Wall clock time and date at job start Tue Mar 31 2020 18:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46496 * 109.47362 * 2 1 4 4 C 1.46498 * 119.99599 * 275.72372 * 3 2 1 5 5 C 1.53000 * 109.47327 * 270.00121 * 4 3 2 6 6 N 1.46503 * 109.46871 * 180.02562 * 5 4 3 7 7 C 1.36945 * 119.99696 * 179.97438 * 6 5 4 8 8 H 1.08004 * 119.99628 * 0.02562 * 7 6 5 9 9 C 1.38806 * 119.99612 * 179.97438 * 7 6 5 10 10 N 1.31624 * 119.99661 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 120.00482 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.47363 * 89.99944 * 11 9 7 13 13 H 1.48499 * 109.47151 * 210.00053 * 11 9 7 14 14 H 1.48498 * 109.46966 * 329.99812 * 11 9 7 15 15 C 1.34772 * 120.00083 * 95.72791 * 3 2 1 16 16 O 1.21289 * 119.99764 * 185.84071 * 15 3 2 17 17 C 1.50697 * 120.00173 * 5.83660 * 15 3 2 18 18 C 1.52999 * 109.46933 * 300.04749 * 17 15 3 19 19 C 1.53007 * 109.47108 * 180.02562 * 17 15 3 20 20 C 1.50698 * 109.47482 * 60.04937 * 17 15 3 21 21 C 1.38168 * 120.02344 * 5.88588 * 20 17 15 22 22 C 1.38242 * 120.05392 * 179.74286 * 21 20 17 23 23 C 1.38282 * 120.11368 * 0.27595 * 22 21 20 24 24 C 1.38126 * 120.05586 * 0.02562 * 23 22 21 25 25 C 1.38704 * 120.03106 * 186.16027 * 20 17 15 26 26 O 1.35901 * 120.05890 * 359.97438 * 25 20 17 27 27 C 1.42902 * 117.00147 * 180.25213 * 26 25 20 28 28 H 1.09005 * 109.47069 * 307.66412 * 1 2 3 29 29 H 1.09004 * 109.46848 * 67.66032 * 1 2 3 30 30 H 1.08996 * 109.47447 * 187.66248 * 1 2 3 31 31 H 1.08998 * 109.46684 * 239.99201 * 2 1 3 32 32 H 1.09002 * 109.46350 * 120.00025 * 2 1 3 33 33 H 1.09004 * 109.47511 * 30.00763 * 4 3 2 34 34 H 1.09008 * 109.46588 * 149.99964 * 4 3 2 35 35 H 1.09003 * 109.46835 * 300.00176 * 5 4 3 36 36 H 1.08994 * 109.46985 * 59.99994 * 5 4 3 37 37 H 0.96994 * 120.00495 * 0.02562 * 6 5 4 38 38 H 0.96994 * 120.00355 * 180.02562 * 10 9 7 39 39 H 1.09011 * 109.47155 * 194.84340 * 18 17 15 40 40 H 1.08993 * 109.47559 * 314.84451 * 18 17 15 41 41 H 1.08999 * 109.47057 * 74.84827 * 18 17 15 42 42 H 1.08999 * 109.46780 * 294.26794 * 19 17 15 43 43 H 1.08996 * 109.47334 * 54.26901 * 19 17 15 44 44 H 1.09000 * 109.47040 * 174.27185 * 19 17 15 45 45 H 1.08000 * 119.97650 * 0.02562 * 21 20 17 46 46 H 1.08004 * 119.94555 * 180.25868 * 22 21 20 47 47 H 1.07998 * 119.97687 * 179.97438 * 23 22 21 48 48 H 1.07999 * 120.03123 * 180.02562 * 24 23 22 49 49 H 1.09000 * 109.46754 * 179.97438 * 27 26 25 50 50 H 1.09000 * 109.47009 * 300.00180 * 27 26 25 51 51 H 1.09005 * 109.46826 * 60.00403 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1433 2.1139 -1.2624 5 6 3.5399 1.8904 -1.8458 6 7 3.6649 2.6237 -3.1080 7 6 4.8360 2.5732 -3.8161 8 1 5.6673 1.9926 -3.4441 9 6 4.9542 3.2675 -5.0122 10 7 6.0796 3.2187 -5.6930 11 14 3.5162 4.2712 -5.6557 12 1 3.6051 5.6571 -5.1297 13 1 3.5584 4.3014 -7.1398 14 1 2.2420 3.6531 -5.2092 15 6 2.3529 1.9777 1.1613 16 8 2.6556 3.1521 1.1746 17 6 2.3506 1.1855 2.4433 18 6 0.9463 0.6354 2.7004 19 6 2.7639 2.0927 3.6041 20 6 3.3251 0.0417 2.3288 21 6 4.1353 -0.0674 1.2150 22 6 5.0332 -1.1135 1.1117 23 6 5.1189 -2.0562 2.1197 24 6 4.3068 -1.9551 3.2324 25 6 3.4054 -0.9056 3.3388 26 8 2.6060 -0.8033 4.4331 27 6 2.7468 -1.8115 5.4360 28 1 -0.3633 0.6280 0.8135 29 1 -0.3633 0.3906 -0.9506 30 1 -0.3634 -1.0184 0.1370 31 1 1.8933 -0.5140 -0.8899 32 1 1.8932 -0.5139 0.8900 33 1 1.3933 1.7542 -1.9670 34 1 1.9910 3.1780 -1.0815 35 1 4.2898 2.2502 -1.1412 36 1 3.6921 0.8264 -2.0267 37 1 2.9185 3.1454 -3.4418 38 1 6.1625 3.7041 -6.5286 39 1 0.8728 0.2951 3.7334 40 1 0.2107 1.4198 2.5230 41 1 0.7550 -0.2009 2.0279 42 1 3.8005 2.4026 3.4716 43 1 2.1212 2.9728 3.6241 44 1 2.6645 1.5488 4.5434 45 1 4.0704 0.6677 0.4264 46 1 5.6686 -1.1947 0.2422 47 1 5.8209 -2.8728 2.0366 48 1 4.3744 -2.6914 4.0196 49 1 2.0529 -1.6113 6.2523 50 1 2.5275 -2.7876 5.0032 51 1 3.7679 -1.8043 5.8175 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699221130.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:10 Heat of formation + Delta-G solvation = -33.531147 kcal Electronic energy + Delta-G solvation = -30945.513901 eV Core-core repulsion = 27038.865153 eV Total energy + Delta-G solvation = -3906.648748 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.45558 -40.63566 -38.29449 -37.75788 -36.83474 -35.98731 -33.73611 -32.02306 -31.33329 -30.65120 -29.75458 -28.13342 -28.01592 -25.94698 -24.55158 -24.17869 -23.69626 -22.80035 -22.06850 -20.05172 -19.48043 -19.05171 -17.99978 -17.64491 -17.18923 -16.59948 -16.51734 -16.31092 -16.23673 -15.60406 -15.52746 -15.44407 -15.13150 -14.93941 -14.79163 -14.42945 -14.39113 -14.09428 -13.67099 -13.50200 -13.37885 -13.27109 -13.14997 -13.00992 -12.87585 -12.83898 -12.58903 -12.51871 -12.32930 -12.28171 -12.11743 -12.01529 -11.87071 -11.84481 -11.76253 -11.53078 -11.04808 -10.72889 -9.80602 -9.70932 -9.39820 -9.09224 -8.07322 -5.43284 0.29446 0.46591 1.35212 1.40543 1.46830 1.51669 1.89417 2.40144 2.45199 2.75257 3.23564 3.31860 3.52461 3.67462 3.92936 3.98851 4.02224 4.08935 4.09941 4.10774 4.18100 4.32592 4.38981 4.47556 4.48060 4.52748 4.54247 4.54484 4.69815 4.72481 4.80840 4.84722 4.85875 4.88191 4.89768 4.99358 4.99910 5.05043 5.06294 5.19924 5.25383 5.36355 5.44766 5.48454 5.51335 5.62024 5.68889 5.81055 6.15369 6.35248 6.48689 7.00351 7.09989 7.73689 7.95246 9.13983 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016693 B = 0.003324 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.967091 B = 8420.335756 C = 9122.218692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.084 3.916 3 N -0.598 5.598 4 C 0.113 3.887 5 C 0.153 3.847 6 N -0.754 5.754 7 C -0.241 4.241 8 H 0.053 0.947 9 C -0.061 4.061 10 N -0.982 5.982 11 Si 0.958 3.042 12 H -0.282 1.282 13 H -0.290 1.290 14 H -0.246 1.246 15 C 0.519 3.481 16 O -0.580 6.580 17 C -0.021 4.021 18 C -0.146 4.146 19 C -0.118 4.118 20 C -0.119 4.119 21 C -0.101 4.101 22 C -0.164 4.164 23 C -0.076 4.076 24 C -0.202 4.202 25 C 0.141 3.859 26 O -0.316 6.316 27 C 0.014 3.986 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.068 0.932 35 H 0.002 0.998 36 H 0.033 0.967 37 H 0.368 0.632 38 H 0.260 0.740 39 H 0.093 0.907 40 H 0.058 0.942 41 H 0.087 0.913 42 H 0.035 0.965 43 H 0.056 0.944 44 H 0.090 0.910 45 H 0.109 0.891 46 H 0.121 0.879 47 H 0.150 0.850 48 H 0.159 0.841 49 H 0.118 0.882 50 H 0.068 0.932 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.984 -16.847 25.728 33.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.037 4.037 3 N -0.330 5.330 4 C -0.010 4.010 5 C 0.025 3.975 6 N -0.400 5.400 7 C -0.371 4.371 8 H 0.071 0.929 9 C -0.252 4.252 10 N -0.631 5.631 11 Si 0.784 3.216 12 H -0.208 1.208 13 H -0.216 1.216 14 H -0.170 1.170 15 C 0.308 3.692 16 O -0.459 6.459 17 C -0.025 4.025 18 C -0.203 4.203 19 C -0.176 4.176 20 C -0.120 4.120 21 C -0.119 4.119 22 C -0.183 4.183 23 C -0.093 4.093 24 C -0.220 4.220 25 C 0.096 3.904 26 O -0.229 6.229 27 C -0.080 4.080 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.110 0.890 31 H 0.097 0.903 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.086 0.914 35 H 0.020 0.980 36 H 0.051 0.949 37 H 0.202 0.798 38 H 0.069 0.931 39 H 0.112 0.888 40 H 0.077 0.923 41 H 0.106 0.894 42 H 0.054 0.946 43 H 0.075 0.925 44 H 0.109 0.891 45 H 0.126 0.874 46 H 0.139 0.861 47 H 0.168 0.832 48 H 0.177 0.823 49 H 0.136 0.864 50 H 0.087 0.913 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.785 -16.181 25.756 33.395 hybrid contribution 0.301 0.948 -1.151 1.521 sum -13.484 -15.234 24.605 31.926 Atomic orbital electron populations 1.22414 0.93968 1.03900 1.02834 1.22278 0.95910 0.80814 1.04714 1.47933 1.64588 1.15269 1.05206 1.21438 0.96542 0.97659 0.85390 1.20932 0.95566 0.94967 0.85996 1.42505 1.13807 1.59844 1.23848 1.18965 0.91512 1.24839 1.01823 0.92921 1.25545 1.00091 1.01889 0.97710 1.69885 1.27534 1.48241 1.17489 0.85368 0.80169 0.78820 0.77208 1.20784 1.21589 1.17020 1.21135 0.74983 0.87056 0.86032 1.90685 1.49721 1.18372 1.87123 1.19551 0.97773 0.93196 0.91937 1.22436 0.91208 1.01471 1.05175 1.21626 1.00518 0.98520 0.96904 1.18762 1.01255 0.96899 0.95065 1.21222 0.95310 0.98464 0.96915 1.21191 1.00151 0.96096 1.00832 1.21256 0.97736 0.98153 0.92193 1.21520 0.99073 1.00050 1.01370 1.18618 0.91201 0.93613 0.87014 1.86125 1.57564 1.51149 1.28068 1.23377 1.03671 0.90970 0.90002 0.91449 0.92605 0.89039 0.90282 0.87767 0.88115 0.91359 0.98001 0.94861 0.79834 0.93101 0.88818 0.92327 0.89419 0.94550 0.92533 0.89109 0.87358 0.86109 0.83248 0.82316 0.86411 0.91321 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.74 8.91 71.98 0.64 -2.10 16 2 C 0.08 1.76 4.38 86.38 0.38 2.14 16 3 N -0.60 -17.06 1.46 -821.81 -1.20 -18.27 16 4 C 0.11 3.81 5.59 86.38 0.48 4.29 16 5 C 0.15 6.45 5.71 86.38 0.49 6.95 16 6 N -0.75 -37.76 5.41 -343.44 -1.86 -39.61 16 7 C -0.24 -14.51 10.47 84.03 0.88 -13.63 16 8 H 0.05 3.49 8.06 -2.91 -0.02 3.46 16 9 C -0.06 -3.71 5.50 84.86 0.47 -3.24 16 10 N -0.98 -64.65 13.97 21.65 0.30 -64.35 16 11 Si 0.96 46.79 27.74 68.60 1.90 48.69 16 12 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 13 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 14 H -0.25 -10.66 6.52 99.48 0.65 -10.01 16 15 C 0.52 16.53 5.11 87.66 0.45 16.98 16 16 O -0.58 -23.87 15.46 -3.06 -0.05 -23.91 16 17 C -0.02 -0.52 0.48 -53.67 -0.03 -0.55 16 18 C -0.15 -2.58 6.26 71.98 0.45 -2.13 16 19 C -0.12 -2.94 7.59 71.98 0.55 -2.39 16 20 C -0.12 -2.76 3.13 -19.77 -0.06 -2.82 16 21 C -0.10 -2.72 7.30 22.25 0.16 -2.56 16 22 C -0.16 -3.86 10.04 22.28 0.22 -3.63 16 23 C -0.08 -1.30 10.04 22.25 0.22 -1.08 16 24 C -0.20 -3.01 9.04 22.37 0.20 -2.81 16 25 C 0.14 2.54 6.30 22.51 0.14 2.68 16 26 O -0.32 -4.39 6.48 -92.43 -0.60 -4.99 16 27 C 0.01 0.08 9.81 113.37 1.11 1.20 16 28 H 0.07 1.07 5.63 -2.38 -0.01 1.06 16 29 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.08 1.67 8.11 -2.39 -0.02 1.65 16 32 H 0.10 2.05 3.10 -2.39 -0.01 2.04 16 33 H 0.10 2.89 8.07 -2.38 -0.02 2.88 16 34 H 0.07 2.55 7.35 -2.38 -0.02 2.54 16 35 H 0.00 0.09 7.79 -2.39 -0.02 0.07 16 36 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.37 17.30 5.53 -92.71 -0.51 16.79 16 38 H 0.26 16.20 8.31 -92.71 -0.77 15.43 16 39 H 0.09 1.40 6.20 -2.38 -0.01 1.38 16 40 H 0.06 1.06 7.33 -2.39 -0.02 1.04 16 41 H 0.09 1.34 3.85 -2.39 -0.01 1.33 16 42 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.06 1.47 7.93 -2.39 -0.02 1.45 16 44 H 0.09 1.80 6.70 -2.39 -0.02 1.79 16 45 H 0.11 3.57 4.38 -2.91 -0.01 3.56 16 46 H 0.12 2.88 8.06 -2.91 -0.02 2.86 16 47 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 48 H 0.16 1.33 6.30 -2.91 -0.02 1.31 16 49 H 0.12 0.28 8.14 -2.39 -0.02 0.26 16 50 H 0.07 0.25 7.66 -2.39 -0.02 0.24 16 51 H 0.06 0.31 7.66 -2.38 -0.02 0.29 16 Total: -1.00 -79.60 383.72 5.64 -73.96 By element: Atomic # 1 Polarization: 30.79 SS G_CDS: 0.37 Total: 31.16 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: 6.77 Total: -2.69 kcal Atomic # 7 Polarization: -119.47 SS G_CDS: -2.76 Total: -122.23 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -0.65 Total: -28.90 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 1.90 Total: 48.69 kcal Total: -79.60 5.64 -73.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699221130.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.433 kcal (2) G-P(sol) polarization free energy of solvation -79.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds