Wall clock time and date at job start Tue Mar 31 2020 19:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47069 * 214.45207 * 3 2 1 5 5 C 1.34781 * 120.00024 * 270.00255 * 4 3 2 6 6 O 1.21280 * 120.00073 * 180.02562 * 5 4 3 7 7 C 1.50698 * 119.99632 * 359.97438 * 5 4 3 8 8 C 1.53776 * 113.61919 * 277.49921 * 7 5 4 9 9 C 1.53784 * 87.08332 * 220.02253 * 8 7 5 10 10 O 1.42896 * 113.61475 * 139.98098 * 9 8 7 11 11 C 1.42898 * 114.00002 * 112.50332 * 10 9 8 12 12 C 1.52998 * 109.47002 * 179.97438 * 11 10 9 13 13 C 1.53781 * 87.07967 * 25.43168 * 9 8 7 14 14 C 1.46500 * 119.99915 * 90.00020 * 4 3 2 15 15 C 1.53070 * 109.45300 * 299.78984 * 14 4 3 16 16 C 1.53192 * 109.29486 * 181.24657 * 15 14 4 17 17 N 1.46923 * 108.89086 * 305.57609 * 16 15 14 18 18 C 1.36938 * 120.62890 * 233.55909 * 17 16 15 19 19 H 1.08011 * 119.99821 * 151.82869 * 18 17 16 20 20 C 1.38810 * 120.00150 * 331.82504 * 18 17 16 21 21 N 1.31613 * 120.00273 * 343.07447 * 20 18 17 22 22 Si 1.86803 * 119.99828 * 163.06738 * 20 18 17 23 23 H 1.48503 * 109.47179 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.47229 * 120.00279 * 22 20 18 25 25 H 1.48502 * 109.47136 * 240.00365 * 22 20 18 26 26 C 1.46928 * 118.73969 * 53.53853 * 17 16 15 27 27 C 1.53041 * 109.46255 * 60.00336 * 14 4 3 28 28 H 4.40638 * 5.51367 * 180.02562 * 4 1 2 29 29 H 1.09001 * 109.47520 * 94.45295 * 3 2 1 30 30 H 1.09007 * 109.47345 * 334.45130 * 3 2 1 31 31 H 1.08999 * 112.84931 * 48.81115 * 7 5 4 32 32 H 1.08995 * 113.61316 * 334.57160 * 8 7 5 33 33 H 1.09001 * 113.61559 * 105.47063 * 8 7 5 34 34 H 1.09004 * 113.61013 * 270.88653 * 9 8 7 35 35 H 1.08997 * 109.47273 * 300.00153 * 11 10 9 36 36 H 1.08997 * 109.46981 * 60.00036 * 11 10 9 37 37 H 1.09011 * 109.47026 * 180.02562 * 12 11 10 38 38 H 1.09002 * 109.47250 * 299.99716 * 12 11 10 39 39 H 1.08997 * 109.47205 * 60.00195 * 12 11 10 40 40 H 1.08998 * 113.61334 * 220.02082 * 13 9 8 41 41 H 1.08996 * 113.61370 * 89.11885 * 13 9 8 42 42 H 1.09003 * 109.45820 * 179.97438 * 14 4 3 43 43 H 1.08996 * 109.39171 * 61.36781 * 15 14 4 44 44 H 1.09003 * 109.62547 * 301.25747 * 15 14 4 45 45 H 1.09002 * 109.58742 * 185.72218 * 16 15 14 46 46 H 1.08998 * 109.59351 * 65.43846 * 16 15 14 47 47 H 0.96997 * 120.00271 * 180.02562 * 21 20 18 48 48 H 1.09004 * 109.58144 * 66.18005 * 26 17 16 49 49 H 1.08998 * 109.58393 * 186.45981 * 26 17 16 50 50 H 1.09000 * 109.49960 * 58.65749 * 27 14 4 51 51 H 1.09005 * 109.49202 * 298.56684 * 27 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.1398 0.7814 5 6 3.3579 2.3242 0.1783 6 8 3.7621 3.2671 0.8251 7 6 3.1071 2.4764 -1.2998 8 6 4.2690 1.9796 -2.1762 9 6 4.0112 3.2018 -3.0733 10 8 5.2060 3.8251 -3.5487 11 6 5.4049 3.7013 -4.9583 12 6 6.7064 4.4021 -5.3532 13 6 3.4104 3.8861 -1.8341 14 6 3.3780 0.9917 2.2183 15 6 2.0752 0.5981 2.9189 16 6 2.3276 0.4746 4.4248 17 7 3.4405 -0.4589 4.6456 18 6 3.2957 -1.5309 5.4853 19 1 3.8765 -2.4268 5.3223 20 6 2.4027 -1.4660 6.5461 21 7 1.9475 -0.3000 6.9528 22 14 1.8468 -3.0338 7.3961 23 1 2.4995 -4.2031 6.7542 24 1 2.2274 -2.9807 8.8306 25 1 0.3721 -3.1638 7.2797 26 6 4.7114 -0.2207 3.9479 27 6 4.4335 -0.0927 2.4469 28 1 -1.0501 -0.0004 -0.0001 29 1 3.0094 0.0806 -1.0245 30 1 3.0098 -0.9264 0.4432 31 1 2.1333 2.0938 -1.6055 32 1 5.2359 2.0031 -1.6736 33 1 4.0692 1.0274 -2.6675 34 1 3.2852 3.0169 -3.8650 35 1 5.4643 2.6463 -5.2256 36 1 4.5698 4.1631 -5.4850 37 1 6.8579 4.3081 -6.4286 38 1 6.6465 5.4572 -5.0860 39 1 7.5417 3.9407 -4.8265 40 1 2.5175 4.4730 -2.0493 41 1 4.1426 4.4308 -1.2381 42 1 3.7352 1.9376 2.6253 43 1 1.7290 -0.3587 2.5283 44 1 1.3177 1.3608 2.7384 45 1 1.4308 0.0967 4.9158 46 1 2.5838 1.4519 4.8338 47 1 1.3238 -0.2547 7.6942 48 1 5.1630 0.7006 4.3158 49 1 5.3883 -1.0562 4.1264 50 1 5.3529 0.1793 1.9286 51 1 4.0664 -1.0444 2.0624 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699782015.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:34 Heat of formation + Delta-G solvation = 18.207223 kcal Electronic energy + Delta-G solvation = -29642.787097 eV Core-core repulsion = 25738.381892 eV Total energy + Delta-G solvation = -3904.405204 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -40.73424 -39.01857 -37.48108 -36.14672 -35.62510 -33.08771 -32.08596 -31.30328 -30.24589 -29.59160 -27.17007 -26.43245 -25.97211 -24.63438 -23.14277 -22.19061 -22.07018 -20.45780 -19.39018 -19.10765 -18.12408 -17.50821 -16.76827 -16.66786 -16.02337 -15.89080 -15.61488 -15.09384 -14.79682 -14.31954 -13.82447 -13.71793 -13.57117 -13.44574 -13.22562 -13.09833 -12.98184 -12.85228 -12.62761 -12.54174 -12.37598 -11.81391 -11.77762 -11.49181 -11.33875 -11.19939 -11.11213 -10.94382 -10.87982 -10.73516 -10.52097 -10.40821 -10.14458 -10.12430 -10.03634 -9.77452 -9.72824 -9.62657 -9.38306 -8.59606 -8.38311 -6.67525 -5.78276 -3.21042 2.48256 2.72151 2.84283 3.26513 3.36937 3.44725 3.46800 3.57036 4.19742 4.28493 4.39693 4.47660 4.49620 4.53946 4.70901 4.74106 4.88699 5.01936 5.05741 5.15620 5.30067 5.31470 5.36528 5.42706 5.47355 5.52396 5.55081 5.57015 5.63200 5.72575 5.76559 5.83248 5.86747 5.93717 6.05585 6.10126 6.24796 6.34197 6.49758 6.60606 6.64982 6.78937 6.90234 6.96462 7.00215 7.36654 7.51648 7.62201 7.68074 7.80193 8.30011 8.45469 9.21409 9.84809 10.41831 11.30395 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.023096 B = 0.002470 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.059262 B =11334.076550 C =11745.270184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.203 4.203 3 C 0.216 3.784 4 N -0.600 5.600 5 C 0.528 3.472 6 O -0.534 6.534 7 C -0.139 4.139 8 C -0.138 4.138 9 C 0.064 3.936 10 O -0.371 6.371 11 C 0.055 3.945 12 C -0.153 4.153 13 C -0.113 4.113 14 C 0.144 3.856 15 C -0.141 4.141 16 C 0.174 3.826 17 N -0.592 5.592 18 C -0.251 4.251 19 H 0.066 0.934 20 C 0.002 3.998 21 N -0.901 5.901 22 Si 0.901 3.099 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.148 3.852 27 C -0.138 4.138 28 H 0.215 0.785 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.113 0.887 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.048 0.952 36 H 0.047 0.953 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.106 0.894 42 H 0.096 0.904 43 H 0.057 0.943 44 H 0.048 0.952 45 H 0.089 0.911 46 H 0.020 0.980 47 H 0.253 0.747 48 H 0.020 0.980 49 H 0.057 0.943 50 H 0.054 0.946 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.981 4.303 -25.323 25.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.205 4.205 3 C 0.094 3.906 4 N -0.331 5.331 5 C 0.315 3.685 6 O -0.410 6.410 7 C -0.160 4.160 8 C -0.176 4.176 9 C 0.006 3.994 10 O -0.290 6.290 11 C -0.022 4.022 12 C -0.210 4.210 13 C -0.151 4.151 14 C 0.043 3.957 15 C -0.181 4.181 16 C 0.047 3.953 17 N -0.315 5.315 18 C -0.381 4.381 19 H 0.084 0.916 20 C -0.197 4.197 21 N -0.546 5.546 22 Si 0.731 3.269 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.216 1.216 26 C 0.021 3.979 27 C -0.178 4.178 28 H 0.232 0.768 29 H 0.115 0.885 30 H 0.124 0.876 31 H 0.131 0.869 32 H 0.115 0.885 33 H 0.095 0.905 34 H 0.107 0.893 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.124 0.876 42 H 0.114 0.886 43 H 0.076 0.924 44 H 0.067 0.933 45 H 0.108 0.892 46 H 0.038 0.962 47 H 0.063 0.937 48 H 0.038 0.962 49 H 0.076 0.924 50 H 0.073 0.927 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.270 4.939 -24.688 25.279 hybrid contribution -0.987 -1.062 0.316 1.484 sum 1.283 3.876 -24.372 24.712 Atomic orbital electron populations 1.24916 0.95903 0.99331 1.00368 1.23544 0.94911 1.01321 1.00702 1.18400 0.83794 0.91466 0.96989 1.48251 1.64620 1.10228 1.10011 1.20287 0.76931 0.82233 0.89006 1.90692 1.45651 1.38583 1.66121 1.22518 1.00803 1.00189 0.92478 1.23460 0.98684 0.98434 0.97000 1.23634 0.87173 0.93620 0.94925 1.88005 1.41778 1.76870 1.22373 1.22514 0.98059 0.99454 0.82153 1.21753 0.96724 1.01450 1.01061 1.23113 1.01492 0.95207 0.95239 1.21250 0.96649 1.00463 0.77383 1.22536 0.95158 1.00172 1.00273 1.20755 0.93318 0.92683 0.88518 1.44091 1.06881 1.29675 1.50825 1.19209 1.22615 0.91660 1.04618 0.91620 1.25064 1.01849 0.96408 0.96387 1.70039 1.34644 1.22199 1.27707 0.86240 0.78342 0.83137 0.79147 1.20267 1.21732 1.21607 1.20858 0.89548 0.98602 0.88926 1.22382 0.97305 0.98018 1.00134 0.76765 0.88508 0.87597 0.86907 0.88468 0.90470 0.89292 0.93409 0.93461 0.91221 0.91824 0.91773 0.90564 0.87580 0.88557 0.92383 0.93294 0.89247 0.96236 0.93662 0.96184 0.92410 0.92744 0.92126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.20 19.25 29.55 0.57 -1.63 16 2 C -0.20 -2.59 11.75 -37.12 -0.44 -3.02 16 3 C 0.22 2.55 5.07 -6.83 -0.03 2.52 16 4 N -0.60 -8.87 2.37 -169.35 -0.40 -9.27 16 5 C 0.53 7.98 7.20 -10.98 -0.08 7.90 16 6 O -0.53 -10.21 15.23 5.56 0.08 -10.13 16 7 C -0.14 -1.49 2.79 -90.96 -0.25 -1.75 16 8 C -0.14 -1.25 6.75 -25.92 -0.17 -1.43 16 9 C 0.06 0.57 4.31 -25.92 -0.11 0.46 16 10 O -0.37 -3.83 10.35 -35.23 -0.36 -4.20 16 11 C 0.05 0.40 6.50 37.16 0.24 0.64 16 12 C -0.15 -0.98 10.28 37.16 0.38 -0.59 16 13 C -0.11 -1.21 7.24 -25.92 -0.19 -1.40 16 14 C 0.14 2.59 2.48 -67.87 -0.17 2.42 16 15 C -0.14 -2.80 4.75 -26.60 -0.13 -2.93 16 16 C 0.17 4.23 5.30 -3.71 -0.02 4.21 16 17 N -0.59 -14.85 3.00 -172.32 -0.52 -15.37 16 18 C -0.25 -6.87 9.58 -15.06 -0.14 -7.02 16 19 H 0.07 1.76 7.89 -52.48 -0.41 1.35 16 20 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 21 N -0.90 -26.38 11.20 55.49 0.62 -25.76 16 22 Si 0.90 21.69 29.59 -169.99 -5.03 16.66 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 C 0.15 3.11 6.52 -3.71 -0.02 3.09 16 27 C -0.14 -2.40 5.31 -26.62 -0.14 -2.54 16 28 H 0.22 1.85 7.80 -54.08 -0.42 1.43 16 29 H 0.10 0.85 5.79 -51.93 -0.30 0.55 16 30 H 0.11 1.25 6.46 -51.92 -0.34 0.92 16 31 H 0.11 1.05 7.55 -51.93 -0.39 0.66 16 32 H 0.10 1.05 8.09 -51.93 -0.42 0.63 16 33 H 0.08 0.53 7.68 -51.93 -0.40 0.13 16 34 H 0.09 0.59 7.87 -51.93 -0.41 0.19 16 35 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.07 0.31 8.14 -51.92 -0.42 -0.11 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.11 1.41 7.43 -51.93 -0.39 1.02 16 42 H 0.10 1.98 6.90 -51.93 -0.36 1.62 16 43 H 0.06 1.16 7.01 -51.93 -0.36 0.79 16 44 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.09 2.43 6.06 -51.93 -0.31 2.11 16 46 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 48 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 50 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 51 H 0.06 1.02 6.72 -51.93 -0.35 0.67 16 LS Contribution 403.94 15.07 6.09 6.09 Total: -1.00 -32.81 403.94 -8.95 -41.76 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -8.64 Total: 1.33 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -0.79 Total: -1.11 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: -0.30 Total: -50.39 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.28 Total: -14.32 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.81 -8.95 -41.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699782015.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.965 kcal (2) G-P(sol) polarization free energy of solvation -32.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds