Wall clock time and date at job start Tue Mar 31 2020 18:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.46977 * 2 1 4 4 C 1.36943 * 120.00003 * 275.31383 * 3 2 1 5 5 H 1.07998 * 119.99911 * 37.57331 * 4 3 2 6 6 C 1.38816 * 119.99664 * 217.57864 * 4 3 2 7 7 N 1.31619 * 120.00121 * 21.42350 * 6 4 3 8 8 Si 1.86803 * 119.99714 * 201.43109 * 6 4 3 9 9 H 1.48500 * 109.47109 * 359.97438 * 8 6 4 10 10 H 1.48491 * 109.47317 * 119.99600 * 8 6 4 11 11 H 1.48499 * 109.46804 * 240.00108 * 8 6 4 12 12 C 1.46502 * 120.00400 * 95.30975 * 3 2 1 13 13 C 1.53005 * 109.47057 * 270.00655 * 12 3 2 14 14 N 1.46502 * 109.47057 * 180.02562 * 13 12 3 15 15 C 1.34780 * 119.99763 * 179.97438 * 14 13 12 16 16 O 1.21276 * 119.99920 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99518 * 179.72106 * 15 14 13 18 18 C 1.53002 * 109.46789 * 180.27417 * 17 15 14 19 19 H 1.08992 * 109.47050 * 54.99702 * 18 17 15 20 20 C 1.53003 * 109.46975 * 294.99643 * 18 17 15 21 21 C 1.50691 * 109.47045 * 175.00211 * 18 17 15 22 22 C 1.38161 * 120.03108 * 59.99551 * 21 18 17 23 23 C 1.38248 * 120.05795 * 179.97438 * 22 21 18 24 24 C 1.38284 * 120.11003 * 0.02562 * 23 22 21 25 25 C 1.38121 * 120.06006 * 0.02562 * 24 23 22 26 26 C 1.38716 * 120.02952 * 239.72295 * 21 18 17 27 27 O 1.35908 * 120.05234 * 359.97438 * 26 21 18 28 28 C 1.42896 * 117.00078 * 180.02562 * 27 26 21 29 29 H 1.09001 * 109.47674 * 299.99953 * 1 2 3 30 30 H 1.09001 * 109.47574 * 60.00365 * 1 2 3 31 31 H 1.09000 * 109.46831 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47153 * 240.00122 * 2 1 3 33 33 H 1.08995 * 109.47166 * 119.99764 * 2 1 3 34 34 H 0.97005 * 119.99619 * 180.02562 * 7 6 4 35 35 H 1.08993 * 109.47281 * 149.99806 * 12 3 2 36 36 H 1.09006 * 109.46741 * 29.99838 * 12 3 2 37 37 H 1.08991 * 109.47375 * 59.99094 * 13 12 3 38 38 H 1.09006 * 109.46678 * 299.99222 * 13 12 3 39 39 H 0.96996 * 119.99478 * 359.97438 * 14 13 12 40 40 H 1.09000 * 109.46974 * 300.27181 * 17 15 14 41 41 H 1.08997 * 109.47044 * 60.27543 * 17 15 14 42 42 H 1.08994 * 109.47364 * 300.00463 * 20 18 17 43 43 H 1.09011 * 109.46750 * 60.00447 * 20 18 17 44 44 H 1.08997 * 109.47193 * 179.97438 * 20 18 17 45 45 H 1.07995 * 119.97408 * 359.97438 * 22 21 18 46 46 H 1.08002 * 119.94372 * 179.97438 * 23 22 21 47 47 H 1.08002 * 119.97119 * 179.97438 * 24 23 22 48 48 H 1.08001 * 120.03349 * 179.97438 * 25 24 23 49 49 H 1.08997 * 109.46922 * 59.99806 * 28 27 26 50 50 H 1.09000 * 109.47010 * 179.97438 * 28 27 26 51 51 H 1.09007 * 109.46755 * 299.99455 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1429 2.0634 -1.1809 5 1 1.4103 1.9278 -1.9627 6 6 3.2110 2.9290 -1.3729 7 7 4.3025 2.7982 -0.6491 8 14 3.0990 4.2798 -2.6584 9 1 1.7773 4.2136 -3.3320 10 1 3.2546 5.6024 -2.0015 11 1 4.1763 4.0965 -3.6639 12 6 2.3731 2.0328 1.2633 13 6 1.1424 2.7382 1.8366 14 7 1.4974 3.3903 3.0995 15 6 0.5650 4.0778 3.7883 16 8 -0.5677 4.1570 3.3624 17 6 0.9287 4.7433 5.0906 18 6 -0.3032 5.4446 5.6664 19 1 -1.1197 4.7284 5.7574 20 6 -0.7245 6.5825 4.7342 21 6 0.0273 6.0052 7.0256 22 6 1.0366 6.9388 7.1617 23 6 1.3399 7.4538 8.4083 24 6 0.6347 7.0357 9.5220 25 6 -0.3746 6.1019 9.3914 26 6 -0.6854 5.5885 8.1403 27 8 -1.6827 4.6747 8.0082 28 6 -2.3743 4.2924 9.1987 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.0487 3.4033 -0.7831 35 1 3.1615 2.7642 1.0859 36 1 2.7254 1.2834 1.9721 37 1 0.3540 2.0068 2.0138 38 1 0.7901 3.4876 1.1277 39 1 2.4035 3.3272 3.4399 40 1 1.2819 3.9916 5.7965 41 1 1.7160 5.4766 4.9165 42 1 0.0920 7.2987 4.6431 43 1 -0.9636 6.1770 3.7510 44 1 -1.6024 7.0818 5.1441 45 1 1.5891 7.2665 6.2936 46 1 2.1295 8.1832 8.5127 47 1 0.8738 7.4393 10.4948 48 1 -0.9248 5.7754 10.2615 49 1 -2.8391 5.1706 9.6468 50 1 -3.1434 3.5602 8.9529 51 1 -1.6680 3.8550 9.9045 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713496113.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:48 Heat of formation + Delta-G solvation = -61.722730 kcal Electronic energy + Delta-G solvation = -28814.003796 eV Core-core repulsion = 24906.132569 eV Total energy + Delta-G solvation = -3907.871227 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.42517 -40.59910 -38.47839 -38.09300 -36.13075 -35.44937 -33.83464 -31.63828 -31.03917 -30.81173 -29.68829 -28.23109 -28.04189 -26.08729 -24.65904 -23.41057 -22.95156 -22.14385 -21.72677 -20.71118 -19.02598 -18.67778 -17.94794 -17.21633 -17.08560 -16.75750 -16.57461 -16.50034 -16.30461 -15.79187 -15.44345 -15.31152 -15.14368 -14.86658 -14.47342 -14.36423 -14.14545 -14.03447 -13.85541 -13.62641 -13.28847 -13.23738 -13.03544 -12.91005 -12.70380 -12.64842 -12.47581 -12.35820 -12.29882 -12.16377 -12.01770 -11.95956 -11.67537 -11.61707 -11.54531 -11.50468 -10.72009 -10.54463 -9.95341 -9.75586 -9.05853 -8.59930 -7.85954 -5.48829 0.40186 0.53656 1.42483 1.47138 1.56506 1.72599 2.27547 2.43601 2.51360 2.85237 3.21613 3.62065 3.76954 3.81499 3.98273 4.13830 4.16156 4.25130 4.30591 4.33314 4.38976 4.43720 4.46882 4.50057 4.52051 4.57377 4.66523 4.72493 4.76230 4.79154 4.81342 4.83160 4.84012 5.00307 5.07622 5.14124 5.23722 5.26478 5.27933 5.34343 5.46152 5.53129 5.55919 5.61473 5.66894 5.67330 5.76066 5.92500 6.45210 6.50850 6.68167 7.14735 7.36344 7.82635 8.35023 9.10016 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.015591 B = 0.002414 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.455890 B =11596.440054 C =12564.321725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.137 3.863 3 N -0.599 5.599 4 C -0.269 4.269 5 H 0.051 0.949 6 C -0.029 4.029 7 N -0.910 5.910 8 Si 0.951 3.049 9 H -0.275 1.275 10 H -0.288 1.288 11 H -0.286 1.286 12 C 0.145 3.855 13 C 0.121 3.879 14 N -0.717 5.717 15 C 0.505 3.495 16 O -0.583 6.583 17 C -0.121 4.121 18 C -0.021 4.021 19 H 0.065 0.935 20 C -0.142 4.142 21 C -0.122 4.122 22 C -0.083 4.083 23 C -0.159 4.159 24 C -0.087 4.087 25 C -0.212 4.212 26 C 0.110 3.890 27 O -0.339 6.339 28 C 0.020 3.980 29 H 0.039 0.961 30 H 0.033 0.967 31 H 0.069 0.931 32 H 0.037 0.963 33 H 0.051 0.949 34 H 0.254 0.746 35 H 0.074 0.926 36 H 0.043 0.957 37 H 0.044 0.956 38 H 0.027 0.973 39 H 0.411 0.589 40 H 0.109 0.891 41 H 0.116 0.884 42 H 0.065 0.935 43 H 0.050 0.950 44 H 0.050 0.950 45 H 0.140 0.860 46 H 0.145 0.855 47 H 0.149 0.851 48 H 0.145 0.855 49 H 0.065 0.935 50 H 0.109 0.891 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.036 6.963 24.645 26.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.011 3.989 3 N -0.320 5.320 4 C -0.400 4.400 5 H 0.068 0.932 6 C -0.227 4.227 7 N -0.553 5.553 8 Si 0.779 3.221 9 H -0.199 1.199 10 H -0.214 1.214 11 H -0.213 1.213 12 C 0.018 3.982 13 C -0.006 4.006 14 N -0.369 5.369 15 C 0.293 3.707 16 O -0.464 6.464 17 C -0.161 4.161 18 C -0.040 4.040 19 H 0.083 0.917 20 C -0.199 4.199 21 C -0.123 4.123 22 C -0.101 4.101 23 C -0.177 4.177 24 C -0.105 4.105 25 C -0.230 4.230 26 C 0.065 3.935 27 O -0.253 6.253 28 C -0.075 4.075 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.088 0.912 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.247 0.753 40 H 0.127 0.873 41 H 0.134 0.866 42 H 0.084 0.916 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.158 0.842 46 H 0.163 0.837 47 H 0.166 0.834 48 H 0.163 0.837 49 H 0.084 0.916 50 H 0.127 0.873 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.749 6.947 24.132 26.003 hybrid contribution 0.176 0.542 -0.641 0.858 sum -6.573 7.489 23.491 25.517 Atomic orbital electron populations 1.22216 0.98063 1.00831 1.00311 1.21005 0.93119 0.85492 0.99258 1.43877 1.76404 1.09654 1.02076 1.19173 1.04335 1.21748 0.94695 0.93178 1.25761 0.94010 1.02853 1.00071 1.70091 1.03554 1.37890 1.43809 0.85489 0.77576 0.79786 0.79273 1.19932 1.21420 1.21273 1.20925 0.94434 0.96716 0.86096 1.21861 0.99701 0.95230 0.83789 1.46034 1.14193 1.53209 1.23439 1.21319 0.84595 0.78044 0.86781 1.90635 1.22305 1.62088 1.71378 1.21755 1.00105 1.01425 0.92773 1.19513 0.96624 0.96983 0.90924 0.91656 1.21882 1.01304 0.97446 0.99300 1.19264 0.98940 1.01162 0.92929 1.21089 0.95501 0.94657 0.98836 1.21368 1.01891 1.02221 0.92174 1.21289 0.93987 0.95275 0.99944 1.21471 1.02879 1.02645 0.96055 1.19122 0.89442 0.90713 0.94207 1.86093 1.46257 1.56641 1.36336 1.23290 0.96772 1.01209 0.86191 0.94169 0.94729 0.91212 0.94432 0.93037 0.93667 0.90795 0.93820 0.93737 0.95439 0.75280 0.87289 0.86574 0.91581 0.93125 0.93080 0.84245 0.83722 0.83368 0.83743 0.91623 0.87285 0.91506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.71 10.21 71.98 0.73 -4.98 16 2 C 0.14 5.71 6.44 86.38 0.56 6.27 16 3 N -0.60 -29.55 2.43 -702.00 -1.71 -31.25 16 4 C -0.27 -14.75 9.45 84.03 0.79 -13.96 16 5 H 0.05 2.80 7.92 -2.91 -0.02 2.78 16 6 C -0.03 -1.58 4.95 84.86 0.42 -1.16 16 7 N -0.91 -51.17 11.47 21.65 0.25 -50.92 16 8 Si 0.95 44.60 29.61 68.60 2.03 46.63 16 9 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 10 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 11 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 12 C 0.15 6.54 5.45 86.38 0.47 7.01 16 13 C 0.12 5.05 6.00 86.38 0.52 5.56 16 14 N -0.72 -23.98 5.56 -463.05 -2.57 -26.55 16 15 C 0.50 16.80 7.55 87.66 0.66 17.46 16 16 O -0.58 -24.37 13.96 -3.02 -0.04 -24.41 16 17 C -0.12 -2.88 4.91 29.85 0.15 -2.73 16 18 C -0.02 -0.55 2.17 -11.54 -0.03 -0.58 16 19 H 0.06 2.04 6.81 -2.39 -0.02 2.03 16 20 C -0.14 -3.79 8.75 71.98 0.63 -3.16 16 21 C -0.12 -2.68 4.79 -19.77 -0.09 -2.78 16 22 C -0.08 -1.46 8.76 22.25 0.19 -1.27 16 23 C -0.16 -2.30 10.04 22.28 0.22 -2.07 16 24 C -0.09 -1.19 10.04 22.25 0.22 -0.97 16 25 C -0.21 -3.42 9.04 22.37 0.20 -3.22 16 26 C 0.11 2.37 6.66 22.51 0.15 2.51 16 27 O -0.34 -7.64 9.26 -92.51 -0.86 -8.49 16 28 C 0.02 0.26 9.81 113.37 1.11 1.37 16 29 H 0.04 1.51 6.64 -2.39 -0.02 1.49 16 30 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.04 1.61 8.08 -2.39 -0.02 1.59 16 33 H 0.05 1.96 7.83 -2.39 -0.02 1.94 16 34 H 0.25 13.72 8.31 -92.70 -0.77 12.95 16 35 H 0.07 3.74 5.52 -2.39 -0.01 3.73 16 36 H 0.04 1.80 7.86 -2.38 -0.02 1.78 16 37 H 0.04 1.91 6.64 -2.39 -0.02 1.89 16 38 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.41 11.28 8.47 -92.71 -0.79 10.49 16 40 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.12 2.20 7.57 -2.39 -0.02 2.19 16 42 H 0.07 1.48 7.39 -2.39 -0.02 1.46 16 43 H 0.05 1.67 5.95 -2.38 -0.01 1.65 16 44 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.14 2.06 7.16 -2.91 -0.02 2.04 16 46 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 47 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 48 H 0.14 1.65 6.30 -2.91 -0.02 1.63 16 49 H 0.07 0.67 7.68 -2.39 -0.02 0.65 16 50 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 51 H 0.07 0.68 7.65 -2.38 -0.02 0.66 16 Total: -1.00 -70.24 407.39 4.15 -66.09 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: 0.13 Total: 25.61 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: 6.92 Total: 3.31 kcal Atomic # 7 Polarization: -104.69 SS G_CDS: -4.03 Total: -108.73 kcal Atomic # 8 Polarization: -32.01 SS G_CDS: -0.90 Total: -32.90 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -70.24 4.15 -66.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713496113.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.364 kcal (2) G-P(sol) polarization free energy of solvation -70.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds