47275 * 149.99511 * 4 3 2 35 35 H 1.08999 * 109.46830 * 300.00133 * 5 4 3 36 36 H 1.09001 * 109.47038 * 59.99721 * 5 4 3 37 37 H 0.97002 * 120.00209 * 0.02562 * 6 5 4 38 38 H 0.97007 * 119.99991 * 180.02562 * 10 9 7 39 39 H 1.08998 * 109.47303 * 59.99588 * 17 15 3 40 40 H 1.08995 * 109.46897 * 299.99667 * 17 15 3 41 41 H 1.08000 * 120.03046 * 0.02562 * 20 19 18 42 42 H 1.07993 * 119.97844 * 179.72247 * 21 20 19 43 43 H 1.08004 * 119.94567 * 179.97438 * 22 21 20 44 44 H 1.08001 * 119.97538 * 179.97438 * 23 22 21 45 45 H 1.09004 * 109.46886 * 179.97438 * 25 24 23 46 46 H 1.09004 * 109.47289 * 60.00153 * 26 25 24 47 47 H 1.09003 * 109.47159 * 179.97438 * 26 25 24 48 48 H 1.08998 * 109.47534 * 299.99939 * 26 25 24 49 49 H 1.08992 * 109.47221 * 59.99940 * 27 25 24 50 50 H 1.08994 * 109.46746 * 180.02562 * 27 25 24 51 51 H 1.09002 * 109.46743 * 300.00003 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.7075 1.8316 -1.7104 6 7 3.9514 2.5217 -2.9793 7 6 5.1838 2.4496 -3.5721 8 1 5.9760 1.8843 -3.1039 9 6 5.4151 3.1039 -4.7742 10 7 4.4498 3.7933 -5.3446 11 14 7.0960 3.0050 -5.5832 12 1 7.1372 1.8355 -6.4976 13 1 7.3468 4.2474 -6.3569 14 1 8.1401 2.8532 -4.5382 15 6 2.2429 2.0166 1.1673 16 8 2.6467 3.1602 1.1673 17 6 1.9921 1.3060 2.4723 18 8 2.3020 2.1813 3.5585 19 6 2.1298 1.6912 4.8143 20 6 1.6714 0.3945 4.9974 21 6 1.4967 -0.1012 6.2747 22 6 1.7787 0.6937 7.3706 23 6 2.2356 1.9860 7.1909 24 6 2.4120 2.4864 5.9152 25 6 2.9106 3.8952 5.7200 26 6 1.9331 4.8768 6.3693 27 6 4.2884 4.0430 6.3688 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.5817 1.6878 -2.0283 34 1 2.0954 3.1411 -1.1383 35 1 4.3882 2.2157 -0.9507 36 1 3.8745 0.7624 -1.8407 37 1 3.2402 3.0304 -3.3993 38 1 4.6114 4.2503 -6.1849 39 1 2.6226 0.4187 2.5299 40 1 0.9443 1.0115 2.5301 41 1 1.4514 -0.2268 4.1418 42 1 1.1356 -1.1089 6.4178 43 1 1.6411 0.3045 8.3686 44 1 2.4548 2.6050 8.0483 45 1 2.9863 4.1093 4.6539 46 1 1.8575 4.6626 7.4354 47 1 2.2940 5.8956 6.2285 48 1 0.9516 4.7715 5.9071 49 1 4.9848 3.3437 5.9061 50 1 4.6488 5.0619 6.2280 51 1 4.2128 3.8287 7.4349 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699216548.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:34 Heat of formation + Delta-G solvation = -63.478310 kcal Electronic energy + Delta-G solvation = -28757.192478 eV Core-core repulsion = 24849.245123 eV Total energy + Delta-G solvation = -3907.947355 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.68545 -40.78899 -38.55946 -37.51701 -36.43532 -36.25008 -33.71309 -31.67321 -31.26994 -30.99039 -29.92436 -28.32614 -28.01361 -25.66447 -24.57309 -24.25430 -23.48322 -22.82503 -21.11621 -20.22493 -19.36848 -19.10181 -18.12719 -17.61987 -17.43612 -16.90377 -16.48777 -16.43860 -15.94424 -15.42776 -15.39636 -15.19998 -15.10255 -14.94031 -14.79795 -14.70844 -14.48556 -14.30908 -13.78203 -13.63623 -13.32788 -13.11113 -13.00381 -12.94036 -12.89305 -12.81498 -12.66709 -12.54307 -12.36194 -12.21290 -12.15878 -12.06273 -11.90750 -11.87951 -11.54206 -11.47798 -11.00926 -10.91875 -9.84333 -9.74302 -9.09627 -9.08697 -8.00272 -5.31368 0.41636 0.51467 1.39141 1.43865 1.45573 1.47387 1.56108 2.43577 2.55986 2.84479 3.29680 3.33326 3.69565 3.80797 3.89125 3.95603 4.01965 4.06767 4.11615 4.16112 4.18194 4.26003 4.30402 4.34251 4.39647 4.51739 4.52784 4.56778 4.58113 4.74184 4.77145 4.84749 4.89129 4.92414 4.94759 5.03154 5.05904 5.11418 5.20444 5.28680 5.35693 5.36562 5.40031 5.47436 5.48407 5.61026 5.65729 5.88264 6.21025 6.24322 6.44101 7.02156 7.27251 7.98448 8.23914 9.23057 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014184 B = 0.002330 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.643350 B =12015.469339 C =13164.221444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.090 3.910 3 N -0.598 5.598 4 C 0.125 3.875 5 C 0.149 3.851 6 N -0.743 5.743 7 C -0.252 4.252 8 H 0.073 0.927 9 C -0.073 4.073 10 N -0.967 5.967 11 Si 0.979 3.021 12 H -0.280 1.280 13 H -0.293 1.293 14 H -0.273 1.273 15 C 0.505 3.495 16 O -0.573 6.573 17 C 0.051 3.949 18 O -0.320 6.320 19 C 0.101 3.899 20 C -0.211 4.211 21 C -0.087 4.087 22 C -0.156 4.156 23 C -0.083 4.083 24 C -0.121 4.121 25 C -0.059 4.059 26 C -0.135 4.135 27 C -0.137 4.137 28 H 0.097 0.903 29 H 0.058 0.942 30 H 0.049 0.951 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.099 0.901 34 H 0.057 0.943 35 H -0.004 1.004 36 H 0.034 0.966 37 H 0.376 0.624 38 H 0.254 0.746 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.149 0.851 42 H 0.152 0.848 43 H 0.148 0.852 44 H 0.144 0.856 45 H 0.051 0.949 46 H 0.074 0.926 47 H 0.059 0.941 48 H 0.043 0.957 49 H 0.041 0.959 50 H 0.059 0.941 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.513 -12.675 28.653 33.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.031 4.031 3 N -0.332 5.332 4 C 0.001 3.999 5 C 0.021 3.979 6 N -0.386 5.386 7 C -0.383 4.383 8 H 0.091 0.909 9 C -0.266 4.266 10 N -0.618 5.618 11 Si 0.807 3.193 12 H -0.206 1.206 13 H -0.219 1.219 14 H -0.198 1.198 15 C 0.293 3.707 16 O -0.451 6.451 17 C -0.027 4.027 18 O -0.233 6.233 19 C 0.056 3.944 20 C -0.229 4.229 21 C -0.105 4.105 22 C -0.174 4.174 23 C -0.101 4.101 24 C -0.122 4.122 25 C -0.078 4.078 26 C -0.192 4.192 27 C -0.194 4.194 28 H 0.115 0.885 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.110 0.890 32 H 0.126 0.874 33 H 0.118 0.882 34 H 0.075 0.925 35 H 0.014 0.986 36 H 0.052 0.948 37 H 0.208 0.792 38 H 0.063 0.937 39 H 0.137 0.863 40 H 0.141 0.859 41 H 0.167 0.833 42 H 0.170 0.830 43 H 0.166 0.834 44 H 0.162 0.838 45 H 0.070 0.930 46 H 0.093 0.907 47 H 0.078 0.922 48 H 0.063 0.937 49 H 0.060 0.940 50 H 0.078 0.922 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.066 -11.951 28.586 32.900 hybrid contribution 0.676 0.524 -1.323 1.575 sum -10.390 -11.427 27.263 31.334 Atomic orbital electron populations 1.22209 0.94137 1.04027 1.02264 1.22069 0.95775 0.79702 1.05548 1.47926 1.65162 1.15897 1.04197 1.21330 0.96018 0.97571 0.84962 1.20951 0.94756 0.95411 0.86759 1.42389 1.12094 1.61216 1.22941 1.19580 0.90284 1.25846 1.02605 0.90928 1.25643 1.01812 1.00290 0.98849 1.69820 1.33661 1.38423 1.19851 0.85074 0.79148 0.76901 0.78209 1.20608 1.21920 1.19777 1.20794 0.77279 0.86411 0.86182 1.90757 1.46364 1.20253 1.87736 1.22643 1.04551 0.92824 0.82673 1.86125 1.83204 1.41458 1.12552 1.19208 0.97944 0.93712 0.83529 1.21521 1.06673 0.94389 1.00342 1.21304 0.97184 1.00761 0.91221 1.21420 1.01693 0.94075 1.00246 1.21065 0.97468 0.96279 0.95292 1.19433 1.04696 0.96329 0.91711 1.19967 0.96208 0.91511 1.00084 1.21790 0.98013 0.98345 1.01098 1.21800 0.94870 1.01586 1.01124 0.88469 0.92286 0.93224 0.88991 0.87441 0.88243 0.92458 0.98557 0.94780 0.79235 0.93743 0.86315 0.85943 0.83333 0.83012 0.83407 0.83801 0.93002 0.90746 0.92173 0.93737 0.93990 0.92178 0.90698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 10.24 71.98 0.74 -1.34 16 2 C 0.09 1.42 5.93 86.38 0.51 1.93 16 3 N -0.60 -16.14 2.47 -821.83 -2.03 -18.17 16 4 C 0.12 4.37 5.52 86.38 0.48 4.84 16 5 C 0.15 6.48 6.58 86.38 0.57 7.05 16 6 N -0.74 -40.16 5.60 -343.47 -1.92 -42.08 16 7 C -0.25 -14.77 9.99 84.03 0.84 -13.93 16 8 H 0.07 4.13 7.83 -2.91 -0.02 4.10 16 9 C -0.07 -4.36 5.50 84.86 0.47 -3.90 16 10 N -0.97 -60.70 13.06 21.65 0.28 -60.41 16 11 Si 0.98 47.37 29.55 68.60 2.03 49.40 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 13 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 14 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 15 C 0.51 15.67 7.75 87.66 0.68 16.35 16 16 O -0.57 -24.90 16.08 16.01 0.26 -24.64 16 17 C 0.05 1.07 3.77 71.24 0.27 1.34 16 18 O -0.32 -8.92 8.44 -73.37 -0.62 -9.54 16 19 C 0.10 2.28 6.66 22.50 0.15 2.43 16 20 C -0.21 -3.32 9.04 22.36 0.20 -3.12 16 21 C -0.09 -1.08 10.04 22.25 0.22 -0.85 16 22 C -0.16 -1.96 10.04 22.28 0.22 -1.74 16 23 C -0.08 -1.30 8.71 22.25 0.19 -1.10 16 24 C -0.12 -2.59 4.79 -19.77 -0.09 -2.68 16 25 C -0.06 -1.34 3.06 -11.54 -0.04 -1.37 16 26 C -0.14 -2.50 9.01 71.98 0.65 -1.85 16 27 C -0.14 -2.62 9.01 71.98 0.65 -1.97 16 28 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.06 0.69 7.22 -2.39 -0.02 0.68 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.09 1.45 8.07 -2.39 -0.02 1.44 16 32 H 0.11 1.01 6.44 -2.39 -0.02 1.00 16 33 H 0.10 3.07 8.07 -2.39 -0.02 3.06 16 34 H 0.06 2.35 7.42 -2.39 -0.02 2.33 16 35 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 36 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.38 21.22 7.67 -92.71 -0.71 20.51 16 38 H 0.25 15.31 8.31 -92.70 -0.77 14.54 16 39 H 0.12 1.77 6.92 -2.39 -0.02 1.75 16 40 H 0.12 1.72 6.71 -2.39 -0.02 1.70 16 41 H 0.15 1.52 6.30 -2.91 -0.02 1.50 16 42 H 0.15 0.97 8.06 -2.91 -0.02 0.95 16 43 H 0.15 1.04 8.06 -2.91 -0.02 1.02 16 44 H 0.14 1.62 7.10 -2.91 -0.02 1.60 16 45 H 0.05 1.57 6.99 -2.38 -0.02 1.55 16 46 H 0.07 1.03 7.39 -2.38 -0.02 1.02 16 47 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.04 0.89 8.14 -2.39 -0.02 0.88 16 49 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 50 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 51 H 0.07 1.08 7.39 -2.39 -0.02 1.07 16 Total: -1.00 -81.68 413.25 4.90 -76.77 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: 0.20 Total: 28.58 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: 6.71 Total: 0.08 kcal Atomic # 7 Polarization: -116.99 SS G_CDS: -3.67 Total: -120.66 kcal Atomic # 8 Polarization: -33.82 SS G_CDS: -0.36 Total: -34.18 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.40 kcal Total: -81.68 4.90 -76.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699216548.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.295 kcal (2) G-P(sol) polarization free energy of solvation -81.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds