Wall clock time and date at job start Tue Mar 31 2020 18:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47132 * 2 1 4 4 C 1.36939 * 120.00276 * 275.23858 * 3 2 1 5 5 H 1.07999 * 119.99689 * 37.70824 * 4 3 2 6 6 C 1.38814 * 120.00055 * 217.69801 * 4 3 2 7 7 N 1.31616 * 119.99815 * 21.65901 * 6 4 3 8 8 Si 1.86797 * 120.00082 * 201.65216 * 6 4 3 9 9 H 1.48497 * 109.46892 * 90.00364 * 8 6 4 10 10 H 1.48494 * 109.47089 * 210.00282 * 8 6 4 11 11 H 1.48504 * 109.47257 * 330.00744 * 8 6 4 12 12 C 1.46501 * 119.99880 * 95.23973 * 3 2 1 13 13 C 1.52998 * 109.47195 * 270.00159 * 12 3 2 14 14 C 1.53044 * 109.46265 * 174.99623 * 13 12 3 15 15 C 1.53191 * 109.31053 * 181.38482 * 14 13 12 16 16 N 1.46924 * 108.77859 * 305.36459 * 15 14 13 17 17 C 1.34775 * 120.63455 * 233.59186 * 16 15 14 18 18 O 1.21288 * 119.99684 * 359.97438 * 17 16 15 19 19 C 1.50701 * 120.00244 * 180.02562 * 17 16 15 20 20 C 1.52998 * 109.47225 * 179.97438 * 19 17 16 21 21 C 1.50701 * 109.47225 * 180.02562 * 20 19 17 22 22 C 1.34506 * 125.79136 * 90.02691 * 21 20 19 23 23 C 1.41383 * 106.84360 * 180.02562 * 22 21 20 24 24 C 1.34516 * 106.83959 * 359.97438 * 23 22 21 25 25 O 1.34302 * 125.78852 * 270.02536 * 21 20 19 26 26 C 1.46923 * 118.73837 * 53.86175 * 16 15 14 27 27 C 1.53039 * 109.45955 * 295.06777 * 13 12 3 28 28 H 1.08997 * 109.47229 * 299.99977 * 1 2 3 29 29 H 1.09010 * 109.47107 * 60.00060 * 1 2 3 30 30 H 1.09000 * 109.47040 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47591 * 240.00410 * 2 1 3 32 32 H 1.08994 * 109.47468 * 120.00072 * 2 1 3 33 33 H 0.97000 * 119.99933 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.47226 * 150.00056 * 12 3 2 35 35 H 1.09002 * 109.47171 * 29.99750 * 12 3 2 36 36 H 1.09003 * 109.46023 * 55.02637 * 13 12 3 37 37 H 1.09000 * 109.49312 * 61.43957 * 14 13 12 38 38 H 1.08992 * 109.52576 * 301.35165 * 14 13 12 39 39 H 1.09008 * 109.58334 * 185.58078 * 15 14 13 40 40 H 1.08997 * 109.70730 * 65.22793 * 15 14 13 41 41 H 1.08997 * 109.47207 * 59.99847 * 19 17 16 42 42 H 1.08998 * 109.46885 * 299.99432 * 19 17 16 43 43 H 1.09000 * 109.47312 * 59.99689 * 20 19 17 44 44 H 1.09005 * 109.47337 * 299.99865 * 20 19 17 45 45 H 1.08004 * 126.57907 * 359.97118 * 22 21 20 46 46 H 1.08000 * 126.58491 * 180.02562 * 23 22 21 47 47 H 1.08002 * 125.79263 * 179.97438 * 24 23 22 48 48 H 1.09003 * 109.58473 * 65.92918 * 26 16 15 49 49 H 1.08998 * 109.58869 * 186.35173 * 26 16 15 50 50 H 1.09001 * 109.49773 * 298.56183 * 27 13 12 51 51 H 1.09004 * 109.50072 * 58.63200 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1445 2.0629 -1.1809 5 1 1.4117 1.9287 -1.9628 6 6 3.2142 2.9266 -1.3730 7 7 4.3070 2.7910 -0.6522 8 14 3.1026 4.2811 -2.6545 9 1 2.5452 5.5080 -2.0306 10 1 4.4576 4.5694 -3.1892 11 1 2.2161 3.8426 -3.7623 12 6 2.3717 2.0332 1.2635 13 6 1.1405 2.7390 1.8350 14 6 1.4760 3.3136 3.2133 15 6 0.2313 3.9892 3.7971 16 7 -0.2639 4.9819 2.8338 17 6 -0.4682 6.2602 3.2086 18 8 -0.2435 6.6005 4.3509 19 6 -0.9770 7.2666 2.2089 20 6 -1.1212 8.6307 2.8865 21 6 -1.6306 9.6369 1.8869 22 6 -2.9231 9.9168 1.6415 23 6 -2.9431 10.9124 0.6378 24 6 -1.6616 11.1817 0.3304 25 8 -0.8710 10.4061 1.0901 26 6 -0.5378 4.5532 1.4554 27 6 0.7208 3.8724 0.8963 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 5.0546 3.3942 -0.7866 34 1 3.1604 2.7645 1.0868 35 1 2.7232 1.2841 1.9730 36 1 0.3230 2.0240 1.9290 37 1 2.2764 4.0471 3.1165 38 1 1.7975 2.5093 3.8749 39 1 0.4898 4.4853 4.7327 40 1 -0.5405 3.2418 3.9810 41 1 -1.9474 6.9446 1.8310 42 1 -0.2723 7.3444 1.3810 43 1 -0.1510 8.9528 3.2648 44 1 -1.8261 8.5525 3.7143 45 1 -3.7810 9.4668 2.1188 46 1 -3.8192 11.3697 0.2022 47 1 -1.3254 11.8993 -0.4034 48 1 -1.3701 3.8494 1.4503 49 1 -0.7869 5.4214 0.8454 50 1 1.5284 4.6006 0.8214 51 1 0.5050 3.4655 -0.0917 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700342589.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:07 Heat of formation + Delta-G solvation = -15.612617 kcal Electronic energy + Delta-G solvation = -29786.363493 eV Core-core repulsion = 25880.491751 eV Total energy + Delta-G solvation = -3905.871742 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.70614 -40.05780 -37.68178 -35.71111 -34.24279 -32.99720 -32.65699 -31.87731 -30.77105 -29.13208 -28.75494 -26.71614 -24.84480 -24.04220 -22.66299 -22.25673 -21.90151 -20.59992 -20.29314 -19.74576 -18.61793 -17.69552 -16.79191 -16.60889 -16.22140 -15.74177 -15.55204 -14.92321 -14.61641 -14.13662 -14.05421 -13.88649 -13.59077 -13.41016 -13.17062 -13.00440 -12.98089 -12.84174 -12.64250 -12.43387 -12.32001 -12.07901 -12.03920 -11.65661 -11.34921 -11.23710 -11.13826 -10.89652 -10.77213 -10.58142 -10.42211 -10.27952 -10.08922 -10.06125 -9.92773 -9.68492 -9.52361 -9.40539 -8.61001 -8.45764 -8.40545 -6.54910 -5.79296 -3.37403 1.56499 2.44278 2.71411 2.81902 3.20836 3.31622 3.40461 3.41509 4.38613 4.44848 4.73988 4.80974 4.84280 4.88094 5.02876 5.15376 5.19601 5.34577 5.38407 5.46081 5.52062 5.54031 5.55567 5.65076 5.74573 5.77744 5.79363 5.82825 5.93911 5.99695 6.01251 6.08533 6.27881 6.32318 6.34501 6.37911 6.40687 6.50561 6.63071 6.69704 6.85085 6.90735 6.96478 6.99631 7.00333 7.14863 7.25154 7.56952 7.72205 7.80930 8.26376 8.51550 9.19730 9.82317 10.41994 11.19520 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011111 B = 0.003323 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.333096 B = 8423.433699 C = 9868.446209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.141 3.859 3 N -0.584 5.584 4 C -0.255 4.255 5 H 0.058 0.942 6 C 0.018 3.982 7 N -0.884 5.884 8 Si 0.885 3.115 9 H -0.284 1.284 10 H -0.292 1.292 11 H -0.277 1.277 12 C 0.153 3.847 13 C -0.101 4.101 14 C -0.128 4.128 15 C 0.114 3.886 16 N -0.604 5.604 17 C 0.516 3.484 18 O -0.554 6.554 19 C -0.138 4.138 20 C -0.024 4.024 21 C -0.006 4.006 22 C -0.212 4.212 23 C -0.215 4.215 24 C -0.044 4.044 25 O -0.175 6.175 26 C 0.101 3.899 27 C -0.115 4.115 28 H 0.043 0.957 29 H 0.048 0.952 30 H 0.033 0.967 31 H 0.041 0.959 32 H 0.031 0.969 33 H 0.254 0.746 34 H 0.092 0.908 35 H 0.021 0.979 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.061 0.939 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.147 0.853 46 H 0.147 0.853 47 H 0.201 0.799 48 H 0.065 0.935 49 H 0.077 0.923 50 H 0.058 0.942 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.929 9.319 5.111 16.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.014 3.986 3 N -0.305 5.305 4 C -0.385 4.385 5 H 0.076 0.924 6 C -0.183 4.183 7 N -0.527 5.527 8 Si 0.715 3.285 9 H -0.211 1.211 10 H -0.218 1.218 11 H -0.202 1.202 12 C 0.026 3.974 13 C -0.122 4.122 14 C -0.167 4.167 15 C -0.008 4.008 16 N -0.336 5.336 17 C 0.304 3.696 18 O -0.433 6.433 19 C -0.178 4.178 20 C -0.061 4.061 21 C -0.056 4.056 22 C -0.232 4.232 23 C -0.234 4.234 24 C -0.112 4.112 25 O -0.070 6.070 26 C -0.022 4.022 27 C -0.153 4.153 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.064 0.936 34 H 0.110 0.890 35 H 0.039 0.961 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.080 0.920 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.108 0.892 44 H 0.119 0.881 45 H 0.165 0.835 46 H 0.164 0.836 47 H 0.218 0.782 48 H 0.084 0.916 49 H 0.095 0.905 50 H 0.077 0.923 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.303 9.535 5.681 16.569 hybrid contribution -0.323 0.827 -0.950 1.301 sum -12.626 10.362 4.730 17.005 Atomic orbital electron populations 1.22368 1.00207 0.98800 1.01074 1.20824 0.91635 0.87563 0.98549 1.43758 1.76064 1.08078 1.02553 1.18907 1.04407 1.21061 0.94143 0.92404 1.25117 0.94224 1.01251 0.97719 1.70004 1.03057 1.37180 1.42411 0.86571 0.77084 0.83077 0.81815 1.21127 1.21806 1.20241 1.20941 0.94595 0.96286 0.85576 1.21803 1.01207 0.96700 0.92491 1.21947 0.96840 0.99888 0.98028 1.21605 0.96234 0.90495 0.92462 1.48185 1.64517 1.08722 1.12223 1.20471 0.77619 0.82753 0.88752 1.90666 1.52985 1.79042 1.20617 1.21694 1.03696 0.93433 0.98964 1.19855 1.03868 0.88873 0.93536 1.22503 0.89735 0.96842 0.96538 1.21604 0.96701 1.02382 1.02468 1.21832 0.97712 1.02101 1.01777 1.24042 0.89537 0.98719 0.98905 1.84050 1.37819 1.42815 1.42364 1.22115 0.99497 0.99639 0.80912 1.21960 0.95076 0.97387 1.00907 0.93750 0.93314 0.94791 0.94064 0.95027 0.93612 0.88998 0.96074 0.92631 0.91821 0.91433 0.89694 0.92028 0.88500 0.88297 0.89225 0.88090 0.83498 0.83551 0.78215 0.91637 0.90502 0.92340 0.88322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 10.21 37.16 0.38 -2.43 16 2 C 0.14 2.83 6.44 -4.04 -0.03 2.80 16 3 N -0.58 -13.37 2.31 -173.24 -0.40 -13.77 16 4 C -0.26 -6.42 7.35 -15.06 -0.11 -6.53 16 5 H 0.06 1.48 7.92 -52.49 -0.42 1.06 16 6 C 0.02 0.46 4.95 -17.43 -0.09 0.37 16 7 N -0.88 -24.39 11.50 55.49 0.64 -23.76 16 8 Si 0.89 20.54 29.61 -169.99 -5.03 15.51 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 12 C 0.15 3.29 4.84 -4.04 -0.02 3.27 16 13 C -0.10 -1.78 2.35 -90.58 -0.21 -1.99 16 14 C -0.13 -2.01 5.36 -26.61 -0.14 -2.15 16 15 C 0.11 1.64 6.43 -3.71 -0.02 1.62 16 16 N -0.60 -8.74 2.97 -172.50 -0.51 -9.25 16 17 C 0.52 7.53 7.70 -10.99 -0.08 7.44 16 18 O -0.55 -9.57 15.40 5.55 0.09 -9.48 16 19 C -0.14 -1.60 4.03 -27.88 -0.11 -1.71 16 20 C -0.02 -0.27 5.04 -27.88 -0.14 -0.41 16 21 C -0.01 -0.07 6.57 -35.63 -0.23 -0.30 16 22 C -0.21 -2.22 10.81 -39.71 -0.43 -2.65 16 23 C -0.22 -2.07 10.91 -39.70 -0.43 -2.50 16 24 C -0.04 -0.43 12.09 29.42 0.36 -0.07 16 25 O -0.17 -2.15 10.65 5.71 0.06 -2.09 16 26 C 0.10 1.40 6.37 -3.49 -0.02 1.38 16 27 C -0.12 -2.03 4.97 -26.38 -0.13 -2.17 16 28 H 0.04 0.74 6.47 -51.93 -0.34 0.40 16 29 H 0.05 0.87 8.14 -51.92 -0.42 0.45 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.04 0.86 8.08 -51.93 -0.42 0.45 16 32 H 0.03 0.60 7.83 -51.93 -0.41 0.20 16 33 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 34 H 0.09 2.30 5.54 -51.93 -0.29 2.02 16 35 H 0.02 0.45 7.86 -51.93 -0.41 0.04 16 36 H 0.06 0.96 6.47 -51.93 -0.34 0.63 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.08 1.27 7.01 -51.92 -0.36 0.90 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.10 0.95 7.93 -51.93 -0.41 0.54 16 42 H 0.10 1.18 7.70 -51.93 -0.40 0.78 16 43 H 0.09 1.08 8.10 -51.93 -0.42 0.66 16 44 H 0.10 1.06 8.10 -51.93 -0.42 0.64 16 45 H 0.15 1.27 8.06 -52.48 -0.42 0.85 16 46 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 47 H 0.20 1.20 8.06 -52.49 -0.42 0.78 16 48 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.08 0.95 5.93 -51.93 -0.31 0.64 16 50 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 51 H 0.10 1.95 6.26 -51.93 -0.32 1.62 16 LS Contribution 400.84 15.07 6.04 6.04 Total: -1.00 -29.61 400.84 -9.22 -38.83 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -8.62 Total: 4.00 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -1.47 Total: -6.03 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: -0.27 Total: -46.78 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.15 Total: -11.57 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.03 Total: 15.51 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -29.61 -9.22 -38.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700342589.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.215 kcal (2) G-P(sol) polarization free energy of solvation -29.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds