Wall clock time and date at job start Tue Mar 31 2020 18:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53008 * 109.47197 * 2 1 4 4 N 1.46504 * 109.47290 * 119.99772 * 2 1 3 5 5 C 1.46503 * 119.99797 * 116.15084 * 4 2 1 6 6 C 1.52998 * 109.47330 * 84.38364 * 5 4 2 7 7 N 1.46496 * 109.47102 * 180.02562 * 6 5 4 8 8 C 1.46495 * 120.00256 * 89.99868 * 7 6 5 9 9 C 1.36940 * 119.99537 * 269.99741 * 7 6 5 10 10 H 1.08008 * 119.99560 * 138.47006 * 9 7 6 11 11 C 1.38809 * 120.00488 * 318.46620 * 9 7 6 12 12 N 1.31614 * 120.00171 * 166.53429 * 11 9 7 13 13 Si 1.86800 * 119.99557 * 346.54088 * 11 9 7 14 14 H 1.48493 * 109.47548 * 95.28470 * 13 11 9 15 15 H 1.48505 * 109.46843 * 215.28505 * 13 11 9 16 16 H 1.48501 * 109.47438 * 335.28195 * 13 11 9 17 17 C 1.34768 * 119.99964 * 296.15162 * 4 2 1 18 18 O 1.21282 * 120.00301 * 4.74783 * 17 4 2 19 19 C 1.50705 * 120.00026 * 184.74420 * 17 4 2 20 20 H 1.09012 * 109.46707 * 41.28057 * 19 17 4 21 21 C 1.52997 * 109.47198 * 281.28256 * 19 17 4 22 22 O 1.42896 * 109.47508 * 161.27496 * 19 17 4 23 23 C 1.35891 * 117.00401 * 202.73506 * 22 19 17 24 24 C 1.38734 * 120.05701 * 176.47788 * 23 22 19 25 25 C 1.38147 * 119.94532 * 179.74078 * 24 23 22 26 26 C 1.38264 * 120.05549 * 0.51294 * 25 24 23 27 27 C 1.38275 * 120.11014 * 359.76007 * 26 25 24 28 28 C 1.38144 * 120.05336 * 359.97438 * 27 26 25 29 29 H 1.08997 * 109.47580 * 297.93518 * 1 2 3 30 30 H 1.09005 * 109.47379 * 57.94189 * 1 2 3 31 31 H 1.09000 * 109.46821 * 177.93613 * 1 2 3 32 32 H 1.09002 * 109.47415 * 240.00604 * 2 1 3 33 33 H 1.08993 * 109.47060 * 183.90555 * 3 2 1 34 34 H 1.09001 * 109.46762 * 303.90754 * 3 2 1 35 35 H 1.09001 * 109.46679 * 63.90188 * 3 2 1 36 36 H 1.09003 * 109.46975 * 204.38425 * 5 4 2 37 37 H 1.09004 * 109.47066 * 324.38327 * 5 4 2 38 38 H 1.09007 * 109.46653 * 300.00007 * 6 5 4 39 39 H 1.08993 * 109.47139 * 59.99452 * 6 5 4 40 40 H 1.09004 * 109.47044 * 95.02990 * 8 7 6 41 41 H 1.09003 * 109.47254 * 215.02869 * 8 7 6 42 42 H 1.09002 * 109.47314 * 335.02823 * 8 7 6 43 43 H 0.97001 * 119.99866 * 180.02562 * 12 11 9 44 44 H 1.08997 * 109.47651 * 52.09554 * 21 19 17 45 45 H 1.09003 * 109.46762 * 172.09560 * 21 19 17 46 46 H 1.08998 * 109.46799 * 292.09040 * 21 19 17 47 47 H 1.08005 * 120.02850 * 359.97438 * 24 23 22 48 48 H 1.07997 * 119.97332 * 180.26997 * 25 24 23 49 49 H 1.07994 * 119.94867 * 179.74479 * 26 25 24 50 50 H 1.07995 * 119.97214 * 179.97438 * 27 26 25 51 51 H 1.07997 * 120.02497 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.7897 -1.9290 1.0634 6 6 4.2617 -1.5895 0.8210 7 7 5.0329 -2.8278 0.6876 8 6 5.2111 -3.4414 -0.6306 9 6 5.5872 -3.4118 1.7953 10 1 5.5504 -4.4845 1.9158 11 6 6.1965 -2.6252 2.7632 12 7 6.4910 -3.1385 3.9388 13 14 6.5984 -0.8381 2.3972 14 1 5.5018 0.0286 2.8983 15 1 7.8689 -0.4684 3.0713 16 1 6.7443 -0.6537 0.9309 17 6 1.7579 -0.1866 2.4187 18 8 1.0476 0.7897 2.5335 19 6 2.3495 -0.8362 3.6432 20 1 3.3834 -1.1169 3.4419 21 6 1.5416 -2.0861 3.9981 22 8 2.3097 0.0831 4.7364 23 6 3.1915 -0.1243 5.7494 24 6 3.2580 0.7710 6.8070 25 6 4.1516 0.5551 7.8382 26 6 4.9866 -0.5466 7.8116 27 6 4.9263 -1.4374 6.7558 28 6 4.0306 -1.2288 5.7249 29 1 -0.3634 0.4814 0.9079 30 1 -0.3634 0.5455 -0.8710 31 1 -0.3633 -1.0270 -0.0370 32 1 1.8933 -0.5137 -0.8900 33 1 3.1276 1.4433 -0.0700 34 1 1.6205 1.9762 -0.8529 35 1 1.7348 1.9358 0.9229 36 1 2.6977 -2.5142 1.9784 37 1 2.4069 -2.5071 0.2223 38 1 4.3536 -1.0042 -0.0940 39 1 4.6445 -1.0113 1.6620 40 1 6.1579 -3.1129 -1.0593 41 1 5.2156 -4.5267 -0.5287 42 1 4.3924 -3.1414 -1.2848 43 1 6.9164 -2.5887 4.6153 44 1 1.4539 -2.7240 3.1186 45 1 2.0481 -2.6322 4.7939 46 1 0.5473 -1.7926 4.3347 47 1 2.6091 1.6342 6.8261 48 1 4.2007 1.2495 8.6639 49 1 5.6874 -0.7115 8.6166 50 1 5.5798 -2.2970 6.7371 51 1 3.9841 -1.9247 4.9003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700976352.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:48 Heat of formation + Delta-G solvation = -25.600345 kcal Electronic energy + Delta-G solvation = -31665.357660 eV Core-core repulsion = 27759.052817 eV Total energy + Delta-G solvation = -3906.304843 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.00257 -40.75355 -38.51694 -38.14929 -36.76780 -34.59450 -33.74117 -32.46386 -31.64336 -30.62920 -29.85876 -28.12082 -27.98545 -26.20201 -24.82061 -24.05522 -23.49967 -22.70901 -22.33656 -20.01517 -19.46513 -18.76940 -18.22373 -17.51958 -17.23194 -16.87640 -16.71966 -16.54421 -15.97254 -15.66522 -15.54041 -15.16060 -14.97912 -14.93023 -14.69288 -14.58743 -14.41846 -14.21960 -13.96099 -13.70671 -13.60148 -13.48124 -13.36862 -13.08890 -13.06939 -12.82201 -12.76673 -12.51020 -12.47176 -12.29100 -12.16840 -12.09174 -12.07940 -11.76194 -11.74113 -11.47759 -10.73579 -10.58768 -9.95598 -9.91070 -9.23068 -8.67417 -8.16763 -5.62828 0.37991 0.43395 1.18286 1.24548 1.31978 1.36437 1.53650 2.32656 2.35269 2.81935 3.06180 3.20224 3.50512 3.65917 3.77470 3.89084 3.91064 3.97711 4.00938 4.08986 4.26234 4.30170 4.31988 4.34751 4.42244 4.48913 4.52643 4.56532 4.58997 4.72412 4.74201 4.77486 4.81750 4.84952 4.90408 4.94254 5.01882 5.08085 5.14200 5.19422 5.21871 5.34278 5.35212 5.49184 5.61512 5.63864 5.80871 5.98098 6.17495 6.23032 6.32661 6.96100 7.00141 7.60833 8.05246 8.99727 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009156 B = 0.006608 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3057.518325 B = 4236.282003 C = 6295.661454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.137 3.863 3 C -0.170 4.170 4 N -0.596 5.596 5 C 0.086 3.914 6 C 0.121 3.879 7 N -0.623 5.623 8 C 0.123 3.877 9 C -0.258 4.258 10 H 0.057 0.943 11 C 0.013 3.987 12 N -0.920 5.920 13 Si 0.917 3.083 14 H -0.297 1.297 15 H -0.316 1.316 16 H -0.266 1.266 17 C 0.526 3.474 18 O -0.544 6.544 19 C 0.061 3.939 20 H 0.079 0.921 21 C -0.164 4.164 22 O -0.308 6.308 23 C 0.099 3.901 24 C -0.164 4.164 25 C -0.078 4.078 26 C -0.158 4.158 27 C -0.085 4.085 28 C -0.211 4.211 29 H 0.048 0.952 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.117 0.883 33 H 0.043 0.957 34 H 0.092 0.908 35 H 0.049 0.951 36 H 0.080 0.920 37 H 0.109 0.891 38 H 0.063 0.937 39 H 0.019 0.981 40 H 0.008 0.992 41 H 0.043 0.957 42 H 0.069 0.931 43 H 0.262 0.738 44 H 0.095 0.905 45 H 0.072 0.928 46 H 0.079 0.921 47 H 0.140 0.860 48 H 0.167 0.833 49 H 0.152 0.848 50 H 0.123 0.877 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.260 4.543 -2.442 10.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.036 3.964 3 C -0.228 4.228 4 N -0.330 5.330 5 C -0.039 4.039 6 C -0.005 4.005 7 N -0.348 5.348 8 C -0.021 4.021 9 C -0.388 4.388 10 H 0.075 0.925 11 C -0.186 4.186 12 N -0.563 5.563 13 Si 0.750 3.250 14 H -0.226 1.226 15 H -0.246 1.246 16 H -0.190 1.190 17 C 0.312 3.688 18 O -0.422 6.422 19 C 0.001 3.999 20 H 0.097 0.903 21 C -0.221 4.221 22 O -0.221 6.221 23 C 0.054 3.946 24 C -0.183 4.183 25 C -0.095 4.095 26 C -0.176 4.176 27 C -0.104 4.104 28 C -0.230 4.230 29 H 0.067 0.933 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.135 0.865 33 H 0.062 0.938 34 H 0.111 0.889 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.128 0.872 38 H 0.081 0.919 39 H 0.037 0.963 40 H 0.026 0.974 41 H 0.062 0.938 42 H 0.088 0.912 43 H 0.072 0.928 44 H 0.113 0.887 45 H 0.091 0.909 46 H 0.098 0.902 47 H 0.158 0.842 48 H 0.184 0.816 49 H 0.170 0.830 50 H 0.141 0.859 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.695 5.202 -2.323 11.245 hybrid contribution 0.974 0.538 0.084 1.116 sum -8.720 5.740 -2.239 10.677 Atomic orbital electron populations 1.22116 0.93848 1.02601 1.03078 1.21353 0.95394 0.93121 0.86534 1.22209 1.00511 0.96657 1.03421 1.48141 1.53526 1.26285 1.05047 1.22624 0.91652 0.84915 1.04681 1.21574 0.91025 0.88950 0.98967 1.44105 1.58857 1.27341 1.04498 1.21233 0.98685 0.97224 0.84942 1.18689 1.30209 0.92380 0.97506 0.92510 1.25761 0.97467 0.98907 0.96507 1.69818 1.45055 1.37020 1.04406 0.86320 0.75640 0.84762 0.78261 1.22576 1.24580 1.19030 1.20035 0.80596 0.83631 0.84497 1.90589 1.37995 1.27114 1.86521 1.22331 1.01386 0.90603 0.85570 0.90308 1.22291 1.00719 0.94968 1.04136 1.86056 1.55075 1.52532 1.28476 1.19438 0.90487 0.95328 0.89362 1.20719 1.03496 1.00147 0.93895 1.21337 0.93257 0.97387 0.97558 1.21450 1.01410 0.95392 0.99327 1.21207 0.96344 0.99561 0.93250 1.21464 1.00271 0.99312 1.01937 0.93316 0.89471 0.91859 0.86549 0.93751 0.88910 0.93166 0.90199 0.87244 0.91863 0.96292 0.97366 0.93801 0.91236 0.92762 0.88694 0.90896 0.90223 0.84172 0.81556 0.83003 0.85861 0.86525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.53 9.20 71.98 0.66 -2.86 16 2 C 0.14 3.40 3.27 44.99 0.15 3.54 16 3 C -0.17 -4.49 9.12 71.98 0.66 -3.84 16 4 N -0.60 -18.48 2.42 -797.82 -1.93 -20.42 16 5 C 0.09 2.68 5.15 86.38 0.45 3.13 16 6 C 0.12 4.61 4.54 86.38 0.39 5.00 16 7 N -0.62 -26.03 2.46 -726.94 -1.79 -27.82 16 8 C 0.12 4.11 10.69 127.77 1.37 5.48 16 9 C -0.26 -13.11 9.98 84.03 0.84 -12.27 16 10 H 0.06 3.17 8.06 -2.91 -0.02 3.15 16 11 C 0.01 0.67 5.42 84.86 0.46 1.13 16 12 N -0.92 -51.42 13.97 21.65 0.30 -51.11 16 13 Si 0.92 46.09 24.69 68.60 1.69 47.78 16 14 H -0.30 -15.30 6.81 99.48 0.68 -14.62 16 15 H -0.32 -16.52 7.11 99.48 0.71 -15.82 16 16 H -0.27 -12.86 6.97 99.48 0.69 -12.17 16 17 C 0.53 19.48 6.35 87.66 0.56 20.04 16 18 O -0.54 -22.19 12.80 15.30 0.20 -22.00 16 19 C 0.06 2.34 1.81 29.85 0.05 2.40 16 20 H 0.08 3.47 4.80 -2.38 -0.01 3.46 16 21 C -0.16 -5.31 8.76 71.98 0.63 -4.67 16 22 O -0.31 -12.65 9.41 -73.99 -0.70 -13.34 16 23 C 0.10 3.84 6.58 22.51 0.15 3.99 16 24 C -0.16 -5.29 9.99 22.37 0.22 -5.07 16 25 C -0.08 -2.07 10.04 22.25 0.22 -1.85 16 26 C -0.16 -4.56 10.04 22.28 0.22 -4.33 16 27 C -0.09 -3.11 10.04 22.26 0.22 -2.89 16 28 C -0.21 -8.56 8.25 22.37 0.18 -8.38 16 29 H 0.05 1.38 6.25 -2.39 -0.01 1.37 16 30 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 31 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.12 2.24 7.90 -2.39 -0.02 2.22 16 33 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.05 1.65 5.95 -2.39 -0.01 1.63 16 36 H 0.08 2.75 4.48 -2.39 -0.01 2.74 16 37 H 0.11 2.75 8.07 -2.39 -0.02 2.73 16 38 H 0.06 2.15 8.07 -2.38 -0.02 2.13 16 39 H 0.02 0.86 2.38 -2.39 -0.01 0.85 16 40 H 0.01 0.28 8.14 -2.38 -0.02 0.26 16 41 H 0.04 1.44 8.08 -2.39 -0.02 1.42 16 42 H 0.07 1.78 8.03 -2.39 -0.02 1.76 16 43 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 44 H 0.09 2.75 6.10 -2.39 -0.01 2.74 16 45 H 0.07 2.43 6.75 -2.39 -0.02 2.41 16 46 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 47 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 48 H 0.17 2.99 8.06 -2.91 -0.02 2.97 16 49 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 50 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 51 H 0.12 5.26 5.31 -2.91 -0.02 5.24 16 Total: -1.00 -66.43 395.51 6.09 -60.35 By element: Atomic # 1 Polarization: 27.14 SS G_CDS: 0.87 Total: 28.02 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: 7.44 Total: -1.45 kcal Atomic # 7 Polarization: -95.93 SS G_CDS: -3.42 Total: -99.35 kcal Atomic # 8 Polarization: -34.84 SS G_CDS: -0.50 Total: -35.34 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.69 Total: 47.78 kcal Total: -66.43 6.09 -60.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700976352.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.748 kcal (2) G-P(sol) polarization free energy of solvation -66.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds