Wall clock time and date at job start Tue Mar 31 2020 18:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53008 * 109.47197 * 2 1 4 4 N 1.46504 * 109.47290 * 119.99772 * 2 1 3 5 5 C 1.46503 * 119.99797 * 116.15084 * 4 2 1 6 6 C 1.52998 * 109.47330 * 84.38364 * 5 4 2 7 7 N 1.46496 * 109.47102 * 180.02562 * 6 5 4 8 8 C 1.46495 * 120.00256 * 89.99868 * 7 6 5 9 9 C 1.36940 * 119.99537 * 269.99741 * 7 6 5 10 10 H 1.08008 * 119.99560 * 138.47006 * 9 7 6 11 11 C 1.38809 * 120.00488 * 318.46620 * 9 7 6 12 12 N 1.31614 * 120.00171 * 166.53429 * 11 9 7 13 13 Si 1.86800 * 119.99557 * 346.54088 * 11 9 7 14 14 H 1.48493 * 109.47548 * 95.28470 * 13 11 9 15 15 H 1.48505 * 109.46843 * 215.28505 * 13 11 9 16 16 H 1.48501 * 109.47438 * 335.28195 * 13 11 9 17 17 C 1.34768 * 119.99964 * 296.15162 * 4 2 1 18 18 O 1.21282 * 120.00301 * 4.74783 * 17 4 2 19 19 C 1.50705 * 120.00026 * 184.74420 * 17 4 2 20 20 H 1.09012 * 109.46707 * 41.28057 * 19 17 4 21 21 C 1.52997 * 109.47198 * 281.28256 * 19 17 4 22 22 O 1.42896 * 109.47508 * 161.27496 * 19 17 4 23 23 C 1.35891 * 117.00401 * 202.73506 * 22 19 17 24 24 C 1.38734 * 120.05701 * 176.47788 * 23 22 19 25 25 C 1.38147 * 119.94532 * 179.74078 * 24 23 22 26 26 C 1.38264 * 120.05549 * 0.51294 * 25 24 23 27 27 C 1.38275 * 120.11014 * 359.76007 * 26 25 24 28 28 C 1.38144 * 120.05336 * 359.97438 * 27 26 25 29 29 H 1.08997 * 109.47580 * 297.93518 * 1 2 3 30 30 H 1.09005 * 109.47379 * 57.94189 * 1 2 3 31 31 H 1.09000 * 109.46821 * 177.93613 * 1 2 3 32 32 H 1.09002 * 109.47415 * 240.00604 * 2 1 3 33 33 H 1.08993 * 109.47060 * 183.90555 * 3 2 1 34 34 H 1.09001 * 109.46762 * 303.90754 * 3 2 1 35 35 H 1.09001 * 109.46679 * 63.90188 * 3 2 1 36 36 H 1.09003 * 109.46975 * 204.38425 * 5 4 2 37 37 H 1.09004 * 109.47066 * 324.38327 * 5 4 2 38 38 H 1.09007 * 109.46653 * 300.00007 * 6 5 4 39 39 H 1.08993 * 109.47139 * 59.99452 * 6 5 4 40 40 H 1.09004 * 109.47044 * 95.02990 * 8 7 6 41 41 H 1.09003 * 109.47254 * 215.02869 * 8 7 6 42 42 H 1.09002 * 109.47314 * 335.02823 * 8 7 6 43 43 H 0.97001 * 119.99866 * 180.02562 * 12 11 9 44 44 H 1.08997 * 109.47651 * 52.09554 * 21 19 17 45 45 H 1.09003 * 109.46762 * 172.09560 * 21 19 17 46 46 H 1.08998 * 109.46799 * 292.09040 * 21 19 17 47 47 H 1.08005 * 120.02850 * 359.97438 * 24 23 22 48 48 H 1.07997 * 119.97332 * 180.26997 * 25 24 23 49 49 H 1.07994 * 119.94867 * 179.74479 * 26 25 24 50 50 H 1.07995 * 119.97214 * 179.97438 * 27 26 25 51 51 H 1.07997 * 120.02497 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.7897 -1.9290 1.0634 6 6 4.2617 -1.5895 0.8210 7 7 5.0329 -2.8278 0.6876 8 6 5.2111 -3.4414 -0.6306 9 6 5.5872 -3.4118 1.7953 10 1 5.5504 -4.4845 1.9158 11 6 6.1965 -2.6252 2.7632 12 7 6.4910 -3.1385 3.9388 13 14 6.5984 -0.8381 2.3972 14 1 5.5018 0.0286 2.8983 15 1 7.8689 -0.4684 3.0713 16 1 6.7443 -0.6537 0.9309 17 6 1.7579 -0.1866 2.4187 18 8 1.0476 0.7897 2.5335 19 6 2.3495 -0.8362 3.6432 20 1 3.3834 -1.1169 3.4419 21 6 1.5416 -2.0861 3.9981 22 8 2.3097 0.0831 4.7364 23 6 3.1915 -0.1243 5.7494 24 6 3.2580 0.7710 6.8070 25 6 4.1516 0.5551 7.8382 26 6 4.9866 -0.5466 7.8116 27 6 4.9263 -1.4374 6.7558 28 6 4.0306 -1.2288 5.7249 29 1 -0.3634 0.4814 0.9079 30 1 -0.3634 0.5455 -0.8710 31 1 -0.3633 -1.0270 -0.0370 32 1 1.8933 -0.5137 -0.8900 33 1 3.1276 1.4433 -0.0700 34 1 1.6205 1.9762 -0.8529 35 1 1.7348 1.9358 0.9229 36 1 2.6977 -2.5142 1.9784 37 1 2.4069 -2.5071 0.2223 38 1 4.3536 -1.0042 -0.0940 39 1 4.6445 -1.0113 1.6620 40 1 6.1579 -3.1129 -1.0593 41 1 5.2156 -4.5267 -0.5287 42 1 4.3924 -3.1414 -1.2848 43 1 6.9164 -2.5887 4.6153 44 1 1.4539 -2.7240 3.1186 45 1 2.0481 -2.6322 4.7939 46 1 0.5473 -1.7926 4.3347 47 1 2.6091 1.6342 6.8261 48 1 4.2007 1.2495 8.6639 49 1 5.6874 -0.7115 8.6166 50 1 5.5798 -2.2970 6.7371 51 1 3.9841 -1.9247 4.9003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700976352.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:49 Heat of formation + Delta-G solvation = -10.872712 kcal Electronic energy + Delta-G solvation = -31664.719022 eV Core-core repulsion = 27759.052817 eV Total energy + Delta-G solvation = -3905.666205 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.61882 -39.40780 -37.16549 -36.58378 -35.32382 -33.27228 -31.85395 -31.10451 -30.33295 -29.30003 -28.41275 -27.07667 -26.25847 -24.80889 -23.29576 -22.76553 -22.19497 -21.15616 -20.91582 -18.65875 -18.08599 -16.90023 -16.83612 -16.15719 -15.60564 -15.43363 -15.31897 -15.23802 -14.52147 -14.31018 -13.99497 -13.78730 -13.60474 -13.34174 -13.28423 -13.15742 -13.08897 -12.79600 -12.56992 -12.39356 -12.13572 -12.08867 -11.95957 -11.79803 -11.64212 -11.59787 -11.23618 -11.15256 -11.08787 -10.93591 -10.75668 -10.67063 -10.58481 -10.39120 -9.95195 -9.67408 -9.20798 -8.75586 -8.63318 -8.52209 -7.87980 -6.90958 -6.12543 -3.64503 1.69206 1.76378 2.64200 2.88005 3.18339 3.38105 3.38638 3.70071 4.13619 4.35616 4.51317 4.99296 5.01563 5.07820 5.15385 5.17252 5.22857 5.24529 5.26727 5.28843 5.38049 5.49431 5.60785 5.70597 5.73070 5.73836 5.74917 5.80996 5.86382 5.92026 5.95679 6.00842 6.02054 6.12138 6.15625 6.24207 6.32462 6.37975 6.40372 6.42467 6.59983 6.61557 6.65194 6.79542 6.84739 6.93673 7.09105 7.52302 7.70927 7.93525 8.24513 8.35878 8.81503 9.53710 9.95107 11.00899 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009156 B = 0.006608 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3057.518325 B = 4236.282003 C = 6295.661454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.146 3.854 3 C -0.173 4.173 4 N -0.603 5.603 5 C 0.075 3.925 6 C 0.123 3.877 7 N -0.611 5.611 8 C 0.126 3.874 9 C -0.275 4.275 10 H 0.083 0.917 11 C 0.044 3.956 12 N -0.893 5.893 13 Si 0.873 3.127 14 H -0.285 1.285 15 H -0.300 1.300 16 H -0.271 1.271 17 C 0.529 3.471 18 O -0.523 6.523 19 C 0.061 3.939 20 H 0.106 0.894 21 C -0.174 4.174 22 O -0.291 6.291 23 C 0.123 3.877 24 C -0.158 4.158 25 C -0.090 4.090 26 C -0.165 4.165 27 C -0.067 4.067 28 C -0.194 4.194 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.087 0.913 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.044 0.956 39 H 0.050 0.950 40 H 0.010 0.990 41 H 0.041 0.959 42 H 0.030 0.970 43 H 0.265 0.735 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.071 0.929 47 H 0.125 0.875 48 H 0.123 0.877 49 H 0.119 0.881 50 H 0.133 0.867 51 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.265 3.810 -1.264 9.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.044 3.956 3 C -0.231 4.231 4 N -0.338 5.338 5 C -0.050 4.050 6 C -0.004 4.004 7 N -0.336 5.336 8 C -0.019 4.019 9 C -0.404 4.404 10 H 0.100 0.900 11 C -0.158 4.158 12 N -0.534 5.534 13 Si 0.704 3.296 14 H -0.214 1.214 15 H -0.228 1.228 16 H -0.196 1.196 17 C 0.315 3.685 18 O -0.399 6.399 19 C 0.001 3.999 20 H 0.124 0.876 21 C -0.231 4.231 22 O -0.204 6.204 23 C 0.078 3.922 24 C -0.177 4.177 25 C -0.108 4.108 26 C -0.184 4.184 27 C -0.085 4.085 28 C -0.213 4.213 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.094 0.906 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.029 0.971 41 H 0.060 0.940 42 H 0.049 0.951 43 H 0.075 0.925 44 H 0.100 0.900 45 H 0.098 0.902 46 H 0.090 0.910 47 H 0.143 0.857 48 H 0.141 0.859 49 H 0.137 0.863 50 H 0.151 0.849 51 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.690 4.474 -1.092 9.834 hybrid contribution 0.659 0.771 -0.270 1.050 sum -8.031 5.245 -1.363 9.688 Atomic orbital electron populations 1.22195 0.95040 1.01904 1.03335 1.20996 0.94390 0.93386 0.86858 1.22242 1.01054 0.96141 1.03697 1.48098 1.54329 1.26484 1.04911 1.22827 0.93436 0.84774 1.03951 1.21574 0.89557 0.89909 0.99377 1.43983 1.58465 1.27014 1.04137 1.21100 0.97242 0.97275 0.86332 1.18830 1.31489 0.93467 0.96592 0.89952 1.25476 0.96559 0.97417 0.96309 1.69763 1.43445 1.36401 1.03788 0.87012 0.77304 0.86608 0.78669 1.21351 1.22753 1.19614 1.19997 0.80713 0.83871 0.83880 1.90599 1.36882 1.26329 1.86137 1.22314 1.02519 0.89731 0.85344 0.87626 1.22360 1.00965 0.95964 1.03818 1.86101 1.54504 1.51815 1.27971 1.19142 0.89975 0.94506 0.88590 1.20334 1.02893 1.00250 0.94196 1.20854 0.95149 0.97411 0.97403 1.21074 1.01287 0.96254 0.99738 1.21127 0.96317 0.98751 0.92348 1.21612 0.98821 0.98996 1.01836 0.90495 0.92066 0.92823 0.89525 0.92761 0.91897 0.90146 0.88925 0.90555 0.93759 0.93231 0.97128 0.93984 0.95100 0.92482 0.89952 0.90207 0.91048 0.85687 0.85899 0.86269 0.84938 0.84010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 9.20 37.15 0.34 -1.74 16 2 C 0.15 2.01 3.27 -67.93 -0.22 1.79 16 3 C -0.17 -2.44 9.12 37.16 0.34 -2.10 16 4 N -0.60 -9.75 2.42 -166.10 -0.40 -10.15 16 5 C 0.07 1.23 5.15 -4.04 -0.02 1.21 16 6 C 0.12 2.42 4.54 -4.04 -0.02 2.40 16 7 N -0.61 -13.17 2.46 -181.12 -0.45 -13.61 16 8 C 0.13 2.27 10.69 59.84 0.64 2.91 16 9 C -0.27 -6.92 9.98 -15.06 -0.15 -7.07 16 10 H 0.08 2.25 8.06 -52.48 -0.42 1.82 16 11 C 0.04 1.15 5.42 -17.43 -0.09 1.05 16 12 N -0.89 -24.01 13.97 55.49 0.78 -23.24 16 13 Si 0.87 21.62 24.69 -169.99 -4.20 17.43 16 14 H -0.29 -7.09 6.81 56.52 0.39 -6.71 16 15 H -0.30 -7.69 7.11 56.52 0.40 -7.28 16 16 H -0.27 -6.69 6.97 56.52 0.39 -6.29 16 17 C 0.53 9.71 6.35 -10.99 -0.07 9.64 16 18 O -0.52 -10.50 12.80 -13.62 -0.17 -10.68 16 19 C 0.06 1.12 1.81 -27.88 -0.05 1.07 16 20 H 0.11 2.19 4.80 -51.92 -0.25 1.94 16 21 C -0.17 -2.72 8.76 37.16 0.33 -2.39 16 22 O -0.29 -5.74 9.41 -38.57 -0.36 -6.10 16 23 C 0.12 2.32 6.58 -39.22 -0.26 2.06 16 24 C -0.16 -2.60 9.99 -39.43 -0.39 -3.00 16 25 C -0.09 -1.31 10.04 -39.60 -0.40 -1.70 16 26 C -0.17 -2.51 10.04 -39.56 -0.40 -2.90 16 27 C -0.07 -1.19 10.04 -39.60 -0.40 -1.59 16 28 C -0.19 -3.73 8.25 -39.43 -0.33 -4.06 16 29 H 0.08 1.14 6.25 -51.93 -0.32 0.82 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 1.04 7.90 -51.93 -0.41 0.63 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 1.33 5.95 -51.93 -0.31 1.02 16 36 H 0.09 1.61 4.48 -51.93 -0.23 1.38 16 37 H 0.08 1.11 8.07 -51.93 -0.42 0.69 16 38 H 0.04 0.82 8.07 -51.93 -0.42 0.40 16 39 H 0.05 1.11 2.38 -51.93 -0.12 0.99 16 40 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 41 H 0.04 0.74 8.08 -51.93 -0.42 0.32 16 42 H 0.03 0.46 8.03 -51.93 -0.42 0.04 16 43 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 44 H 0.08 1.18 6.10 -51.93 -0.32 0.87 16 45 H 0.08 1.24 6.75 -51.93 -0.35 0.89 16 46 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.13 1.86 8.06 -52.48 -0.42 1.44 16 48 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 49 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 50 H 0.13 2.33 8.06 -52.49 -0.42 1.91 16 51 H 0.14 2.95 5.31 -52.49 -0.28 2.67 16 LS Contribution 395.51 15.07 5.96 5.96 Total: -1.00 -29.15 395.51 -8.08 -37.23 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -8.08 Total: 7.58 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -1.15 Total: -4.42 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: -0.07 Total: -47.00 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.54 Total: -16.78 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.20 Total: 17.43 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -29.15 -8.08 -37.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700976352.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.356 kcal (2) G-P(sol) polarization free energy of solvation -29.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds