Wall clock time and date at job start Tue Mar 31 2020 19:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42906 * 109.47276 * 2 1 4 4 C 1.35904 * 116.99967 * 179.97438 * 3 2 1 5 5 C 1.38857 * 119.98742 * 0.02562 * 4 3 2 6 6 C 1.38247 * 120.23867 * 179.97438 * 5 4 3 7 7 C 1.38009 * 120.20626 * 359.74046 * 6 5 4 8 8 C 1.39557 * 119.96359 * 0.51241 * 7 6 5 9 9 C 1.47864 * 120.11497 * 179.76697 * 8 7 6 10 10 O 1.21553 * 120.00026 * 179.72381 * 9 8 7 11 11 N 1.34777 * 120.00050 * 359.72688 * 9 8 7 12 12 C 1.46498 * 119.99828 * 180.27776 * 11 9 8 13 13 C 1.52996 * 109.47059 * 179.72339 * 12 11 9 14 14 C 1.53003 * 109.47301 * 179.97438 * 13 12 11 15 15 H 1.08992 * 109.47039 * 305.00167 * 14 13 12 16 16 N 1.46503 * 109.46803 * 64.99966 * 14 13 12 17 17 C 1.36938 * 119.99628 * 204.99730 * 16 14 13 18 18 H 1.08001 * 120.00307 * 0.02562 * 17 16 14 19 19 C 1.38816 * 120.00044 * 179.97438 * 17 16 14 20 20 N 1.31623 * 119.99872 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00148 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47164 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47244 * 120.00156 * 21 19 17 24 24 H 1.48497 * 109.47301 * 240.00385 * 21 19 17 25 25 C 1.53001 * 109.46949 * 184.99469 * 14 13 12 26 26 C 1.53001 * 109.47108 * 60.00539 * 25 14 13 27 27 C 1.53008 * 109.46623 * 179.97438 * 25 14 13 28 28 C 1.38460 * 119.98432 * 180.02562 * 4 3 2 29 29 H 1.09005 * 109.47372 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47458 * 299.99794 * 1 2 3 31 31 H 1.09007 * 109.47483 * 59.99710 * 1 2 3 32 32 H 1.09003 * 109.47458 * 240.00206 * 2 1 3 33 33 H 1.09001 * 109.47246 * 119.99908 * 2 1 3 34 34 H 1.08002 * 119.88085 * 359.95613 * 5 4 3 35 35 H 1.08003 * 119.89386 * 180.02562 * 6 5 4 36 36 H 1.08001 * 120.01505 * 180.26286 * 7 6 5 37 37 H 0.97001 * 119.99727 * 359.97438 * 11 9 8 38 38 H 1.09004 * 109.46963 * 299.72135 * 12 11 9 39 39 H 1.08994 * 109.47567 * 59.72287 * 12 11 9 40 40 H 1.09004 * 109.47066 * 299.99732 * 13 12 11 41 41 H 1.09000 * 109.47665 * 59.99541 * 13 12 11 42 42 H 0.97002 * 120.00479 * 25.00003 * 16 14 13 43 43 H 0.96990 * 120.00063 * 179.97438 * 20 19 17 44 44 H 1.08992 * 109.47820 * 300.00220 * 25 14 13 45 45 H 1.09000 * 109.47371 * 59.99234 * 26 25 14 46 46 H 1.08991 * 109.47521 * 179.97438 * 26 25 14 47 47 H 1.09003 * 109.46801 * 299.99631 * 26 25 14 48 48 H 1.08994 * 109.47242 * 60.00752 * 27 25 14 49 49 H 1.08998 * 109.46585 * 180.02562 * 27 25 14 50 50 H 1.09000 * 109.47084 * 300.00294 * 27 25 14 51 51 H 1.07996 * 120.10234 * 0.05016 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.1992 0.4239 0.0005 6 6 5.5706 0.5990 0.0005 7 6 6.1083 1.8700 -0.0048 8 6 5.2664 2.9830 0.0005 9 6 5.8389 4.3463 0.0000 10 8 5.1037 5.3143 -0.0004 11 7 7.1760 4.5157 -0.0001 12 6 7.7432 5.8664 0.0055 13 6 9.2706 5.7781 0.0112 14 6 9.8630 7.1888 0.0164 15 1 9.4635 7.7538 -0.8257 16 7 9.5091 7.8624 1.2683 17 6 9.4590 9.2299 1.3196 18 1 9.6800 9.8118 0.4370 19 6 9.1232 9.8682 2.5056 20 7 8.8534 9.1590 3.5811 21 14 9.0541 11.7335 2.5753 22 1 9.3964 12.2917 1.2425 23 1 7.6846 12.1644 2.9550 24 1 10.0258 12.2275 3.5838 25 6 11.3859 7.1028 -0.1036 26 6 11.7556 6.3993 -1.4111 27 6 11.9782 8.5136 -0.0990 28 6 3.8826 2.8049 0.0011 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.7841 -0.5731 0.0008 35 1 6.2231 -0.2616 0.0001 36 1 7.1800 2.0032 -0.0091 37 1 7.7627 3.7433 0.0006 38 1 7.4135 6.4026 -0.8844 39 1 7.4068 6.3981 0.8955 40 1 9.6003 5.2419 0.9011 41 1 9.6072 5.2464 -0.8788 42 1 9.3103 7.3397 2.0610 43 1 8.6191 9.6049 4.4099 44 1 11.7855 6.5378 0.7385 45 1 11.3560 6.9643 -2.2532 46 1 12.8404 6.3384 -1.4968 47 1 11.3335 5.3944 -1.4148 48 1 11.7150 9.0151 0.8322 49 1 13.0631 8.4523 -0.1849 50 1 11.5786 9.0782 -0.9414 51 1 3.2260 3.6624 0.0019 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700714175.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:08 Heat of formation + Delta-G solvation = -54.488703 kcal Electronic energy + Delta-G solvation = -28170.188463 eV Core-core repulsion = 24262.630927 eV Total energy + Delta-G solvation = -3907.557536 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.62107 -39.45108 -37.62496 -37.19987 -34.73465 -33.02779 -32.41191 -31.70775 -30.90987 -29.90603 -29.18783 -26.40206 -25.55886 -24.54101 -23.18305 -22.67602 -22.43865 -21.08858 -20.40082 -19.22427 -18.71969 -17.12072 -16.75566 -16.47756 -16.38507 -16.06349 -15.39670 -15.33965 -14.85234 -14.30427 -13.96345 -13.90686 -13.86461 -13.69512 -13.54946 -13.44202 -13.15844 -12.95130 -12.73866 -12.38538 -12.22247 -12.00633 -11.97802 -11.66374 -11.60516 -11.21431 -11.17393 -11.12126 -10.89158 -10.75533 -10.57536 -10.42514 -10.24768 -10.00787 -9.97324 -9.69371 -9.42723 -9.29427 -8.83880 -8.76551 -8.53247 -6.89895 -5.71800 -2.99284 0.63353 1.13741 2.75454 2.85321 3.35972 3.47054 3.53186 3.55098 3.72578 4.40899 4.49321 4.49667 4.63667 4.65297 4.74387 4.80659 4.87090 5.04146 5.19498 5.22749 5.32136 5.36983 5.38887 5.50602 5.57981 5.62566 5.66529 5.72326 5.73204 5.92698 5.95246 6.03397 6.05800 6.10554 6.18382 6.25301 6.28772 6.33589 6.41464 6.44522 6.57555 6.68161 6.72462 6.75573 6.84964 7.08933 7.14721 7.35213 7.63976 7.76947 8.34584 8.46417 9.57963 10.14668 10.49346 11.50756 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014534 B = 0.002196 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.990524 B =12747.371004 C =14226.583283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.054 3.946 3 O -0.314 6.314 4 C 0.122 3.878 5 C -0.190 4.190 6 C -0.087 4.087 7 C -0.126 4.126 8 C -0.087 4.087 9 C 0.551 3.449 10 O -0.528 6.528 11 N -0.721 5.721 12 C 0.122 3.878 13 C -0.136 4.136 14 C 0.186 3.814 15 H 0.049 0.951 16 N -0.721 5.721 17 C -0.230 4.230 18 H 0.072 0.928 19 C -0.014 4.014 20 N -0.931 5.931 21 Si 0.901 3.099 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.293 1.293 25 C -0.111 4.111 26 C -0.147 4.147 27 C -0.140 4.140 28 C -0.094 4.094 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.396 0.604 38 H 0.065 0.935 39 H 0.086 0.914 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.383 0.617 43 H 0.253 0.747 44 H 0.060 0.940 45 H 0.048 0.952 46 H 0.042 0.958 47 H 0.049 0.951 48 H 0.086 0.914 49 H 0.028 0.972 50 H 0.040 0.960 51 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.133 -23.424 -9.696 26.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.228 6.228 4 C 0.077 3.923 5 C -0.209 4.209 6 C -0.105 4.105 7 C -0.145 4.145 8 C -0.090 4.090 9 C 0.337 3.663 10 O -0.405 6.405 11 N -0.372 5.372 12 C -0.001 4.001 13 C -0.175 4.175 14 C 0.075 3.925 15 H 0.067 0.933 16 N -0.362 5.362 17 C -0.361 4.361 18 H 0.090 0.910 19 C -0.210 4.210 20 N -0.580 5.580 21 Si 0.733 3.267 22 H -0.206 1.206 23 H -0.220 1.220 24 H -0.221 1.221 25 C -0.133 4.133 26 C -0.204 4.204 27 C -0.198 4.198 28 C -0.114 4.114 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.230 0.770 38 H 0.083 0.917 39 H 0.105 0.895 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.217 0.783 43 H 0.063 0.937 44 H 0.078 0.922 45 H 0.067 0.933 46 H 0.062 0.938 47 H 0.068 0.932 48 H 0.105 0.895 49 H 0.048 0.952 50 H 0.059 0.941 51 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -7.829 -22.349 -9.727 25.601 hybrid contribution 0.375 0.177 0.426 0.595 sum -7.454 -22.172 -9.301 25.173 Atomic orbital electron populations 1.21783 0.92602 1.02866 1.03774 1.22806 0.96066 0.81893 1.01357 1.86114 1.18681 1.29334 1.88639 1.18821 0.82586 0.93723 0.97144 1.21403 0.94469 0.98083 1.06940 1.20865 0.94298 0.97163 0.98165 1.21232 0.99662 0.91939 1.01619 1.19816 0.93287 0.93444 1.02495 1.18157 0.82623 0.88286 0.77220 1.90820 1.59490 1.41257 1.48977 1.46022 1.06176 1.10225 1.74789 1.21499 0.93277 0.81575 1.03712 1.22138 0.93647 0.99902 1.01784 1.20185 0.91234 0.89966 0.91145 0.93272 1.42451 1.82260 1.03868 1.07607 1.19238 1.38523 0.82793 0.95591 0.90964 1.24719 1.02709 0.97509 0.96097 1.69659 1.53734 1.33785 1.00783 0.86202 0.77199 0.86103 0.77241 1.20576 1.21960 1.22054 1.21776 0.98930 0.96559 0.95989 1.21937 1.00117 0.99905 0.98488 1.21831 0.97462 0.96744 1.03721 1.20512 0.94208 0.95573 1.01080 0.90338 0.91354 0.91406 0.92000 0.91957 0.85217 0.85109 0.85303 0.76976 0.91668 0.89530 0.91618 0.91512 0.78305 0.93665 0.92198 0.93282 0.93847 0.93221 0.89494 0.95242 0.94122 0.83734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 10.28 37.15 0.38 -0.42 16 2 C 0.05 0.36 5.46 37.15 0.20 0.56 16 3 O -0.31 -3.33 10.13 -19.44 -0.20 -3.53 16 4 C 0.12 1.36 6.68 -39.27 -0.26 1.10 16 5 C -0.19 -1.65 9.03 -39.35 -0.36 -2.01 16 6 C -0.09 -0.71 10.03 -39.66 -0.40 -1.11 16 7 C -0.13 -1.21 9.54 -39.17 -0.37 -1.59 16 8 C -0.09 -1.13 5.87 -104.99 -0.62 -1.74 16 9 C 0.55 8.79 7.77 -12.32 -0.10 8.70 16 10 O -0.53 -10.78 16.35 5.32 0.09 -10.69 16 11 N -0.72 -10.01 5.51 -61.25 -0.34 -10.34 16 12 C 0.12 2.03 5.56 -4.04 -0.02 2.01 16 13 C -0.14 -2.03 4.65 -26.73 -0.12 -2.16 16 14 C 0.19 3.43 2.02 -67.93 -0.14 3.29 16 15 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 16 N -0.72 -16.98 4.45 -53.42 -0.24 -17.21 16 17 C -0.23 -6.11 7.57 -15.06 -0.11 -6.23 16 18 H 0.07 1.89 7.40 -52.49 -0.39 1.50 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 20 N -0.93 -27.91 13.06 55.49 0.72 -27.19 16 21 Si 0.90 22.52 29.55 -169.99 -5.02 17.50 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 23 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 24 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 25 C -0.11 -1.87 2.69 -90.61 -0.24 -2.12 16 26 C -0.15 -1.97 8.85 37.16 0.33 -1.64 16 27 C -0.14 -2.57 8.26 37.16 0.31 -2.26 16 28 C -0.09 -1.24 9.53 -39.02 -0.37 -1.61 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 33 H 0.06 0.34 7.66 -51.93 -0.40 -0.05 16 34 H 0.13 0.79 6.28 -52.49 -0.33 0.46 16 35 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 36 H 0.13 0.94 6.40 -52.49 -0.34 0.60 16 37 H 0.40 4.09 6.50 -40.82 -0.27 3.82 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.09 1.80 7.75 -51.93 -0.40 1.40 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.07 0.82 6.17 -51.93 -0.32 0.50 16 42 H 0.38 9.76 7.80 -40.82 -0.32 9.44 16 43 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.05 0.59 6.32 -51.93 -0.33 0.26 16 48 H 0.09 1.89 6.01 -51.93 -0.31 1.58 16 49 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.14 2.06 7.65 -52.49 -0.40 1.66 16 LS Contribution 409.13 15.07 6.17 6.17 Total: -1.00 -32.88 409.13 -9.21 -42.09 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -8.40 Total: 10.95 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -1.99 Total: -7.74 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: 0.15 Total: -54.75 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -0.11 Total: -14.22 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.88 -9.21 -42.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700714175.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.397 kcal (2) G-P(sol) polarization free energy of solvation -32.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds