Wall clock time and date at job start Tue Mar 31 2020 18:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.46977 * 2 1 4 4 C 1.36943 * 120.00003 * 275.31383 * 3 2 1 5 5 H 1.07998 * 119.99911 * 37.57331 * 4 3 2 6 6 C 1.38816 * 119.99664 * 217.57864 * 4 3 2 7 7 N 1.31619 * 120.00121 * 21.42350 * 6 4 3 8 8 Si 1.86803 * 119.99714 * 201.43109 * 6 4 3 9 9 H 1.48500 * 109.47109 * 359.97438 * 8 6 4 10 10 H 1.48491 * 109.47317 * 119.99600 * 8 6 4 11 11 H 1.48499 * 109.46804 * 240.00108 * 8 6 4 12 12 C 1.46502 * 120.00400 * 95.30975 * 3 2 1 13 13 C 1.53005 * 109.47057 * 270.00655 * 12 3 2 14 14 N 1.46502 * 109.47057 * 180.02562 * 13 12 3 15 15 C 1.34780 * 119.99763 * 179.97438 * 14 13 12 16 16 O 1.21276 * 119.99920 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99518 * 179.72106 * 15 14 13 18 18 C 1.53002 * 109.46789 * 180.27417 * 17 15 14 19 19 H 1.08992 * 109.47050 * 54.99702 * 18 17 15 20 20 C 1.53003 * 109.46975 * 294.99643 * 18 17 15 21 21 C 1.50691 * 109.47045 * 175.00211 * 18 17 15 22 22 C 1.38161 * 120.03108 * 59.99551 * 21 18 17 23 23 C 1.38248 * 120.05795 * 179.97438 * 22 21 18 24 24 C 1.38284 * 120.11003 * 0.02562 * 23 22 21 25 25 C 1.38121 * 120.06006 * 0.02562 * 24 23 22 26 26 C 1.38716 * 120.02952 * 239.72295 * 21 18 17 27 27 O 1.35908 * 120.05234 * 359.97438 * 26 21 18 28 28 C 1.42896 * 117.00078 * 180.02562 * 27 26 21 29 29 H 1.09001 * 109.47674 * 299.99953 * 1 2 3 30 30 H 1.09001 * 109.47574 * 60.00365 * 1 2 3 31 31 H 1.09000 * 109.46831 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47153 * 240.00122 * 2 1 3 33 33 H 1.08995 * 109.47166 * 119.99764 * 2 1 3 34 34 H 0.97005 * 119.99619 * 180.02562 * 7 6 4 35 35 H 1.08993 * 109.47281 * 149.99806 * 12 3 2 36 36 H 1.09006 * 109.46741 * 29.99838 * 12 3 2 37 37 H 1.08991 * 109.47375 * 59.99094 * 13 12 3 38 38 H 1.09006 * 109.46678 * 299.99222 * 13 12 3 39 39 H 0.96996 * 119.99478 * 359.97438 * 14 13 12 40 40 H 1.09000 * 109.46974 * 300.27181 * 17 15 14 41 41 H 1.08997 * 109.47044 * 60.27543 * 17 15 14 42 42 H 1.08994 * 109.47364 * 300.00463 * 20 18 17 43 43 H 1.09011 * 109.46750 * 60.00447 * 20 18 17 44 44 H 1.08997 * 109.47193 * 179.97438 * 20 18 17 45 45 H 1.07995 * 119.97408 * 359.97438 * 22 21 18 46 46 H 1.08002 * 119.94372 * 179.97438 * 23 22 21 47 47 H 1.08002 * 119.97119 * 179.97438 * 24 23 22 48 48 H 1.08001 * 120.03349 * 179.97438 * 25 24 23 49 49 H 1.08997 * 109.46922 * 59.99806 * 28 27 26 50 50 H 1.09000 * 109.47010 * 179.97438 * 28 27 26 51 51 H 1.09007 * 109.46755 * 299.99455 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1429 2.0634 -1.1809 5 1 1.4103 1.9278 -1.9627 6 6 3.2110 2.9290 -1.3729 7 7 4.3025 2.7982 -0.6491 8 14 3.0990 4.2798 -2.6584 9 1 1.7773 4.2136 -3.3320 10 1 3.2546 5.6024 -2.0015 11 1 4.1763 4.0965 -3.6639 12 6 2.3731 2.0328 1.2633 13 6 1.1424 2.7382 1.8366 14 7 1.4974 3.3903 3.0995 15 6 0.5650 4.0778 3.7883 16 8 -0.5677 4.1570 3.3624 17 6 0.9287 4.7433 5.0906 18 6 -0.3032 5.4446 5.6664 19 1 -1.1197 4.7284 5.7574 20 6 -0.7245 6.5825 4.7342 21 6 0.0273 6.0052 7.0256 22 6 1.0366 6.9388 7.1617 23 6 1.3399 7.4538 8.4083 24 6 0.6347 7.0357 9.5220 25 6 -0.3746 6.1019 9.3914 26 6 -0.6854 5.5885 8.1403 27 8 -1.6827 4.6747 8.0082 28 6 -2.3743 4.2924 9.1987 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.0487 3.4033 -0.7831 35 1 3.1615 2.7642 1.0859 36 1 2.7254 1.2834 1.9721 37 1 0.3540 2.0068 2.0138 38 1 0.7901 3.4876 1.1277 39 1 2.4035 3.3272 3.4399 40 1 1.2819 3.9916 5.7965 41 1 1.7160 5.4766 4.9165 42 1 0.0920 7.2987 4.6431 43 1 -0.9636 6.1770 3.7510 44 1 -1.6024 7.0818 5.1441 45 1 1.5891 7.2665 6.2936 46 1 2.1295 8.1832 8.5127 47 1 0.8738 7.4393 10.4948 48 1 -0.9248 5.7754 10.2615 49 1 -2.8391 5.1706 9.6468 50 1 -3.1434 3.5602 8.9529 51 1 -1.6680 3.8550 9.9045 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713496113.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:49 Heat of formation + Delta-G solvation = -43.529126 kcal Electronic energy + Delta-G solvation = -28813.214862 eV Core-core repulsion = 24906.132569 eV Total energy + Delta-G solvation = -3907.082293 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.61679 -39.31563 -37.70221 -36.35440 -35.07710 -33.93445 -31.87378 -30.42754 -30.29052 -29.60995 -28.21212 -27.44832 -26.77054 -24.27400 -23.68698 -22.31073 -21.80734 -20.58188 -20.30292 -19.52005 -18.27949 -17.10397 -16.59269 -16.17493 -15.97746 -15.69524 -15.35639 -15.16337 -14.90311 -14.63481 -14.20934 -13.97913 -13.75826 -13.67985 -13.36906 -13.31113 -12.81456 -12.65822 -12.39644 -12.36405 -12.26565 -12.05323 -11.93371 -11.59385 -11.45753 -11.36462 -11.13353 -11.10681 -10.77942 -10.75077 -10.64894 -10.60415 -10.47343 -10.06037 -9.82880 -9.79530 -9.31274 -9.03677 -8.53885 -8.38429 -8.33535 -6.61283 -5.82619 -3.41262 1.10115 1.23501 3.05428 3.07508 3.34424 3.43662 3.47604 3.51257 3.70553 4.46443 4.51676 4.56451 4.76239 4.82684 4.86335 4.99088 5.04169 5.14511 5.20805 5.21466 5.28789 5.32152 5.42436 5.52741 5.58783 5.66619 5.76571 5.86027 6.01290 6.03644 6.10046 6.14338 6.19632 6.20378 6.29951 6.40294 6.44880 6.50650 6.53142 6.54088 6.57489 6.71227 6.92797 6.97591 7.07171 7.18203 7.18569 7.56889 7.81460 8.02559 8.49108 8.70208 9.15785 9.77713 10.35835 11.17279 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.015591 B = 0.002414 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.455890 B =11596.440054 C =12564.321725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.581 5.581 4 C -0.258 4.258 5 H 0.062 0.938 6 C 0.012 3.988 7 N -0.887 5.887 8 Si 0.896 3.104 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.289 1.289 12 C 0.138 3.862 13 C 0.098 3.902 14 N -0.723 5.723 15 C 0.507 3.493 16 O -0.545 6.545 17 C -0.133 4.133 18 C -0.029 4.029 19 H 0.093 0.907 20 C -0.147 4.147 21 C -0.103 4.103 22 C -0.078 4.078 23 C -0.156 4.156 24 C -0.088 4.088 25 C -0.209 4.209 26 C 0.129 3.871 27 O -0.311 6.311 28 C 0.027 3.973 29 H 0.044 0.956 30 H 0.050 0.950 31 H 0.036 0.964 32 H 0.045 0.955 33 H 0.034 0.966 34 H 0.254 0.746 35 H 0.098 0.902 36 H 0.028 0.972 37 H 0.050 0.950 38 H 0.063 0.937 39 H 0.396 0.604 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.048 0.952 43 H 0.081 0.919 44 H 0.050 0.950 45 H 0.129 0.871 46 H 0.122 0.878 47 H 0.121 0.879 48 H 0.126 0.874 49 H 0.053 0.947 50 H 0.100 0.900 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.652 6.260 22.384 24.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.301 5.301 4 C -0.388 4.388 5 H 0.079 0.921 6 C -0.188 4.188 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.200 1.200 10 H -0.214 1.214 11 H -0.216 1.216 12 C 0.010 3.990 13 C -0.027 4.027 14 N -0.373 5.373 15 C 0.293 3.707 16 O -0.423 6.423 17 C -0.173 4.173 18 C -0.047 4.047 19 H 0.112 0.888 20 C -0.204 4.204 21 C -0.104 4.104 22 C -0.096 4.096 23 C -0.174 4.174 24 C -0.106 4.106 25 C -0.227 4.227 26 C 0.084 3.916 27 O -0.224 6.224 28 C -0.068 4.068 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.116 0.884 36 H 0.046 0.954 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.229 0.771 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.067 0.933 43 H 0.100 0.900 44 H 0.069 0.931 45 H 0.147 0.853 46 H 0.140 0.860 47 H 0.139 0.861 48 H 0.143 0.857 49 H 0.072 0.928 50 H 0.118 0.882 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.372 6.256 21.844 23.888 hybrid contribution 0.416 0.797 -0.014 0.899 sum -6.956 7.053 21.830 23.972 Atomic orbital electron populations 1.22389 0.99918 0.99052 1.01416 1.20872 0.91770 0.87008 0.98843 1.43630 1.76060 1.08302 1.02141 1.19057 1.04685 1.21119 0.93948 0.92078 1.25186 0.94176 1.01264 0.98155 1.70008 1.03186 1.37261 1.42536 0.86339 0.77759 0.82193 0.81199 1.19982 1.21383 1.21611 1.21056 0.94652 0.96919 0.86359 1.22409 1.00891 0.96487 0.82950 1.46173 1.13163 1.53353 1.24650 1.20552 0.85441 0.78851 0.85867 1.90643 1.20545 1.60887 1.70210 1.21758 0.99552 1.00784 0.95250 1.19699 0.97466 0.97816 0.89763 0.88833 1.21960 1.00574 0.96976 1.00930 1.19342 0.97448 0.99729 0.93840 1.20919 0.95878 0.95046 0.97717 1.21051 1.01531 1.02196 0.92631 1.20899 0.94875 0.96112 0.98722 1.21202 1.02579 1.02766 0.96203 1.18875 0.89134 0.90187 0.93404 1.86130 1.45806 1.56329 1.34139 1.23055 0.96419 1.00352 0.86945 0.93647 0.93121 0.94483 0.93618 0.94770 0.93608 0.88435 0.95408 0.93133 0.91904 0.77053 0.89210 0.89105 0.93309 0.89990 0.93111 0.85267 0.85959 0.86052 0.85661 0.92809 0.88197 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.17 10.21 37.16 0.38 -2.79 16 2 C 0.14 2.99 6.44 -4.04 -0.03 2.96 16 3 N -0.58 -14.22 2.43 -173.24 -0.42 -14.64 16 4 C -0.26 -6.98 9.45 -15.06 -0.14 -7.12 16 5 H 0.06 1.67 7.92 -52.49 -0.42 1.25 16 6 C 0.01 0.34 4.95 -17.43 -0.09 0.25 16 7 N -0.89 -24.79 11.47 55.49 0.64 -24.15 16 8 Si 0.90 21.47 29.61 -169.99 -5.03 16.44 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 C 0.14 3.08 5.45 -4.04 -0.02 3.06 16 13 C 0.10 2.01 6.00 -4.04 -0.02 1.99 16 14 N -0.72 -12.16 5.56 -60.29 -0.33 -12.49 16 15 C 0.51 8.42 7.55 -10.98 -0.08 8.33 16 16 O -0.54 -10.99 13.96 5.56 0.08 -10.91 16 17 C -0.13 -1.66 4.91 -27.88 -0.14 -1.79 16 18 C -0.03 -0.37 2.17 -91.77 -0.20 -0.57 16 19 H 0.09 1.40 6.81 -51.93 -0.35 1.05 16 20 C -0.15 -1.94 8.75 37.16 0.33 -1.61 16 21 C -0.10 -1.18 4.79 -104.48 -0.50 -1.68 16 22 C -0.08 -0.77 8.76 -39.61 -0.35 -1.12 16 23 C -0.16 -1.37 10.04 -39.56 -0.40 -1.76 16 24 C -0.09 -0.74 10.04 -39.61 -0.40 -1.14 16 25 C -0.21 -1.92 9.04 -39.43 -0.36 -2.28 16 26 C 0.13 1.45 6.66 -39.21 -0.26 1.19 16 27 O -0.31 -3.52 9.26 -19.45 -0.18 -3.70 16 28 C 0.03 0.19 9.81 101.05 0.99 1.18 16 29 H 0.04 0.87 6.64 -51.93 -0.34 0.52 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 33 H 0.03 0.67 7.83 -51.93 -0.41 0.27 16 34 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 35 H 0.10 2.44 5.52 -51.93 -0.29 2.16 16 36 H 0.03 0.58 7.86 -51.93 -0.41 0.17 16 37 H 0.05 1.07 6.64 -51.93 -0.34 0.72 16 38 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.40 5.64 8.47 -40.82 -0.35 5.29 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.09 0.96 7.57 -51.93 -0.39 0.57 16 42 H 0.05 0.56 7.39 -51.93 -0.38 0.18 16 43 H 0.08 1.30 5.95 -51.92 -0.31 0.99 16 44 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.13 1.12 7.16 -52.49 -0.38 0.74 16 46 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 47 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 48 H 0.13 0.88 6.30 -52.49 -0.33 0.55 16 49 H 0.05 0.31 7.68 -51.93 -0.40 -0.09 16 50 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.05 0.32 7.65 -51.93 -0.40 -0.08 16 LS Contribution 407.39 15.07 6.14 6.14 Total: -1.00 -31.79 407.39 -8.83 -40.63 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -8.43 Total: 5.59 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -1.28 Total: -2.90 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: -0.12 Total: -51.28 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.10 Total: -14.61 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.79 -8.83 -40.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713496113.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.903 kcal (2) G-P(sol) polarization free energy of solvation -31.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds