Wall clock time and date at job start Tue Mar 31 2020 18:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46955 * 2 1 4 4 N 1.46493 * 109.47346 * 120.00193 * 2 1 3 5 5 C 1.46502 * 119.99775 * 294.44425 * 4 2 1 6 6 C 1.53004 * 109.47122 * 269.99544 * 5 4 2 7 7 N 1.46491 * 109.47428 * 180.02562 * 6 5 4 8 8 C 1.46500 * 119.99668 * 270.00271 * 7 6 5 9 9 C 1.36933 * 120.00269 * 89.99601 * 7 6 5 10 10 H 1.07998 * 120.00078 * 17.43704 * 9 7 6 11 11 C 1.38815 * 120.00199 * 197.42872 * 9 7 6 12 12 N 1.31625 * 119.99888 * 17.25813 * 11 9 7 13 13 Si 1.86801 * 120.00286 * 197.26081 * 11 9 7 14 14 H 1.48501 * 109.47269 * 94.98485 * 13 11 9 15 15 H 1.48495 * 109.47036 * 214.98891 * 13 11 9 16 16 H 1.48500 * 109.46651 * 334.98884 * 13 11 9 17 17 C 1.34778 * 120.00138 * 114.43946 * 4 2 1 18 18 O 1.21281 * 119.99927 * 185.02445 * 17 4 2 19 19 C 1.50698 * 119.99753 * 5.02191 * 17 4 2 20 20 H 1.08997 * 109.47210 * 310.82797 * 19 17 4 21 21 C 1.52998 * 109.47210 * 70.82639 * 19 17 4 22 22 O 1.42905 * 109.46883 * 190.82695 * 19 17 4 23 23 C 1.35899 * 116.99729 * 154.08702 * 22 19 17 24 24 C 1.38729 * 120.05759 * 3.88565 * 23 22 19 25 25 C 1.38143 * 119.94346 * 179.74716 * 24 23 22 26 26 C 1.38270 * 120.05458 * 0.51176 * 25 24 23 27 27 C 1.38261 * 120.11204 * 359.76516 * 26 25 24 28 28 C 1.38143 * 120.05644 * 359.97438 * 27 26 25 29 29 H 1.08997 * 109.47098 * 300.00188 * 1 2 3 30 30 H 1.09005 * 109.47255 * 59.99507 * 1 2 3 31 31 H 1.08996 * 109.46972 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47244 * 240.00570 * 2 1 3 33 33 H 1.09002 * 109.46798 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47110 * 300.00106 * 3 2 1 35 35 H 1.09000 * 109.46679 * 60.00224 * 3 2 1 36 36 H 1.08998 * 109.47239 * 29.99753 * 5 4 2 37 37 H 1.09009 * 109.46928 * 149.99862 * 5 4 2 38 38 H 1.09007 * 109.46837 * 300.00674 * 6 5 4 39 39 H 1.09002 * 109.46763 * 59.99983 * 6 5 4 40 40 H 1.09001 * 109.47524 * 95.38091 * 8 7 6 41 41 H 1.09004 * 109.47270 * 215.38208 * 8 7 6 42 42 H 1.08998 * 109.47197 * 335.37768 * 8 7 6 43 43 H 0.96994 * 119.99549 * 179.97438 * 12 11 9 44 44 H 1.08998 * 109.46853 * 294.13816 * 21 19 17 45 45 H 1.08997 * 109.47490 * 174.13577 * 21 19 17 46 46 H 1.09007 * 109.46931 * 54.13404 * 21 19 17 47 47 H 1.07999 * 120.02994 * 359.97438 * 24 23 22 48 48 H 1.08000 * 119.97380 * 180.22970 * 25 24 23 49 49 H 1.08004 * 119.94221 * 179.74711 * 26 25 24 50 50 H 1.08004 * 119.97555 * 179.97438 * 27 26 25 51 51 H 1.07998 * 120.03092 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7675 -0.1231 2.5232 6 6 2.9184 0.8102 2.9047 7 7 2.6680 1.3772 4.2320 8 6 1.9288 2.6351 4.3635 9 6 3.1247 0.7313 5.3497 10 1 3.8933 -0.0222 5.2618 11 6 2.5998 1.0452 6.5959 12 7 1.4567 1.6916 6.6847 13 14 3.5159 0.5504 8.1469 14 1 4.3565 1.6843 8.6084 15 1 2.5386 0.1951 9.2069 16 1 4.3809 -0.6216 7.8581 17 6 2.6983 -1.8480 1.0755 18 8 3.0233 -2.4665 2.0669 19 6 3.0547 -2.3737 -0.2911 20 1 2.1698 -2.3613 -0.9273 21 6 4.1401 -1.4908 -0.9100 22 8 3.5391 -3.7131 -0.1748 23 6 3.3979 -4.5168 -1.2615 24 6 2.8794 -4.0044 -2.4419 25 6 2.7418 -4.8222 -3.5468 26 6 3.1104 -6.1528 -3.4737 27 6 3.6220 -6.6672 -2.2968 28 6 3.7667 -5.8523 -1.1907 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 0.8338 0.4390 2.5075 37 1 1.6949 -0.9281 3.2547 38 1 3.8522 0.2480 2.9203 39 1 2.9911 1.6150 2.1732 40 1 0.8763 2.4205 4.5493 41 1 2.3348 3.2099 5.1960 42 1 2.0252 3.2111 3.4432 43 1 1.0898 1.9106 7.5555 44 1 3.7369 -0.4951 -1.0948 45 1 4.4719 -1.9289 -1.8513 46 1 4.9849 -1.4193 -0.2248 47 1 2.5870 -2.9663 -2.4981 48 1 2.3417 -4.4229 -4.4671 49 1 2.9982 -6.7915 -4.3374 50 1 3.9089 -7.7070 -2.2420 51 1 4.1660 -6.2547 -0.2714 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700976353.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:52 Heat of formation + Delta-G solvation = -11.507211 kcal Electronic energy + Delta-G solvation = -29912.658159 eV Core-core repulsion = 26006.964441 eV Total energy + Delta-G solvation = -3905.693719 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.86555 -39.61690 -37.61151 -36.60360 -35.46679 -32.58502 -31.96000 -31.13506 -30.88532 -29.85099 -28.25871 -27.21093 -25.85316 -24.94557 -23.57551 -22.91407 -22.25788 -21.51323 -20.47235 -18.92719 -18.52734 -17.27096 -16.66517 -16.45154 -15.92301 -15.76617 -15.27557 -15.05106 -14.67246 -14.49752 -14.18746 -13.94071 -13.65037 -13.56042 -13.38258 -13.24686 -13.21273 -12.85198 -12.56743 -12.43331 -12.28203 -12.22465 -11.95477 -11.82182 -11.70591 -11.55649 -11.29366 -11.14483 -11.02137 -10.91230 -10.85855 -10.74481 -10.44814 -10.10289 -9.86109 -9.69600 -9.45334 -9.24472 -8.63529 -8.40094 -8.36674 -6.77877 -5.69492 -3.09136 1.08743 1.21576 2.56064 2.73817 3.43239 3.46528 3.51043 3.54494 3.55704 4.28911 4.43477 4.57600 4.61380 4.65483 4.68953 4.72551 4.88347 4.98581 5.04653 5.12351 5.15585 5.32051 5.34865 5.44690 5.46375 5.52148 5.54667 5.71837 5.73122 5.74128 5.76503 5.81947 5.85831 6.08374 6.09331 6.15389 6.16990 6.25263 6.28634 6.33830 6.50920 6.61812 6.70156 6.79444 7.03199 7.21981 7.38462 7.61835 7.70209 7.89437 8.36745 8.42588 9.27804 9.91092 10.36621 11.36563 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016105 B = 0.002825 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.214922 B = 9910.123633 C =11118.397889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.123 3.877 3 C -0.167 4.167 4 N -0.598 5.598 5 C 0.094 3.906 6 C 0.139 3.861 7 N -0.598 5.598 8 C 0.163 3.837 9 C -0.250 4.250 10 H 0.072 0.928 11 C -0.001 4.001 12 N -0.910 5.910 13 Si 0.903 3.097 14 H -0.289 1.289 15 H -0.292 1.292 16 H -0.278 1.278 17 C 0.512 3.488 18 O -0.508 6.508 19 C 0.066 3.934 20 H 0.093 0.907 21 C -0.177 4.177 22 O -0.283 6.283 23 C 0.134 3.866 24 C -0.215 4.215 25 C -0.080 4.080 26 C -0.164 4.164 27 C -0.080 4.080 28 C -0.151 4.151 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.044 0.956 39 H 0.044 0.956 40 H 0.028 0.972 41 H 0.046 0.954 42 H -0.003 1.003 43 H 0.251 0.749 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.077 0.923 47 H 0.129 0.871 48 H 0.124 0.876 49 H 0.122 0.878 50 H 0.128 0.872 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.038 -7.443 -24.957 26.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.019 3.981 3 C -0.225 4.225 4 N -0.334 5.334 5 C -0.030 4.030 6 C 0.011 3.989 7 N -0.321 5.321 8 C 0.019 3.981 9 C -0.379 4.379 10 H 0.090 0.910 11 C -0.199 4.199 12 N -0.555 5.555 13 Si 0.733 3.267 14 H -0.216 1.216 15 H -0.219 1.219 16 H -0.203 1.203 17 C 0.297 3.703 18 O -0.382 6.382 19 C 0.006 3.994 20 H 0.111 0.889 21 C -0.235 4.235 22 O -0.195 6.195 23 C 0.089 3.911 24 C -0.233 4.233 25 C -0.098 4.098 26 C -0.182 4.182 27 C -0.098 4.098 28 C -0.170 4.170 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.046 0.954 41 H 0.065 0.935 42 H 0.015 0.985 43 H 0.061 0.939 44 H 0.102 0.898 45 H 0.092 0.908 46 H 0.096 0.904 47 H 0.146 0.854 48 H 0.142 0.858 49 H 0.140 0.860 50 H 0.146 0.854 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.219 -7.740 -24.026 25.243 hybrid contribution 0.109 -0.096 0.707 0.722 sum 0.328 -7.836 -23.319 24.603 Atomic orbital electron populations 1.22201 0.94842 1.02430 1.02935 1.21278 0.94753 0.94244 0.87803 1.22318 1.01816 0.95269 1.03057 1.48193 1.54779 1.22200 1.08202 1.22640 1.00752 0.98710 0.80887 1.21306 0.95685 0.94385 0.87562 1.44036 1.65033 1.22350 1.00711 1.20824 0.96143 0.85753 0.95409 1.19311 1.14893 1.18913 0.84798 0.91009 1.24897 0.96142 1.00829 0.98010 1.70110 1.17186 1.45266 1.22985 0.86232 0.79084 0.78148 0.83196 1.21614 1.21862 1.20346 1.19948 0.79144 0.81380 0.89792 1.90781 1.51957 1.56669 1.38747 1.22297 0.98393 0.81954 0.96713 0.88922 1.22390 0.99383 0.99786 1.01917 1.86255 1.76542 1.21742 1.34980 1.19151 0.94987 0.90825 0.86178 1.21297 1.07188 1.01172 0.93660 1.20934 0.97615 0.93627 0.97625 1.21055 1.03043 0.95737 0.98371 1.20982 0.97245 0.99432 0.92155 1.20519 1.05188 0.90886 1.00366 0.91376 0.91486 0.92456 0.89807 0.91880 0.91670 0.90783 0.91158 0.89646 0.93771 0.93769 0.95414 0.93534 0.98488 0.93859 0.89841 0.90804 0.90402 0.85373 0.85845 0.86020 0.85384 0.84978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.64 9.26 37.16 0.34 -1.29 16 2 C 0.12 1.30 2.41 -67.93 -0.16 1.14 16 3 C -0.17 -1.67 7.75 37.16 0.29 -1.38 16 4 N -0.60 -9.03 2.40 -166.10 -0.40 -9.43 16 5 C 0.09 1.80 5.04 -4.04 -0.02 1.78 16 6 C 0.14 2.90 5.73 -4.04 -0.02 2.87 16 7 N -0.60 -15.23 2.93 -181.12 -0.53 -15.76 16 8 C 0.16 3.98 9.02 59.85 0.54 4.52 16 9 C -0.25 -7.12 9.69 -15.06 -0.15 -7.27 16 10 H 0.07 2.08 7.87 -52.49 -0.41 1.67 16 11 C 0.00 -0.03 5.03 -17.43 -0.09 -0.12 16 12 N -0.91 -26.86 10.63 55.49 0.59 -26.27 16 13 Si 0.90 22.76 29.59 -169.99 -5.03 17.73 16 14 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 15 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 16 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 17 C 0.51 8.61 7.00 -10.99 -0.08 8.53 16 18 O -0.51 -11.24 16.09 -14.12 -0.23 -11.47 16 19 C 0.07 0.84 1.77 -27.88 -0.05 0.79 16 20 H 0.09 0.93 5.08 -51.93 -0.26 0.67 16 21 C -0.18 -1.78 8.84 37.16 0.33 -1.45 16 22 O -0.28 -4.19 9.35 -39.10 -0.37 -4.55 16 23 C 0.13 1.65 6.59 -39.22 -0.26 1.39 16 24 C -0.21 -2.09 8.30 -39.43 -0.33 -2.42 16 25 C -0.08 -0.66 10.04 -39.60 -0.40 -1.06 16 26 C -0.16 -1.34 10.04 -39.56 -0.40 -1.73 16 27 C -0.08 -0.71 10.04 -39.61 -0.40 -1.11 16 28 C -0.15 -1.69 9.99 -39.43 -0.39 -2.09 16 29 H 0.07 0.78 6.89 -51.93 -0.36 0.42 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.69 4.45 -51.93 -0.23 0.46 16 33 H 0.06 0.64 7.63 -51.93 -0.40 0.25 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.90 6.38 -51.93 -0.33 0.57 16 36 H 0.07 1.31 6.71 -51.93 -0.35 0.96 16 37 H 0.09 2.00 7.36 -51.92 -0.38 1.62 16 38 H 0.04 0.99 8.02 -51.93 -0.42 0.58 16 39 H 0.04 0.80 5.12 -51.93 -0.27 0.54 16 40 H 0.03 0.72 7.46 -51.93 -0.39 0.33 16 41 H 0.05 1.23 7.09 -51.93 -0.37 0.86 16 42 H 0.00 -0.07 7.83 -51.93 -0.41 -0.48 16 43 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 44 H 0.08 0.68 5.77 -51.93 -0.30 0.38 16 45 H 0.07 0.62 7.21 -51.93 -0.37 0.25 16 46 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.13 1.02 5.60 -52.49 -0.29 0.72 16 48 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 49 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 50 H 0.13 0.83 8.06 -52.48 -0.42 0.40 16 51 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 398.44 15.07 6.00 6.00 Total: -1.00 -34.32 398.44 -9.25 -43.57 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -8.05 Total: -0.92 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -1.24 Total: 1.09 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: -0.34 Total: -51.47 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.59 Total: -16.02 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.03 Total: 17.73 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.32 -9.25 -43.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700976353.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.067 kcal (2) G-P(sol) polarization free energy of solvation -34.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds