Wall clock time and date at job start Tue Mar 31 2020 19:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47185 * 2 1 4 4 C 1.36937 * 119.99939 * 275.31024 * 3 2 1 5 5 H 1.08002 * 120.00015 * 37.57447 * 4 3 2 6 6 C 1.38806 * 120.00064 * 217.58023 * 4 3 2 7 7 N 1.31622 * 120.00160 * 21.42173 * 6 4 3 8 8 Si 1.86804 * 120.00091 * 201.42575 * 6 4 3 9 9 H 1.48506 * 109.46987 * 89.99812 * 8 6 4 10 10 H 1.48499 * 109.47250 * 209.99754 * 8 6 4 11 11 H 1.48502 * 109.47310 * 330.00013 * 8 6 4 12 12 C 1.46500 * 120.00154 * 95.31173 * 3 2 1 13 13 C 1.53001 * 109.47033 * 269.99992 * 12 3 2 14 14 N 1.46498 * 109.47518 * 179.97438 * 13 12 3 15 15 C 1.34770 * 120.00257 * 179.97438 * 14 13 12 16 16 O 1.21272 * 120.00209 * 0.02562 * 15 14 13 17 17 C 1.50701 * 119.99790 * 180.02562 * 15 14 13 18 18 H 1.08995 * 109.47148 * 299.99855 * 17 15 14 19 19 C 1.52998 * 109.46918 * 60.00340 * 17 15 14 20 20 C 1.53001 * 109.47051 * 180.02562 * 17 15 14 21 21 C 1.50703 * 109.47279 * 175.00392 * 20 17 15 22 22 C 1.38261 * 119.93768 * 269.72776 * 21 20 17 23 23 C 1.38150 * 120.05423 * 179.72628 * 22 21 20 24 24 C 1.38741 * 119.93932 * 0.56385 * 23 22 21 25 25 O 1.35898 * 120.05278 * 179.68248 * 24 23 22 26 26 C 1.42898 * 117.00361 * 0.02796 * 25 24 23 27 27 C 1.38733 * 119.88720 * 359.70957 * 24 23 22 28 28 C 1.38143 * 119.94719 * 359.97438 * 27 24 23 29 29 H 1.08996 * 109.47185 * 300.00301 * 1 2 3 30 30 H 1.09000 * 109.47277 * 60.00094 * 1 2 3 31 31 H 1.08995 * 109.47272 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46931 * 239.99812 * 2 1 3 33 33 H 1.09000 * 109.47277 * 119.99906 * 2 1 3 34 34 H 0.96995 * 120.00027 * 180.02562 * 7 6 4 35 35 H 1.08992 * 109.47257 * 150.00135 * 12 3 2 36 36 H 1.08995 * 109.46998 * 29.99682 * 12 3 2 37 37 H 1.09005 * 109.47156 * 59.99401 * 13 12 3 38 38 H 1.09007 * 109.47077 * 300.00167 * 13 12 3 39 39 H 0.96999 * 119.99228 * 0.02562 * 14 13 12 40 40 H 1.09000 * 109.47095 * 299.99677 * 19 17 15 41 41 H 1.08995 * 109.47607 * 59.99797 * 19 17 15 42 42 H 1.09004 * 109.46970 * 179.97438 * 19 17 15 43 43 H 1.09006 * 109.47277 * 295.00068 * 20 17 15 44 44 H 1.08997 * 109.47222 * 55.00082 * 20 17 15 45 45 H 1.08004 * 119.97686 * 359.97438 * 22 21 20 46 46 H 1.07998 * 120.03165 * 180.25020 * 23 22 21 47 47 H 1.08995 * 109.47179 * 179.97438 * 26 25 24 48 48 H 1.09006 * 109.46794 * 299.99792 * 26 25 24 49 49 H 1.09002 * 109.47222 * 59.99525 * 26 25 24 50 50 H 1.07996 * 120.02297 * 179.97438 * 27 24 23 51 51 H 1.07996 * 119.97617 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0633 -1.1808 5 1 1.4105 1.9278 -1.9628 6 6 3.2111 2.9289 -1.3729 7 7 4.3027 2.7980 -0.6491 8 14 3.0993 4.2795 -2.6586 9 1 2.5376 5.5069 -2.0395 10 1 4.4549 4.5695 -3.1910 11 1 2.2166 3.8357 -3.7672 12 6 2.3733 2.0327 1.2633 13 6 1.1426 2.7383 1.8366 14 7 1.4973 3.3893 3.1001 15 6 0.5649 4.0767 3.7890 16 8 -0.5678 4.1560 3.3631 17 6 0.9300 4.7468 5.0885 18 1 1.2819 3.9974 5.7974 19 6 2.0371 5.7731 4.8396 20 6 -0.3006 5.4523 5.6618 21 6 0.0312 6.0178 7.0188 22 6 -0.1711 5.2536 8.1531 23 6 0.1375 5.7676 9.3977 24 6 0.6398 7.0560 9.5097 25 8 0.9381 7.5662 10.7334 26 6 0.7103 6.7202 11.8622 27 6 0.8365 7.8227 8.3703 28 6 0.5324 7.3018 7.1276 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 5.0488 3.4031 -0.7830 35 1 3.1616 2.7641 1.0859 36 1 2.7255 1.2834 1.9721 37 1 0.3541 2.0069 2.0138 38 1 0.7903 3.4877 1.1276 39 1 2.4034 3.3262 3.4405 40 1 2.9137 5.2702 4.4314 41 1 1.6852 6.5225 4.1307 42 1 2.3008 6.2582 5.7795 43 1 -0.5999 6.2607 4.9946 44 1 -1.1182 4.7376 5.7561 45 1 -0.5670 4.2525 8.0658 46 1 -0.0168 5.1688 10.2832 47 1 0.9894 7.2480 12.7741 48 1 -0.3449 6.4502 11.9068 49 1 1.3127 5.8168 11.7667 50 1 1.2270 8.8261 8.4550 51 1 0.6857 7.8981 6.2403 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713497377.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:14 Heat of formation + Delta-G solvation = -64.854455 kcal Electronic energy + Delta-G solvation = -28371.151143 eV Core-core repulsion = 24463.144114 eV Total energy + Delta-G solvation = -3908.007029 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.28938 -40.73674 -38.77605 -38.08282 -35.61864 -35.52435 -33.83220 -32.12470 -31.65995 -30.89043 -29.20457 -28.54339 -27.02114 -26.24134 -24.67659 -23.54993 -23.08271 -22.14094 -21.91079 -20.73907 -19.05304 -18.72682 -17.98290 -17.23662 -17.05828 -16.91479 -16.60569 -16.39835 -16.13215 -15.79536 -15.48772 -15.27496 -15.09916 -14.79918 -14.56179 -14.34420 -14.20086 -14.09052 -13.92979 -13.61061 -13.30564 -13.23678 -13.06206 -13.01501 -12.78950 -12.64926 -12.39757 -12.37728 -12.30237 -12.18825 -12.04071 -12.00752 -11.70499 -11.67135 -11.63182 -11.49419 -10.74587 -10.54839 -9.98725 -9.91532 -9.01936 -8.59946 -7.85997 -5.48969 0.41178 0.44694 1.43399 1.47462 1.54125 1.68830 2.24773 2.41470 2.50655 2.80942 3.21324 3.61261 3.82759 3.83820 3.93058 3.97991 4.05530 4.20346 4.30731 4.32881 4.39760 4.40733 4.47026 4.47294 4.51331 4.54279 4.67571 4.75731 4.76248 4.82174 4.84441 4.85071 4.88788 4.95296 5.08304 5.12856 5.21258 5.23757 5.28611 5.28707 5.34375 5.42538 5.47367 5.56299 5.66662 5.74198 5.75439 5.84627 6.44926 6.47621 6.64917 7.14619 7.31669 7.82754 8.34882 9.09677 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.018188 B = 0.002101 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.072530 B =13323.351757 C =14099.304376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.136 3.864 3 N -0.597 5.597 4 C -0.269 4.269 5 H 0.051 0.949 6 C -0.029 4.029 7 N -0.910 5.910 8 Si 0.951 3.049 9 H -0.289 1.289 10 H -0.289 1.289 11 H -0.272 1.272 12 C 0.145 3.855 13 C 0.120 3.880 14 N -0.714 5.714 15 C 0.509 3.491 16 O -0.591 6.591 17 C -0.092 4.092 18 H 0.118 0.882 19 C -0.144 4.144 20 C -0.051 4.051 21 C -0.119 4.119 22 C -0.081 4.081 23 C -0.207 4.207 24 C 0.109 3.891 25 O -0.338 6.338 26 C 0.019 3.981 27 C -0.162 4.162 28 C -0.077 4.077 29 H 0.040 0.960 30 H 0.033 0.967 31 H 0.069 0.931 32 H 0.037 0.963 33 H 0.052 0.948 34 H 0.254 0.746 35 H 0.074 0.926 36 H 0.044 0.956 37 H 0.047 0.953 38 H 0.026 0.974 39 H 0.411 0.589 40 H 0.066 0.934 41 H 0.051 0.949 42 H 0.086 0.914 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.137 0.863 46 H 0.146 0.854 47 H 0.117 0.883 48 H 0.063 0.937 49 H 0.063 0.937 50 H 0.137 0.863 51 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.767 5.952 24.772 25.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.011 3.989 3 N -0.319 5.319 4 C -0.400 4.400 5 H 0.069 0.931 6 C -0.227 4.227 7 N -0.553 5.553 8 Si 0.779 3.221 9 H -0.216 1.216 10 H -0.215 1.215 11 H -0.197 1.197 12 C 0.018 3.982 13 C -0.007 4.007 14 N -0.365 5.365 15 C 0.296 3.704 16 O -0.472 6.472 17 C -0.113 4.113 18 H 0.136 0.864 19 C -0.201 4.201 20 C -0.089 4.089 21 C -0.119 4.119 22 C -0.099 4.099 23 C -0.226 4.226 24 C 0.064 3.936 25 O -0.252 6.252 26 C -0.076 4.076 27 C -0.180 4.180 28 C -0.095 4.095 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.088 0.912 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.091 0.909 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.045 0.955 39 H 0.247 0.753 40 H 0.085 0.915 41 H 0.071 0.929 42 H 0.104 0.896 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.155 0.845 46 H 0.164 0.836 47 H 0.135 0.865 48 H 0.082 0.918 49 H 0.082 0.918 50 H 0.154 0.846 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.309 6.218 24.479 25.808 hybrid contribution 0.241 0.462 -0.798 0.953 sum -5.068 6.679 23.681 25.121 Atomic orbital electron populations 1.22213 0.98009 1.00842 1.00342 1.21015 0.93160 0.85463 0.99284 1.43854 1.76381 1.09636 1.02015 1.19156 1.04320 1.21753 0.94748 0.93124 1.25758 0.94030 1.02846 1.00083 1.70081 1.03517 1.37844 1.43857 0.85542 0.76779 0.80110 0.79673 1.21606 1.21477 1.19713 1.20925 0.94416 0.96730 0.86148 1.21890 0.99799 0.95266 0.83735 1.46015 1.14164 1.53016 1.23297 1.21353 0.84416 0.77808 0.86799 1.90654 1.22491 1.62624 1.71388 1.21266 0.98145 0.99120 0.92793 0.86438 1.21861 0.96823 0.98229 1.03223 1.20226 0.96141 0.99836 0.92659 1.19728 1.02466 0.95049 0.94641 1.21068 0.97563 1.00032 0.91217 1.21428 1.06141 0.95502 0.99511 1.19252 0.96022 0.92842 0.85503 1.86039 1.81767 1.43884 1.13493 1.23315 1.01947 0.95699 0.86598 1.20610 1.05956 1.01197 0.90278 1.21042 0.96534 0.94860 0.97050 0.94084 0.94742 0.91219 0.94477 0.92967 0.93681 0.90865 0.93725 0.93495 0.95516 0.75324 0.91454 0.92934 0.89557 0.91482 0.91143 0.84509 0.83617 0.86496 0.91847 0.91797 0.84551 0.84353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.57 10.21 71.98 0.73 -4.84 16 2 C 0.14 5.59 6.44 86.38 0.56 6.14 16 3 N -0.60 -29.04 2.43 -702.01 -1.71 -30.75 16 4 C -0.27 -14.62 9.45 84.03 0.79 -13.83 16 5 H 0.05 2.80 7.92 -2.91 -0.02 2.78 16 6 C -0.03 -1.58 4.95 84.86 0.42 -1.16 16 7 N -0.91 -50.86 11.47 21.65 0.25 -50.61 16 8 Si 0.95 44.41 29.60 68.60 2.03 46.44 16 9 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 10 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 11 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 12 C 0.14 6.41 5.45 86.38 0.47 6.88 16 13 C 0.12 4.90 6.00 86.38 0.52 5.42 16 14 N -0.71 -23.23 5.45 -463.06 -2.52 -25.76 16 15 C 0.51 16.29 7.15 87.66 0.63 16.92 16 16 O -0.59 -24.09 15.92 -3.00 -0.05 -24.13 16 17 C -0.09 -2.04 2.71 -11.54 -0.03 -2.07 16 18 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 19 C -0.14 -2.82 8.66 71.98 0.62 -2.20 16 20 C -0.05 -1.12 4.19 29.85 0.12 -0.99 16 21 C -0.12 -2.23 4.72 -19.85 -0.09 -2.32 16 22 C -0.08 -1.37 9.69 22.25 0.22 -1.16 16 23 C -0.21 -3.30 9.04 22.37 0.20 -3.10 16 24 C 0.11 1.99 6.69 22.51 0.15 2.14 16 25 O -0.34 -5.80 10.50 -92.40 -0.97 -6.77 16 26 C 0.02 0.17 9.81 113.37 1.11 1.28 16 27 C -0.16 -2.93 9.99 22.37 0.22 -2.71 16 28 C -0.08 -1.37 7.95 22.25 0.18 -1.20 16 29 H 0.04 1.49 6.64 -2.39 -0.02 1.48 16 30 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.04 1.57 8.08 -2.38 -0.02 1.55 16 33 H 0.05 1.94 7.83 -2.39 -0.02 1.92 16 34 H 0.25 13.69 8.31 -92.71 -0.77 12.92 16 35 H 0.07 3.67 5.52 -2.39 -0.01 3.66 16 36 H 0.04 1.80 7.86 -2.39 -0.02 1.78 16 37 H 0.05 1.95 6.64 -2.38 -0.02 1.94 16 38 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 39 H 0.41 11.07 7.89 -92.71 -0.73 10.34 16 40 H 0.07 1.27 7.56 -2.39 -0.02 1.25 16 41 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.09 1.42 6.26 -2.38 -0.01 1.41 16 43 H 0.07 1.62 8.08 -2.38 -0.02 1.60 16 44 H 0.07 1.68 7.90 -2.39 -0.02 1.66 16 45 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 46 H 0.15 1.63 6.30 -2.91 -0.02 1.61 16 47 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 48 H 0.06 0.45 7.66 -2.38 -0.02 0.44 16 49 H 0.06 0.46 7.66 -2.39 -0.02 0.44 16 50 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 51 H 0.14 2.15 8.04 -2.91 -0.02 2.13 16 Total: -1.00 -68.30 410.92 4.04 -64.26 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: 0.18 Total: 24.12 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: 6.83 Total: 3.19 kcal Atomic # 7 Polarization: -103.14 SS G_CDS: -3.98 Total: -107.12 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -1.02 Total: -30.90 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -68.30 4.04 -64.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713497377.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.593 kcal (2) G-P(sol) polarization free energy of solvation -68.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds