Wall clock time and date at job start Tue Mar 31 2020 18:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47132 * 2 1 4 4 C 1.36939 * 120.00276 * 275.23858 * 3 2 1 5 5 H 1.07999 * 119.99689 * 37.70824 * 4 3 2 6 6 C 1.38814 * 120.00055 * 217.69801 * 4 3 2 7 7 N 1.31616 * 119.99815 * 21.65901 * 6 4 3 8 8 Si 1.86797 * 120.00082 * 201.65216 * 6 4 3 9 9 H 1.48497 * 109.46892 * 90.00364 * 8 6 4 10 10 H 1.48494 * 109.47089 * 210.00282 * 8 6 4 11 11 H 1.48504 * 109.47257 * 330.00744 * 8 6 4 12 12 C 1.46501 * 119.99880 * 95.23973 * 3 2 1 13 13 C 1.52998 * 109.47195 * 270.00159 * 12 3 2 14 14 C 1.53044 * 109.46265 * 174.99623 * 13 12 3 15 15 C 1.53191 * 109.31053 * 181.38482 * 14 13 12 16 16 N 1.46924 * 108.77859 * 305.36459 * 15 14 13 17 17 C 1.34775 * 120.63455 * 233.59186 * 16 15 14 18 18 O 1.21288 * 119.99684 * 359.97438 * 17 16 15 19 19 C 1.50701 * 120.00244 * 180.02562 * 17 16 15 20 20 C 1.52998 * 109.47225 * 179.97438 * 19 17 16 21 21 C 1.50701 * 109.47225 * 180.02562 * 20 19 17 22 22 C 1.34506 * 125.79136 * 90.02691 * 21 20 19 23 23 C 1.41383 * 106.84360 * 180.02562 * 22 21 20 24 24 C 1.34516 * 106.83959 * 359.97438 * 23 22 21 25 25 O 1.34302 * 125.78852 * 270.02536 * 21 20 19 26 26 C 1.46923 * 118.73837 * 53.86175 * 16 15 14 27 27 C 1.53039 * 109.45955 * 295.06777 * 13 12 3 28 28 H 1.08997 * 109.47229 * 299.99977 * 1 2 3 29 29 H 1.09010 * 109.47107 * 60.00060 * 1 2 3 30 30 H 1.09000 * 109.47040 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47591 * 240.00410 * 2 1 3 32 32 H 1.08994 * 109.47468 * 120.00072 * 2 1 3 33 33 H 0.97000 * 119.99933 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.47226 * 150.00056 * 12 3 2 35 35 H 1.09002 * 109.47171 * 29.99750 * 12 3 2 36 36 H 1.09003 * 109.46023 * 55.02637 * 13 12 3 37 37 H 1.09000 * 109.49312 * 61.43957 * 14 13 12 38 38 H 1.08992 * 109.52576 * 301.35165 * 14 13 12 39 39 H 1.09008 * 109.58334 * 185.58078 * 15 14 13 40 40 H 1.08997 * 109.70730 * 65.22793 * 15 14 13 41 41 H 1.08997 * 109.47207 * 59.99847 * 19 17 16 42 42 H 1.08998 * 109.46885 * 299.99432 * 19 17 16 43 43 H 1.09000 * 109.47312 * 59.99689 * 20 19 17 44 44 H 1.09005 * 109.47337 * 299.99865 * 20 19 17 45 45 H 1.08004 * 126.57907 * 359.97118 * 22 21 20 46 46 H 1.08000 * 126.58491 * 180.02562 * 23 22 21 47 47 H 1.08002 * 125.79263 * 179.97438 * 24 23 22 48 48 H 1.09003 * 109.58473 * 65.92918 * 26 16 15 49 49 H 1.08998 * 109.58869 * 186.35173 * 26 16 15 50 50 H 1.09001 * 109.49773 * 298.56183 * 27 13 12 51 51 H 1.09004 * 109.50072 * 58.63200 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1445 2.0629 -1.1809 5 1 1.4117 1.9287 -1.9628 6 6 3.2142 2.9266 -1.3730 7 7 4.3070 2.7910 -0.6522 8 14 3.1026 4.2811 -2.6545 9 1 2.5452 5.5080 -2.0306 10 1 4.4576 4.5694 -3.1892 11 1 2.2161 3.8426 -3.7623 12 6 2.3717 2.0332 1.2635 13 6 1.1405 2.7390 1.8350 14 6 1.4760 3.3136 3.2133 15 6 0.2313 3.9892 3.7971 16 7 -0.2639 4.9819 2.8338 17 6 -0.4682 6.2602 3.2086 18 8 -0.2435 6.6005 4.3509 19 6 -0.9770 7.2666 2.2089 20 6 -1.1212 8.6307 2.8865 21 6 -1.6306 9.6369 1.8869 22 6 -2.9231 9.9168 1.6415 23 6 -2.9431 10.9124 0.6378 24 6 -1.6616 11.1817 0.3304 25 8 -0.8710 10.4061 1.0901 26 6 -0.5378 4.5532 1.4554 27 6 0.7208 3.8724 0.8963 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 5.0546 3.3942 -0.7866 34 1 3.1604 2.7645 1.0868 35 1 2.7232 1.2841 1.9730 36 1 0.3230 2.0240 1.9290 37 1 2.2764 4.0471 3.1165 38 1 1.7975 2.5093 3.8749 39 1 0.4898 4.4853 4.7327 40 1 -0.5405 3.2418 3.9810 41 1 -1.9474 6.9446 1.8310 42 1 -0.2723 7.3444 1.3810 43 1 -0.1510 8.9528 3.2648 44 1 -1.8261 8.5525 3.7143 45 1 -3.7810 9.4668 2.1188 46 1 -3.8192 11.3697 0.2022 47 1 -1.3254 11.8993 -0.4034 48 1 -1.3701 3.8494 1.4503 49 1 -0.7869 5.4214 0.8454 50 1 1.5284 4.6006 0.8214 51 1 0.5050 3.4655 -0.0917 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700342589.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:06 Heat of formation + Delta-G solvation = -29.850396 kcal Electronic energy + Delta-G solvation = -29786.980890 eV Core-core repulsion = 25880.491751 eV Total energy + Delta-G solvation = -3906.489139 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.48633 -41.24758 -39.10073 -37.27197 -35.18008 -34.14511 -33.73520 -33.66436 -32.01051 -30.57001 -29.83703 -28.24064 -26.16279 -25.40925 -23.99666 -23.58403 -22.65962 -22.01090 -21.41483 -21.06448 -19.83246 -18.62699 -18.48770 -17.73321 -17.15786 -16.85503 -16.75032 -16.60060 -15.80270 -15.54449 -15.51996 -15.17453 -14.93324 -14.73376 -14.45936 -14.28732 -14.00181 -13.79746 -13.71358 -13.65640 -13.49430 -13.23878 -13.11557 -12.99965 -12.93501 -12.87553 -12.62381 -12.27911 -12.18639 -12.09850 -12.03212 -11.89175 -11.62429 -11.55223 -11.18681 -10.99022 -10.85864 -10.77934 -10.40093 -9.61675 -9.38120 -8.46063 -7.74391 -5.36206 0.78462 1.44409 1.48734 1.54094 1.57291 1.70565 1.98011 2.21317 2.53368 3.29668 3.43611 3.72195 3.86358 3.88547 3.99550 4.01915 4.14319 4.16892 4.22135 4.25335 4.31083 4.42624 4.47920 4.51198 4.61277 4.67867 4.72279 4.84516 4.85217 4.89582 4.92034 4.93400 4.95117 4.96996 5.07175 5.14092 5.17100 5.24570 5.26286 5.36878 5.40368 5.45832 5.53383 5.63917 5.66912 5.73160 5.80747 5.96872 6.23218 6.41642 6.54034 7.11984 7.26027 7.96665 8.49653 9.19603 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011111 B = 0.003323 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.333096 B = 8423.433699 C = 9868.446209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.135 3.865 3 N -0.598 5.598 4 C -0.244 4.244 5 H 0.055 0.945 6 C -0.026 4.026 7 N -0.919 5.919 8 Si 0.934 3.066 9 H -0.283 1.283 10 H -0.303 1.303 11 H -0.267 1.267 12 C 0.155 3.845 13 C -0.088 4.088 14 C -0.120 4.120 15 C 0.118 3.882 16 N -0.607 5.607 17 C 0.513 3.487 18 O -0.584 6.584 19 C -0.130 4.130 20 C -0.017 4.017 21 C -0.029 4.029 22 C -0.212 4.212 23 C -0.225 4.225 24 C -0.050 4.050 25 O -0.199 6.199 26 C 0.110 3.890 27 C -0.109 4.109 28 H 0.051 0.949 29 H 0.038 0.962 30 H 0.060 0.940 31 H 0.026 0.974 32 H 0.040 0.960 33 H 0.246 0.754 34 H 0.055 0.945 35 H 0.018 0.982 36 H 0.069 0.931 37 H 0.038 0.962 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.122 0.878 42 H 0.095 0.905 43 H 0.072 0.928 44 H 0.107 0.893 45 H 0.164 0.836 46 H 0.170 0.830 47 H 0.231 0.769 48 H 0.089 0.911 49 H 0.096 0.904 50 H 0.025 0.975 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.985 9.518 4.967 19.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.010 3.990 3 N -0.319 5.319 4 C -0.375 4.375 5 H 0.073 0.927 6 C -0.224 4.224 7 N -0.563 5.563 8 Si 0.763 3.237 9 H -0.209 1.209 10 H -0.230 1.230 11 H -0.191 1.191 12 C 0.029 3.971 13 C -0.108 4.108 14 C -0.159 4.159 15 C -0.004 4.004 16 N -0.339 5.339 17 C 0.303 3.697 18 O -0.465 6.465 19 C -0.170 4.170 20 C -0.054 4.054 21 C -0.079 4.079 22 C -0.231 4.231 23 C -0.243 4.243 24 C -0.116 4.116 25 O -0.097 6.097 26 C -0.012 4.012 27 C -0.147 4.147 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.044 0.956 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.037 0.963 36 H 0.088 0.912 37 H 0.057 0.943 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.140 0.860 42 H 0.114 0.886 43 H 0.091 0.909 44 H 0.126 0.874 45 H 0.182 0.818 46 H 0.187 0.813 47 H 0.248 0.752 48 H 0.107 0.893 49 H 0.114 0.886 50 H 0.044 0.956 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.394 9.715 5.528 19.024 hybrid contribution 0.648 0.706 -0.910 1.321 sum -14.746 10.420 4.618 18.637 Atomic orbital electron populations 1.22154 0.97191 1.00560 1.00925 1.20962 0.93876 0.85938 0.98270 1.43974 1.76327 1.09314 1.02309 1.19035 1.03446 1.20443 0.94580 0.92743 1.25627 0.94104 1.03151 0.99478 1.70133 1.03722 1.38064 1.44412 0.85782 0.76415 0.81179 0.80328 1.20916 1.22992 1.19144 1.20840 0.95478 0.95507 0.85298 1.21575 0.99438 0.96625 0.93176 1.21854 0.97027 0.99755 0.97290 1.21576 0.95996 0.90811 0.92014 1.48271 1.64333 1.08899 1.12376 1.20960 0.76965 0.82971 0.88829 1.90652 1.54286 1.79448 1.22113 1.21680 1.04632 0.92778 0.97865 1.19745 1.03167 0.88755 0.93771 1.22555 0.90232 0.97741 0.97373 1.21928 0.96703 1.02171 1.02287 1.22199 0.98556 1.01970 1.01620 1.24777 0.89683 0.98475 0.98712 1.84032 1.38980 1.43562 1.43083 1.22067 0.97855 1.00656 0.80601 1.21788 0.95934 0.96738 1.00221 0.92955 0.94292 0.92071 0.95562 0.94162 0.94425 0.92725 0.96326 0.91240 0.94283 0.90013 0.90281 0.89691 0.85989 0.88642 0.90933 0.87442 0.81842 0.81275 0.75232 0.89305 0.88609 0.95618 0.90337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.68 10.21 71.98 0.73 -3.95 16 2 C 0.14 5.29 6.44 86.38 0.56 5.84 16 3 N -0.60 -27.39 2.31 -702.01 -1.62 -29.01 16 4 C -0.24 -12.37 7.35 84.03 0.62 -11.76 16 5 H 0.05 2.77 7.92 -2.91 -0.02 2.75 16 6 C -0.03 -1.39 4.95 84.86 0.42 -0.97 16 7 N -0.92 -52.49 11.50 21.65 0.25 -52.24 16 8 Si 0.93 42.91 29.61 68.60 2.03 44.95 16 9 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 10 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 11 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 12 C 0.15 6.77 4.84 86.38 0.42 7.19 16 13 C -0.09 -3.01 2.35 -10.77 -0.03 -3.03 16 14 C -0.12 -3.69 5.36 30.67 0.16 -3.52 16 15 C 0.12 3.18 6.43 86.36 0.56 3.74 16 16 N -0.61 -16.48 2.97 -818.06 -2.43 -18.91 16 17 C 0.51 14.33 7.70 87.66 0.67 15.01 16 18 O -0.58 -19.85 15.40 -3.05 -0.05 -19.90 16 19 C -0.13 -2.81 4.03 29.85 0.12 -2.69 16 20 C -0.02 -0.37 5.04 29.85 0.15 -0.21 16 21 C -0.03 -0.65 6.57 24.83 0.16 -0.48 16 22 C -0.21 -3.99 10.81 22.19 0.24 -3.75 16 23 C -0.22 -3.79 10.91 22.19 0.24 -3.54 16 24 C -0.05 -0.87 12.09 66.97 0.81 -0.06 16 25 O -0.20 -4.76 10.65 -2.47 -0.03 -4.79 16 26 C 0.11 2.81 6.37 86.51 0.55 3.36 16 27 C -0.11 -3.77 4.97 30.82 0.15 -3.62 16 28 H 0.05 1.56 6.47 -2.39 -0.02 1.54 16 29 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.03 1.08 8.08 -2.39 -0.02 1.07 16 32 H 0.04 1.49 7.83 -2.39 -0.02 1.47 16 33 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 34 H 0.05 2.86 5.54 -2.39 -0.01 2.84 16 35 H 0.02 0.79 7.86 -2.39 -0.02 0.77 16 36 H 0.07 2.23 6.47 -2.39 -0.02 2.21 16 37 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.08 2.27 7.01 -2.38 -0.02 2.25 16 40 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.12 2.03 7.93 -2.39 -0.02 2.01 16 42 H 0.10 2.17 7.70 -2.39 -0.02 2.15 16 43 H 0.07 1.79 8.10 -2.39 -0.02 1.77 16 44 H 0.11 2.15 8.10 -2.38 -0.02 2.13 16 45 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 46 H 0.17 1.95 8.06 -2.91 -0.02 1.92 16 47 H 0.23 2.20 8.06 -2.91 -0.02 2.18 16 48 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 49 H 0.10 2.10 5.93 -2.39 -0.01 2.08 16 50 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 51 H 0.08 3.05 6.26 -2.38 -0.01 3.04 16 Total: -1.00 -65.71 400.84 5.60 -60.11 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 0.90 Total: 22.26 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: 6.55 Total: -2.47 kcal Atomic # 7 Polarization: -96.37 SS G_CDS: -3.80 Total: -100.16 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.07 Total: -24.68 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.95 kcal Total: -65.71 5.60 -60.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700342589.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.260 kcal (2) G-P(sol) polarization free energy of solvation -65.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds