Wall clock time and date at job start Tue Mar 31 2020 18:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46955 * 2 1 4 4 N 1.46493 * 109.47346 * 120.00193 * 2 1 3 5 5 C 1.46502 * 119.99775 * 294.44425 * 4 2 1 6 6 C 1.53004 * 109.47122 * 269.99544 * 5 4 2 7 7 N 1.46491 * 109.47428 * 180.02562 * 6 5 4 8 8 C 1.46500 * 119.99668 * 270.00271 * 7 6 5 9 9 C 1.36933 * 120.00269 * 89.99601 * 7 6 5 10 10 H 1.07998 * 120.00078 * 17.43704 * 9 7 6 11 11 C 1.38815 * 120.00199 * 197.42872 * 9 7 6 12 12 N 1.31625 * 119.99888 * 17.25813 * 11 9 7 13 13 Si 1.86801 * 120.00286 * 197.26081 * 11 9 7 14 14 H 1.48501 * 109.47269 * 94.98485 * 13 11 9 15 15 H 1.48495 * 109.47036 * 214.98891 * 13 11 9 16 16 H 1.48500 * 109.46651 * 334.98884 * 13 11 9 17 17 C 1.34778 * 120.00138 * 114.43946 * 4 2 1 18 18 O 1.21281 * 119.99927 * 185.02445 * 17 4 2 19 19 C 1.50698 * 119.99753 * 5.02191 * 17 4 2 20 20 H 1.08997 * 109.47210 * 310.82797 * 19 17 4 21 21 C 1.52998 * 109.47210 * 70.82639 * 19 17 4 22 22 O 1.42905 * 109.46883 * 190.82695 * 19 17 4 23 23 C 1.35899 * 116.99729 * 154.08702 * 22 19 17 24 24 C 1.38729 * 120.05759 * 3.88565 * 23 22 19 25 25 C 1.38143 * 119.94346 * 179.74716 * 24 23 22 26 26 C 1.38270 * 120.05458 * 0.51176 * 25 24 23 27 27 C 1.38261 * 120.11204 * 359.76516 * 26 25 24 28 28 C 1.38143 * 120.05644 * 359.97438 * 27 26 25 29 29 H 1.08997 * 109.47098 * 300.00188 * 1 2 3 30 30 H 1.09005 * 109.47255 * 59.99507 * 1 2 3 31 31 H 1.08996 * 109.46972 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47244 * 240.00570 * 2 1 3 33 33 H 1.09002 * 109.46798 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47110 * 300.00106 * 3 2 1 35 35 H 1.09000 * 109.46679 * 60.00224 * 3 2 1 36 36 H 1.08998 * 109.47239 * 29.99753 * 5 4 2 37 37 H 1.09009 * 109.46928 * 149.99862 * 5 4 2 38 38 H 1.09007 * 109.46837 * 300.00674 * 6 5 4 39 39 H 1.09002 * 109.46763 * 59.99983 * 6 5 4 40 40 H 1.09001 * 109.47524 * 95.38091 * 8 7 6 41 41 H 1.09004 * 109.47270 * 215.38208 * 8 7 6 42 42 H 1.08998 * 109.47197 * 335.37768 * 8 7 6 43 43 H 0.96994 * 119.99549 * 179.97438 * 12 11 9 44 44 H 1.08998 * 109.46853 * 294.13816 * 21 19 17 45 45 H 1.08997 * 109.47490 * 174.13577 * 21 19 17 46 46 H 1.09007 * 109.46931 * 54.13404 * 21 19 17 47 47 H 1.07999 * 120.02994 * 359.97438 * 24 23 22 48 48 H 1.08000 * 119.97380 * 180.22970 * 25 24 23 49 49 H 1.08004 * 119.94221 * 179.74711 * 26 25 24 50 50 H 1.08004 * 119.97555 * 179.97438 * 27 26 25 51 51 H 1.07998 * 120.03092 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7675 -0.1231 2.5232 6 6 2.9184 0.8102 2.9047 7 7 2.6680 1.3772 4.2320 8 6 1.9288 2.6351 4.3635 9 6 3.1247 0.7313 5.3497 10 1 3.8933 -0.0222 5.2618 11 6 2.5998 1.0452 6.5959 12 7 1.4567 1.6916 6.6847 13 14 3.5159 0.5504 8.1469 14 1 4.3565 1.6843 8.6084 15 1 2.5386 0.1951 9.2069 16 1 4.3809 -0.6216 7.8581 17 6 2.6983 -1.8480 1.0755 18 8 3.0233 -2.4665 2.0669 19 6 3.0547 -2.3737 -0.2911 20 1 2.1698 -2.3613 -0.9273 21 6 4.1401 -1.4908 -0.9100 22 8 3.5391 -3.7131 -0.1748 23 6 3.3979 -4.5168 -1.2615 24 6 2.8794 -4.0044 -2.4419 25 6 2.7418 -4.8222 -3.5468 26 6 3.1104 -6.1528 -3.4737 27 6 3.6220 -6.6672 -2.2968 28 6 3.7667 -5.8523 -1.1907 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 0.8338 0.4390 2.5075 37 1 1.6949 -0.9281 3.2547 38 1 3.8522 0.2480 2.9203 39 1 2.9911 1.6150 2.1732 40 1 0.8763 2.4205 4.5493 41 1 2.3348 3.2099 5.1960 42 1 2.0252 3.2111 3.4432 43 1 1.0898 1.9106 7.5555 44 1 3.7369 -0.4951 -1.0948 45 1 4.4719 -1.9289 -1.8513 46 1 4.9849 -1.4193 -0.2248 47 1 2.5870 -2.9663 -2.4981 48 1 2.3417 -4.4229 -4.4671 49 1 2.9982 -6.7915 -4.3374 50 1 3.9089 -7.7070 -2.2420 51 1 4.1660 -6.2547 -0.2714 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700976353.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:51 Heat of formation + Delta-G solvation = -31.263226 kcal Electronic energy + Delta-G solvation = -29913.514844 eV Core-core repulsion = 26006.964441 eV Total energy + Delta-G solvation = -3906.550404 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.91695 -40.66145 -38.55116 -37.94470 -37.25663 -33.96266 -33.21738 -32.56127 -31.75807 -30.62884 -29.81485 -28.10063 -27.89903 -26.16650 -24.98037 -23.75545 -23.19545 -22.58399 -22.19151 -20.01880 -19.46593 -18.85881 -18.30300 -17.42987 -17.07955 -16.73528 -16.71743 -16.32336 -15.94856 -15.58694 -15.36201 -15.20191 -14.98579 -14.97754 -14.46686 -14.37488 -14.19610 -14.08172 -13.83223 -13.64675 -13.38833 -13.24406 -13.14398 -12.89174 -12.84249 -12.81272 -12.69121 -12.44366 -12.40137 -12.19214 -12.15029 -12.07668 -12.00352 -11.78939 -11.72799 -11.45684 -10.78586 -10.69393 -9.93867 -9.86941 -9.18624 -8.85572 -7.89435 -5.31136 0.40206 0.48496 1.40325 1.41891 1.44559 1.48669 1.52623 2.39984 2.50227 2.85577 3.22437 3.24619 3.54404 3.71316 3.80776 3.86536 3.93826 4.00884 4.11637 4.13529 4.24940 4.29952 4.39415 4.52349 4.52986 4.56722 4.59344 4.62007 4.71046 4.76656 4.80380 4.82997 4.92576 4.98106 5.00742 5.05269 5.10256 5.14439 5.31930 5.36759 5.37506 5.43733 5.48951 5.53472 5.59943 5.61652 5.70787 5.86304 6.26013 6.31822 6.46138 7.07850 7.11377 7.83132 8.21477 9.14105 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016105 B = 0.002825 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.214922 B = 9910.123633 C =11118.397889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.115 3.885 3 C -0.167 4.167 4 N -0.591 5.591 5 C 0.114 3.886 6 C 0.146 3.854 7 N -0.615 5.615 8 C 0.178 3.822 9 C -0.263 4.263 10 H 0.056 0.944 11 C -0.049 4.049 12 N -0.932 5.932 13 Si 0.963 3.037 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.279 1.279 17 C 0.503 3.497 18 O -0.577 6.577 19 C 0.075 3.925 20 H 0.125 0.875 21 C -0.171 4.171 22 O -0.321 6.321 23 C 0.103 3.897 24 C -0.215 4.215 25 C -0.079 4.079 26 C -0.161 4.161 27 C -0.083 4.083 28 C -0.178 4.178 29 H 0.046 0.954 30 H 0.103 0.897 31 H 0.051 0.949 32 H 0.119 0.881 33 H 0.062 0.938 34 H 0.102 0.898 35 H 0.050 0.950 36 H 0.078 0.922 37 H 0.032 0.968 38 H 0.020 0.980 39 H 0.081 0.919 40 H 0.006 0.994 41 H 0.019 0.981 42 H 0.039 0.961 43 H 0.250 0.750 44 H 0.109 0.891 45 H 0.096 0.904 46 H 0.053 0.947 47 H 0.149 0.851 48 H 0.157 0.843 49 H 0.151 0.849 50 H 0.149 0.851 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.398 -6.849 -29.373 30.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.014 3.986 3 C -0.224 4.224 4 N -0.325 5.325 5 C -0.011 4.011 6 C 0.019 3.981 7 N -0.339 5.339 8 C 0.033 3.967 9 C -0.393 4.393 10 H 0.074 0.926 11 C -0.245 4.245 12 N -0.579 5.579 13 Si 0.791 3.209 14 H -0.207 1.207 15 H -0.217 1.217 16 H -0.204 1.204 17 C 0.290 3.710 18 O -0.456 6.456 19 C 0.016 3.984 20 H 0.143 0.857 21 C -0.228 4.228 22 O -0.234 6.234 23 C 0.058 3.942 24 C -0.233 4.233 25 C -0.096 4.096 26 C -0.179 4.179 27 C -0.101 4.101 28 C -0.197 4.197 29 H 0.065 0.935 30 H 0.121 0.879 31 H 0.071 0.929 32 H 0.137 0.863 33 H 0.081 0.919 34 H 0.121 0.879 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.051 0.949 38 H 0.038 0.962 39 H 0.099 0.901 40 H 0.024 0.976 41 H 0.037 0.963 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.128 0.872 45 H 0.115 0.885 46 H 0.072 0.928 47 H 0.167 0.833 48 H 0.174 0.826 49 H 0.168 0.832 50 H 0.166 0.834 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.226 -7.127 -28.518 29.396 hybrid contribution 0.227 -0.356 1.933 1.979 sum 0.001 -7.484 -26.585 27.618 Atomic orbital electron populations 1.22208 0.93951 1.02387 1.03646 1.21743 0.95494 0.94806 0.86576 1.22327 1.01848 0.94446 1.03792 1.48198 1.54089 1.22016 1.08159 1.21963 1.00238 0.96566 0.82310 1.21353 0.94938 0.95338 0.86485 1.44224 1.65165 1.22977 1.01513 1.20607 0.94339 0.85362 0.96394 1.19414 1.14713 1.18747 0.86440 0.92650 1.25582 0.96962 1.01411 1.00499 1.70238 1.18085 1.46255 1.23316 0.85313 0.77917 0.77883 0.79766 1.20650 1.21703 1.20440 1.20911 0.77913 0.81056 0.91078 1.90745 1.54663 1.58781 1.41423 1.22326 1.00516 0.81838 0.93749 0.85742 1.22406 0.97764 1.00671 1.01939 1.86204 1.77415 1.22791 1.37018 1.19443 0.97128 0.90946 0.86656 1.21541 1.06473 1.02421 0.92914 1.21371 0.96526 0.93493 0.98242 1.21481 1.01462 0.96317 0.98682 1.21271 0.96835 1.00194 0.91775 1.20689 1.06547 0.91466 1.01001 0.93518 0.87878 0.92939 0.86324 0.91878 0.87918 0.93054 0.90387 0.94948 0.96174 0.90129 0.97580 0.96252 0.94215 0.94088 0.87239 0.88535 0.92801 0.83312 0.82583 0.83172 0.83369 0.86442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 9.26 71.98 0.67 -2.09 16 2 C 0.12 2.10 2.41 44.99 0.11 2.21 16 3 C -0.17 -2.71 7.75 71.98 0.56 -2.15 16 4 N -0.59 -17.84 2.40 -797.82 -1.91 -19.75 16 5 C 0.11 4.57 5.04 86.38 0.44 5.01 16 6 C 0.15 6.23 5.73 86.38 0.50 6.72 16 7 N -0.62 -32.22 2.93 -726.94 -2.13 -34.35 16 8 C 0.18 8.73 9.02 127.77 1.15 9.88 16 9 C -0.26 -15.62 9.69 84.03 0.81 -14.81 16 10 H 0.06 3.40 7.87 -2.91 -0.02 3.38 16 11 C -0.05 -2.92 5.03 84.86 0.43 -2.49 16 12 N -0.93 -56.57 10.63 21.65 0.23 -56.34 16 13 Si 0.96 48.16 29.59 68.60 2.03 50.19 16 14 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 15 H -0.29 -14.38 7.11 99.48 0.71 -13.68 16 16 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 17 C 0.50 17.46 7.00 87.66 0.61 18.07 16 18 O -0.58 -27.69 16.09 15.78 0.25 -27.44 16 19 C 0.08 1.82 1.77 29.85 0.05 1.88 16 20 H 0.13 2.14 5.08 -2.39 -0.01 2.12 16 21 C -0.17 -3.04 8.84 71.98 0.64 -2.41 16 22 O -0.32 -9.78 9.35 -73.61 -0.69 -10.47 16 23 C 0.10 2.49 6.59 22.51 0.15 2.64 16 24 C -0.22 -3.58 8.30 22.36 0.19 -3.39 16 25 C -0.08 -0.99 10.04 22.25 0.22 -0.77 16 26 C -0.16 -2.09 10.04 22.28 0.22 -1.87 16 27 C -0.08 -1.36 10.04 22.25 0.22 -1.14 16 28 C -0.18 -4.10 9.99 22.37 0.22 -3.88 16 29 H 0.05 1.00 6.89 -2.39 -0.02 0.98 16 30 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.12 1.38 4.45 -2.39 -0.01 1.37 16 33 H 0.06 1.05 7.63 -2.39 -0.02 1.03 16 34 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.05 1.10 6.38 -2.39 -0.02 1.08 16 36 H 0.08 2.98 6.71 -2.39 -0.02 2.96 16 37 H 0.03 1.63 7.36 -2.38 -0.02 1.61 16 38 H 0.02 0.94 8.02 -2.38 -0.02 0.92 16 39 H 0.08 2.84 5.12 -2.39 -0.01 2.82 16 40 H 0.01 0.31 7.46 -2.39 -0.02 0.30 16 41 H 0.02 1.02 7.09 -2.38 -0.02 1.00 16 42 H 0.04 1.58 7.83 -2.39 -0.02 1.56 16 43 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 44 H 0.11 1.33 5.77 -2.39 -0.01 1.31 16 45 H 0.10 1.32 7.21 -2.39 -0.02 1.30 16 46 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 47 H 0.15 1.70 5.60 -2.91 -0.02 1.68 16 48 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 49 H 0.15 1.08 8.06 -2.91 -0.02 1.05 16 50 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 51 H 0.12 2.86 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -82.38 398.44 5.89 -76.49 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 0.92 Total: 10.26 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 7.19 Total: 11.41 kcal Atomic # 7 Polarization: -106.63 SS G_CDS: -3.81 Total: -110.45 kcal Atomic # 8 Polarization: -37.47 SS G_CDS: -0.43 Total: -37.90 kcal Atomic # 14 Polarization: 48.16 SS G_CDS: 2.03 Total: 50.19 kcal Total: -82.38 5.89 -76.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700976353.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.225 kcal (2) G-P(sol) polarization free energy of solvation -82.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds