Wall clock time and date at job start Tue Mar 31 2020 19:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47069 * 214.45207 * 3 2 1 5 5 C 1.34781 * 120.00024 * 270.00255 * 4 3 2 6 6 O 1.21280 * 120.00073 * 180.02562 * 5 4 3 7 7 C 1.50698 * 119.99632 * 359.97438 * 5 4 3 8 8 C 1.53776 * 113.61919 * 277.49921 * 7 5 4 9 9 C 1.53784 * 87.08332 * 220.02253 * 8 7 5 10 10 O 1.42896 * 113.61475 * 139.98098 * 9 8 7 11 11 C 1.42898 * 114.00002 * 112.50332 * 10 9 8 12 12 C 1.52998 * 109.47002 * 179.97438 * 11 10 9 13 13 C 1.53781 * 87.07967 * 25.43168 * 9 8 7 14 14 C 1.46500 * 119.99915 * 90.00020 * 4 3 2 15 15 C 1.53070 * 109.45300 * 299.78984 * 14 4 3 16 16 C 1.53192 * 109.29486 * 181.24657 * 15 14 4 17 17 N 1.46923 * 108.89086 * 305.57609 * 16 15 14 18 18 C 1.36938 * 120.62890 * 233.55909 * 17 16 15 19 19 H 1.08011 * 119.99821 * 151.82869 * 18 17 16 20 20 C 1.38810 * 120.00150 * 331.82504 * 18 17 16 21 21 N 1.31613 * 120.00273 * 343.07447 * 20 18 17 22 22 Si 1.86803 * 119.99828 * 163.06738 * 20 18 17 23 23 H 1.48503 * 109.47179 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.47229 * 120.00279 * 22 20 18 25 25 H 1.48502 * 109.47136 * 240.00365 * 22 20 18 26 26 C 1.46928 * 118.73969 * 53.53853 * 17 16 15 27 27 C 1.53041 * 109.46255 * 60.00336 * 14 4 3 28 28 H 4.40638 * 5.51367 * 180.02562 * 4 1 2 29 29 H 1.09001 * 109.47520 * 94.45295 * 3 2 1 30 30 H 1.09007 * 109.47345 * 334.45130 * 3 2 1 31 31 H 1.08999 * 112.84931 * 48.81115 * 7 5 4 32 32 H 1.08995 * 113.61316 * 334.57160 * 8 7 5 33 33 H 1.09001 * 113.61559 * 105.47063 * 8 7 5 34 34 H 1.09004 * 113.61013 * 270.88653 * 9 8 7 35 35 H 1.08997 * 109.47273 * 300.00153 * 11 10 9 36 36 H 1.08997 * 109.46981 * 60.00036 * 11 10 9 37 37 H 1.09011 * 109.47026 * 180.02562 * 12 11 10 38 38 H 1.09002 * 109.47250 * 299.99716 * 12 11 10 39 39 H 1.08997 * 109.47205 * 60.00195 * 12 11 10 40 40 H 1.08998 * 113.61334 * 220.02082 * 13 9 8 41 41 H 1.08996 * 113.61370 * 89.11885 * 13 9 8 42 42 H 1.09003 * 109.45820 * 179.97438 * 14 4 3 43 43 H 1.08996 * 109.39171 * 61.36781 * 15 14 4 44 44 H 1.09003 * 109.62547 * 301.25747 * 15 14 4 45 45 H 1.09002 * 109.58742 * 185.72218 * 16 15 14 46 46 H 1.08998 * 109.59351 * 65.43846 * 16 15 14 47 47 H 0.96997 * 120.00271 * 180.02562 * 21 20 18 48 48 H 1.09004 * 109.58144 * 66.18005 * 26 17 16 49 49 H 1.08998 * 109.58393 * 186.45981 * 26 17 16 50 50 H 1.09000 * 109.49960 * 58.65749 * 27 14 4 51 51 H 1.09005 * 109.49202 * 298.56684 * 27 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.1398 0.7814 5 6 3.3579 2.3242 0.1783 6 8 3.7621 3.2671 0.8251 7 6 3.1071 2.4764 -1.2998 8 6 4.2690 1.9796 -2.1762 9 6 4.0112 3.2018 -3.0733 10 8 5.2060 3.8251 -3.5487 11 6 5.4049 3.7013 -4.9583 12 6 6.7064 4.4021 -5.3532 13 6 3.4104 3.8861 -1.8341 14 6 3.3780 0.9917 2.2183 15 6 2.0752 0.5981 2.9189 16 6 2.3276 0.4746 4.4248 17 7 3.4405 -0.4589 4.6456 18 6 3.2957 -1.5309 5.4853 19 1 3.8765 -2.4268 5.3223 20 6 2.4027 -1.4660 6.5461 21 7 1.9475 -0.3000 6.9528 22 14 1.8468 -3.0338 7.3961 23 1 2.4995 -4.2031 6.7542 24 1 2.2274 -2.9807 8.8306 25 1 0.3721 -3.1638 7.2797 26 6 4.7114 -0.2207 3.9479 27 6 4.4335 -0.0927 2.4469 28 1 -1.0501 -0.0004 -0.0001 29 1 3.0094 0.0806 -1.0245 30 1 3.0098 -0.9264 0.4432 31 1 2.1333 2.0938 -1.6055 32 1 5.2359 2.0031 -1.6736 33 1 4.0692 1.0274 -2.6675 34 1 3.2852 3.0169 -3.8650 35 1 5.4643 2.6463 -5.2256 36 1 4.5698 4.1631 -5.4850 37 1 6.8579 4.3081 -6.4286 38 1 6.6465 5.4572 -5.0860 39 1 7.5417 3.9407 -4.8265 40 1 2.5175 4.4730 -2.0493 41 1 4.1426 4.4308 -1.2381 42 1 3.7352 1.9376 2.6253 43 1 1.7290 -0.3587 2.5283 44 1 1.3177 1.3608 2.7384 45 1 1.4308 0.0967 4.9158 46 1 2.5838 1.4519 4.8338 47 1 1.3238 -0.2547 7.6942 48 1 5.1630 0.7006 4.3158 49 1 5.3883 -1.0562 4.1264 50 1 5.3529 0.1793 1.9286 51 1 4.0664 -1.0444 2.0624 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699782015.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:33 Heat of formation + Delta-G solvation = -0.742087 kcal Electronic energy + Delta-G solvation = -29643.608800 eV Core-core repulsion = 25738.381892 eV Total energy + Delta-G solvation = -3905.226908 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.79872 -40.04166 -38.86744 -37.04865 -36.98087 -34.63859 -33.43484 -32.08791 -31.78689 -31.33283 -28.20822 -27.74106 -26.73005 -26.22421 -23.92361 -23.78826 -23.52454 -21.53414 -20.83473 -20.18966 -19.19992 -18.64763 -18.42797 -17.74205 -16.96588 -16.81338 -16.58492 -16.47960 -16.07598 -15.65831 -15.40930 -15.14917 -14.87300 -14.61761 -14.41211 -14.34491 -14.18582 -13.99288 -13.78876 -13.46107 -13.34681 -13.21938 -13.07323 -12.70050 -12.58220 -12.47180 -12.43460 -12.22960 -12.07341 -11.99022 -11.95253 -11.79298 -11.59238 -11.56300 -11.39247 -11.29540 -11.07475 -10.70500 -10.59555 -10.32380 -9.82386 -8.73470 -7.88949 -5.35485 1.40786 1.46409 1.47609 1.58702 1.60608 1.93606 2.31686 2.50324 2.84620 3.27003 3.39526 3.49080 3.55463 3.60900 3.66991 3.76205 3.87576 4.02552 4.05964 4.22470 4.24780 4.29407 4.33355 4.43528 4.45307 4.48491 4.56249 4.62835 4.71041 4.75543 4.79318 4.83344 4.88085 4.96756 5.00726 5.03377 5.05915 5.08109 5.09461 5.14319 5.22415 5.26782 5.33794 5.42518 5.54703 5.61891 5.66308 6.36080 6.37140 6.41114 6.72395 7.11550 7.11950 7.81704 8.35318 9.18476 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.023096 B = 0.002470 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.059262 B =11334.076550 C =11745.270184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.233 4.233 3 C 0.213 3.787 4 N -0.597 5.597 5 C 0.521 3.479 6 O -0.585 6.585 7 C -0.129 4.129 8 C -0.131 4.131 9 C 0.074 3.926 10 O -0.400 6.400 11 C 0.048 3.952 12 C -0.154 4.154 13 C -0.123 4.123 14 C 0.153 3.847 15 C -0.118 4.118 16 C 0.182 3.818 17 N -0.608 5.608 18 C -0.259 4.259 19 H 0.073 0.927 20 C -0.055 4.055 21 N -0.939 5.939 22 Si 0.970 3.030 23 H -0.262 1.262 24 H -0.294 1.294 25 H -0.290 1.290 26 C 0.142 3.858 27 C -0.121 4.121 28 H 0.239 0.761 29 H 0.134 0.866 30 H 0.110 0.890 31 H 0.139 0.861 32 H 0.076 0.924 33 H 0.112 0.888 34 H 0.122 0.878 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.090 0.910 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.087 0.913 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.046 0.954 45 H 0.058 0.942 46 H -0.013 1.013 47 H 0.249 0.751 48 H 0.006 0.994 49 H 0.067 0.933 50 H 0.077 0.923 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.579 2.210 -28.835 28.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.234 4.234 3 C 0.092 3.908 4 N -0.327 5.327 5 C 0.311 3.689 6 O -0.464 6.464 7 C -0.150 4.150 8 C -0.168 4.168 9 C 0.016 3.984 10 O -0.320 6.320 11 C -0.028 4.028 12 C -0.211 4.211 13 C -0.161 4.161 14 C 0.050 3.950 15 C -0.158 4.158 16 C 0.056 3.944 17 N -0.331 5.331 18 C -0.389 4.389 19 H 0.091 0.909 20 C -0.250 4.250 21 N -0.585 5.585 22 Si 0.798 3.202 23 H -0.186 1.186 24 H -0.222 1.222 25 H -0.217 1.217 26 C 0.016 3.984 27 C -0.161 4.161 28 H 0.256 0.744 29 H 0.152 0.848 30 H 0.128 0.872 31 H 0.156 0.844 32 H 0.094 0.906 33 H 0.130 0.870 34 H 0.140 0.860 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.106 0.894 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.065 0.935 45 H 0.076 0.924 46 H 0.005 0.995 47 H 0.058 0.942 48 H 0.024 0.976 49 H 0.085 0.915 50 H 0.096 0.904 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.884 2.818 -28.255 28.458 hybrid contribution -0.832 -0.330 1.411 1.671 sum 1.052 2.487 -26.844 26.980 Atomic orbital electron populations 1.25664 0.96835 0.98165 0.99357 1.23828 0.95521 1.02365 1.01701 1.18709 0.83644 0.90049 0.98406 1.48171 1.64499 1.11432 1.08565 1.21141 0.75625 0.81333 0.90761 1.90675 1.47854 1.40273 1.67629 1.22569 1.02728 1.00664 0.89045 1.23437 0.96740 1.00314 0.96354 1.23663 0.87350 0.92443 0.94925 1.87984 1.42442 1.77257 1.24291 1.22729 0.98745 1.00595 0.80736 1.21791 0.96270 1.00698 1.02325 1.23126 1.01402 0.95328 0.96294 1.20824 0.95512 0.99037 0.79644 1.22206 0.96252 1.00360 0.97026 1.20489 0.92012 0.90715 0.91215 1.44331 1.08379 1.29305 1.51084 1.19582 1.22273 0.92434 1.04588 0.90919 1.25885 1.02363 0.99284 0.97446 1.70210 1.35491 1.24394 1.28384 0.85174 0.77563 0.79889 0.77616 1.18613 1.22154 1.21723 1.21020 0.88088 0.98232 0.91017 1.22173 0.98144 0.98467 0.97302 0.74441 0.84819 0.87240 0.84366 0.90576 0.86974 0.85999 0.91958 0.92069 0.89089 0.92759 0.92729 0.89414 0.91104 0.91808 0.91733 0.93545 0.92362 0.99525 0.94154 0.97614 0.91473 0.90441 0.90544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.77 19.25 74.32 1.43 -2.34 16 2 C -0.23 -5.25 11.75 31.13 0.37 -4.88 16 3 C 0.21 4.37 5.07 84.57 0.43 4.79 16 4 N -0.60 -16.86 2.37 -808.08 -1.91 -18.78 16 5 C 0.52 15.47 7.20 87.66 0.63 16.10 16 6 O -0.58 -23.21 15.23 -3.03 -0.05 -23.26 16 7 C -0.13 -2.49 2.79 -11.01 -0.03 -2.52 16 8 C -0.13 -1.96 6.75 31.12 0.21 -1.76 16 9 C 0.07 1.10 4.31 31.12 0.13 1.24 16 10 O -0.40 -7.59 10.35 -148.98 -1.54 -9.13 16 11 C 0.05 0.57 6.50 71.98 0.47 1.04 16 12 C -0.15 -1.73 10.28 71.98 0.74 -0.99 16 13 C -0.12 -2.52 7.24 31.12 0.23 -2.30 16 14 C 0.15 5.52 2.48 45.03 0.11 5.63 16 15 C -0.12 -4.76 4.75 30.68 0.15 -4.62 16 16 C 0.18 9.27 5.30 86.36 0.46 9.73 16 17 N -0.61 -31.09 3.00 -699.10 -2.09 -33.18 16 18 C -0.26 -14.23 9.58 84.03 0.81 -13.43 16 19 H 0.07 3.83 7.89 -2.90 -0.02 3.81 16 20 C -0.05 -3.09 4.92 84.86 0.42 -2.67 16 21 N -0.94 -56.88 11.20 21.65 0.24 -56.63 16 22 Si 0.97 44.99 29.59 68.60 2.03 47.02 16 23 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 24 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 25 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 26 C 0.14 6.02 6.52 86.36 0.56 6.59 16 27 C -0.12 -4.06 5.31 30.67 0.16 -3.90 16 28 H 0.24 3.36 7.80 -4.41 -0.03 3.33 16 29 H 0.13 1.72 5.79 -2.39 -0.01 1.71 16 30 H 0.11 2.20 6.46 -2.38 -0.02 2.19 16 31 H 0.14 2.02 7.55 -2.39 -0.02 2.00 16 32 H 0.08 1.51 8.09 -2.39 -0.02 1.49 16 33 H 0.11 0.93 7.68 -2.39 -0.02 0.91 16 34 H 0.12 1.04 7.87 -2.39 -0.02 1.03 16 35 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 38 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.07 1.97 7.43 -2.39 -0.02 1.95 16 42 H 0.06 2.75 6.90 -2.39 -0.02 2.73 16 43 H 0.06 2.52 7.01 -2.39 -0.02 2.50 16 44 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.06 3.31 6.06 -2.39 -0.01 3.30 16 46 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 47 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 48 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 49 H 0.07 2.68 7.93 -2.39 -0.02 2.66 16 50 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 51 H 0.08 2.36 6.72 -2.38 -0.02 2.35 16 Total: -1.00 -75.60 403.94 4.84 -70.77 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 0.89 Total: 17.47 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: 7.26 Total: 5.72 kcal Atomic # 7 Polarization: -104.82 SS G_CDS: -3.77 Total: -108.59 kcal Atomic # 8 Polarization: -30.80 SS G_CDS: -1.59 Total: -32.39 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -75.60 4.84 -70.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699782015.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.027 kcal (2) G-P(sol) polarization free energy of solvation -75.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds