Wall clock time and date at job start Tue Mar 31 2020 19:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47185 * 2 1 4 4 C 1.36937 * 119.99939 * 275.31024 * 3 2 1 5 5 H 1.08002 * 120.00015 * 37.57447 * 4 3 2 6 6 C 1.38806 * 120.00064 * 217.58023 * 4 3 2 7 7 N 1.31622 * 120.00160 * 21.42173 * 6 4 3 8 8 Si 1.86804 * 120.00091 * 201.42575 * 6 4 3 9 9 H 1.48506 * 109.46987 * 89.99812 * 8 6 4 10 10 H 1.48499 * 109.47250 * 209.99754 * 8 6 4 11 11 H 1.48502 * 109.47310 * 330.00013 * 8 6 4 12 12 C 1.46500 * 120.00154 * 95.31173 * 3 2 1 13 13 C 1.53001 * 109.47033 * 269.99992 * 12 3 2 14 14 N 1.46498 * 109.47518 * 179.97438 * 13 12 3 15 15 C 1.34770 * 120.00257 * 179.97438 * 14 13 12 16 16 O 1.21272 * 120.00209 * 0.02562 * 15 14 13 17 17 C 1.50701 * 119.99790 * 180.02562 * 15 14 13 18 18 H 1.08995 * 109.47148 * 299.99855 * 17 15 14 19 19 C 1.52998 * 109.46918 * 60.00340 * 17 15 14 20 20 C 1.53001 * 109.47051 * 180.02562 * 17 15 14 21 21 C 1.50703 * 109.47279 * 175.00392 * 20 17 15 22 22 C 1.38261 * 119.93768 * 269.72776 * 21 20 17 23 23 C 1.38150 * 120.05423 * 179.72628 * 22 21 20 24 24 C 1.38741 * 119.93932 * 0.56385 * 23 22 21 25 25 O 1.35898 * 120.05278 * 179.68248 * 24 23 22 26 26 C 1.42898 * 117.00361 * 0.02796 * 25 24 23 27 27 C 1.38733 * 119.88720 * 359.70957 * 24 23 22 28 28 C 1.38143 * 119.94719 * 359.97438 * 27 24 23 29 29 H 1.08996 * 109.47185 * 300.00301 * 1 2 3 30 30 H 1.09000 * 109.47277 * 60.00094 * 1 2 3 31 31 H 1.08995 * 109.47272 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46931 * 239.99812 * 2 1 3 33 33 H 1.09000 * 109.47277 * 119.99906 * 2 1 3 34 34 H 0.96995 * 120.00027 * 180.02562 * 7 6 4 35 35 H 1.08992 * 109.47257 * 150.00135 * 12 3 2 36 36 H 1.08995 * 109.46998 * 29.99682 * 12 3 2 37 37 H 1.09005 * 109.47156 * 59.99401 * 13 12 3 38 38 H 1.09007 * 109.47077 * 300.00167 * 13 12 3 39 39 H 0.96999 * 119.99228 * 0.02562 * 14 13 12 40 40 H 1.09000 * 109.47095 * 299.99677 * 19 17 15 41 41 H 1.08995 * 109.47607 * 59.99797 * 19 17 15 42 42 H 1.09004 * 109.46970 * 179.97438 * 19 17 15 43 43 H 1.09006 * 109.47277 * 295.00068 * 20 17 15 44 44 H 1.08997 * 109.47222 * 55.00082 * 20 17 15 45 45 H 1.08004 * 119.97686 * 359.97438 * 22 21 20 46 46 H 1.07998 * 120.03165 * 180.25020 * 23 22 21 47 47 H 1.08995 * 109.47179 * 179.97438 * 26 25 24 48 48 H 1.09006 * 109.46794 * 299.99792 * 26 25 24 49 49 H 1.09002 * 109.47222 * 59.99525 * 26 25 24 50 50 H 1.07996 * 120.02297 * 179.97438 * 27 24 23 51 51 H 1.07996 * 119.97617 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0633 -1.1808 5 1 1.4105 1.9278 -1.9628 6 6 3.2111 2.9289 -1.3729 7 7 4.3027 2.7980 -0.6491 8 14 3.0993 4.2795 -2.6586 9 1 2.5376 5.5069 -2.0395 10 1 4.4549 4.5695 -3.1910 11 1 2.2166 3.8357 -3.7672 12 6 2.3733 2.0327 1.2633 13 6 1.1426 2.7383 1.8366 14 7 1.4973 3.3893 3.1001 15 6 0.5649 4.0767 3.7890 16 8 -0.5678 4.1560 3.3631 17 6 0.9300 4.7468 5.0885 18 1 1.2819 3.9974 5.7974 19 6 2.0371 5.7731 4.8396 20 6 -0.3006 5.4523 5.6618 21 6 0.0312 6.0178 7.0188 22 6 -0.1711 5.2536 8.1531 23 6 0.1375 5.7676 9.3977 24 6 0.6398 7.0560 9.5097 25 8 0.9381 7.5662 10.7334 26 6 0.7103 6.7202 11.8622 27 6 0.8365 7.8227 8.3703 28 6 0.5324 7.3018 7.1276 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 5.0488 3.4031 -0.7830 35 1 3.1616 2.7641 1.0859 36 1 2.7255 1.2834 1.9721 37 1 0.3541 2.0069 2.0138 38 1 0.7903 3.4877 1.1276 39 1 2.4034 3.3262 3.4405 40 1 2.9137 5.2702 4.4314 41 1 1.6852 6.5225 4.1307 42 1 2.3008 6.2582 5.7795 43 1 -0.5999 6.2607 4.9946 44 1 -1.1182 4.7376 5.7561 45 1 -0.5670 4.2525 8.0658 46 1 -0.0168 5.1688 10.2832 47 1 0.9894 7.2480 12.7741 48 1 -0.3449 6.4502 11.9068 49 1 1.3127 5.8168 11.7667 50 1 1.2270 8.8261 8.4550 51 1 0.6857 7.8981 6.2403 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713497377.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:15 Heat of formation + Delta-G solvation = -47.079765 kcal Electronic energy + Delta-G solvation = -28370.380375 eV Core-core repulsion = 24463.144114 eV Total energy + Delta-G solvation = -3907.236260 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.49810 -39.55752 -37.98872 -36.33115 -34.55560 -34.05979 -31.89060 -31.42084 -30.61955 -29.44999 -28.04504 -27.42039 -26.24866 -24.44717 -23.51076 -22.72392 -21.73791 -20.95235 -20.34583 -19.46959 -18.42011 -17.16333 -16.55164 -16.40677 -16.05493 -15.59375 -15.33527 -15.26844 -14.88696 -14.49114 -14.26847 -13.94690 -13.86961 -13.73927 -13.51071 -13.42946 -12.98672 -12.74225 -12.43628 -12.38980 -12.27703 -12.13515 -11.99727 -11.59077 -11.54393 -11.39010 -11.18495 -11.11989 -10.96661 -10.89364 -10.78581 -10.62984 -10.50067 -10.08368 -9.86525 -9.81289 -9.37224 -9.20994 -8.56244 -8.42447 -8.29919 -6.63206 -5.84128 -3.43047 1.10604 1.17833 2.96398 3.00656 3.34811 3.42540 3.44134 3.45763 3.68435 4.45625 4.50330 4.60965 4.69513 4.73841 4.77018 4.84322 4.95771 5.07643 5.09939 5.15692 5.22207 5.27436 5.39491 5.42893 5.54957 5.64649 5.75274 5.77680 5.85495 5.99455 6.03847 6.11458 6.12268 6.14024 6.16347 6.17970 6.38278 6.43163 6.49398 6.51370 6.53395 6.68779 6.90603 6.92496 7.03867 7.10363 7.16394 7.54361 7.79814 7.97541 8.47423 8.63646 9.14123 9.75933 10.34028 11.15809 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.018188 B = 0.002101 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.072530 B =13323.351757 C =14099.304376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.580 5.580 4 C -0.260 4.260 5 H 0.062 0.938 6 C 0.013 3.987 7 N -0.887 5.887 8 Si 0.897 3.103 9 H -0.285 1.285 10 H -0.291 1.291 11 H -0.276 1.276 12 C 0.138 3.862 13 C 0.097 3.903 14 N -0.720 5.720 15 C 0.510 3.490 16 O -0.549 6.549 17 C -0.105 4.105 18 H 0.094 0.906 19 C -0.147 4.147 20 C -0.058 4.058 21 C -0.111 4.111 22 C -0.077 4.077 23 C -0.206 4.206 24 C 0.118 3.882 25 O -0.320 6.320 26 C 0.028 3.972 27 C -0.150 4.150 28 C -0.075 4.075 29 H 0.044 0.956 30 H 0.050 0.950 31 H 0.036 0.964 32 H 0.046 0.954 33 H 0.034 0.966 34 H 0.255 0.745 35 H 0.098 0.902 36 H 0.028 0.972 37 H 0.051 0.949 38 H 0.063 0.937 39 H 0.397 0.603 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.125 0.875 46 H 0.126 0.874 47 H 0.098 0.902 48 H 0.054 0.946 49 H 0.055 0.945 50 H 0.129 0.871 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.856 6.130 22.869 24.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.300 5.300 4 C -0.389 4.389 5 H 0.079 0.921 6 C -0.188 4.188 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.212 1.212 10 H -0.217 1.217 11 H -0.202 1.202 12 C 0.010 3.990 13 C -0.028 4.028 14 N -0.370 5.370 15 C 0.295 3.705 16 O -0.428 6.428 17 C -0.126 4.126 18 H 0.112 0.888 19 C -0.205 4.205 20 C -0.096 4.096 21 C -0.111 4.111 22 C -0.095 4.095 23 C -0.225 4.225 24 C 0.073 3.927 25 O -0.234 6.234 26 C -0.067 4.067 27 C -0.169 4.169 28 C -0.093 4.093 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.116 0.884 36 H 0.046 0.954 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.230 0.770 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.143 0.857 46 H 0.144 0.856 47 H 0.117 0.883 48 H 0.073 0.927 49 H 0.074 0.926 50 H 0.147 0.853 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.409 6.408 22.548 24.057 hybrid contribution 0.300 0.443 -0.292 0.610 sum -5.109 6.851 22.256 23.841 Atomic orbital electron populations 1.22387 0.99923 0.99057 1.01399 1.20878 0.91764 0.87005 0.98867 1.43613 1.76047 1.08281 1.02106 1.19031 1.04722 1.21211 0.93977 0.92075 1.25188 0.94158 1.01236 0.98171 1.69996 1.03164 1.37233 1.42581 0.86384 0.76921 0.82591 0.81472 1.21216 1.21706 1.20161 1.21054 0.94623 0.96919 0.86391 1.22437 1.00955 0.96509 0.82910 1.46150 1.13154 1.53170 1.24512 1.20543 0.85339 0.78734 0.85840 1.90672 1.20676 1.61311 1.70096 1.21278 0.97489 0.98622 0.95236 0.88787 1.21865 0.97367 0.98759 1.02494 1.20347 0.96693 1.00520 0.91995 1.19846 1.01359 0.94602 0.95274 1.20882 0.97818 0.99491 0.91279 1.21212 1.06759 0.95590 0.98920 1.19042 0.96108 0.92449 0.85098 1.86059 1.81742 1.42622 1.12974 1.23040 1.01114 0.95378 0.87200 1.20427 1.05687 1.00642 0.90130 1.20940 0.96742 0.94939 0.96635 0.93682 0.93109 0.94474 0.93589 0.94762 0.93532 0.88421 0.95396 0.93118 0.91866 0.76999 0.91847 0.91997 0.91321 0.90268 0.90184 0.85706 0.85627 0.88330 0.92699 0.92642 0.85305 0.85157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.13 10.21 37.16 0.38 -2.75 16 2 C 0.14 2.95 6.44 -4.04 -0.03 2.93 16 3 N -0.58 -14.05 2.43 -173.24 -0.42 -14.47 16 4 C -0.26 -6.97 9.45 -15.06 -0.14 -7.11 16 5 H 0.06 1.66 7.92 -52.49 -0.42 1.24 16 6 C 0.01 0.35 4.95 -17.43 -0.09 0.26 16 7 N -0.89 -24.65 11.47 55.49 0.64 -24.01 16 8 Si 0.90 21.40 29.60 -169.99 -5.03 16.37 16 9 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 C 0.14 3.05 5.45 -4.04 -0.02 3.02 16 13 C 0.10 1.97 6.00 -4.04 -0.02 1.95 16 14 N -0.72 -11.89 5.45 -60.29 -0.33 -12.22 16 15 C 0.51 8.28 7.15 -10.99 -0.08 8.20 16 16 O -0.55 -11.07 15.92 5.56 0.09 -10.98 16 17 C -0.10 -1.23 2.71 -91.77 -0.25 -1.48 16 18 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 19 C -0.15 -1.56 8.66 37.16 0.32 -1.24 16 20 C -0.06 -0.66 4.19 -27.88 -0.12 -0.78 16 21 C -0.11 -1.12 4.72 -104.60 -0.49 -1.61 16 22 C -0.08 -0.73 9.69 -39.60 -0.38 -1.11 16 23 C -0.21 -1.86 9.04 -39.43 -0.36 -2.22 16 24 C 0.12 1.17 6.69 -39.21 -0.26 0.91 16 25 O -0.32 -3.01 10.50 -19.42 -0.20 -3.21 16 26 C 0.03 0.15 9.81 101.05 0.99 1.15 16 27 C -0.15 -1.46 9.99 -39.43 -0.39 -1.85 16 28 C -0.07 -0.71 7.95 -39.61 -0.31 -1.03 16 29 H 0.04 0.85 6.64 -51.93 -0.34 0.50 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 33 H 0.03 0.66 7.83 -51.93 -0.41 0.26 16 34 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 35 H 0.10 2.42 5.52 -51.93 -0.29 2.14 16 36 H 0.03 0.58 7.86 -51.93 -0.41 0.17 16 37 H 0.05 1.05 6.64 -51.93 -0.34 0.71 16 38 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.40 5.58 7.89 -40.82 -0.32 5.26 16 40 H 0.06 0.66 7.56 -51.93 -0.39 0.26 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.64 6.26 -51.93 -0.33 0.31 16 43 H 0.08 0.96 8.08 -51.93 -0.42 0.54 16 44 H 0.08 0.97 7.90 -51.93 -0.41 0.56 16 45 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 46 H 0.13 0.87 6.30 -52.49 -0.33 0.54 16 47 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.05 0.26 7.66 -51.93 -0.40 -0.14 16 49 H 0.05 0.27 7.66 -51.93 -0.40 -0.13 16 50 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 51 H 0.13 1.08 8.04 -52.49 -0.42 0.66 16 LS Contribution 410.92 15.07 6.19 6.19 Total: -1.00 -31.60 410.92 -8.89 -40.49 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -8.56 Total: 4.60 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -1.26 Total: -2.75 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: -0.11 Total: -50.71 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -0.12 Total: -14.19 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -31.60 -8.89 -40.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713497377.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.589 kcal (2) G-P(sol) polarization free energy of solvation -31.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds