Wall clock time and date at job start Tue Mar 31 2020 18:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46505 * 109.46955 * 2 1 4 4 C 1.36935 * 119.99812 * 272.08523 * 3 2 1 5 5 H 1.08002 * 120.00328 * 39.04122 * 4 3 2 6 6 C 1.38815 * 119.99905 * 219.04507 * 4 3 2 7 7 N 1.31620 * 119.99693 * 19.78847 * 6 4 3 8 8 Si 1.86801 * 120.00031 * 199.78651 * 6 4 3 9 9 H 1.48499 * 109.46950 * 60.00136 * 8 6 4 10 10 H 1.48497 * 109.47044 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46903 * 300.00049 * 8 6 4 12 12 C 1.46495 * 119.99929 * 92.08844 * 3 2 1 13 13 C 1.53002 * 109.46870 * 269.99625 * 12 3 2 14 14 N 1.46498 * 109.47215 * 180.02562 * 13 12 3 15 15 C 1.34777 * 120.00145 * 180.02562 * 14 13 12 16 16 O 1.21274 * 120.00080 * 359.97438 * 15 14 13 17 17 C 1.50699 * 119.99844 * 180.02562 * 15 14 13 18 18 C 1.50704 * 109.47018 * 179.97438 * 17 15 14 19 19 C 1.38284 * 119.97142 * 269.97178 * 18 17 15 20 20 C 1.38236 * 120.11305 * 180.02562 * 19 18 17 21 21 C 1.38170 * 120.05668 * 359.68261 * 20 19 18 22 22 C 1.38718 * 119.94018 * 0.61735 * 21 20 19 23 23 O 1.35898 * 120.05420 * 179.68162 * 22 21 20 24 24 C 1.42898 * 116.99812 * 174.59335 * 23 22 21 25 25 C 1.52996 * 109.47744 * 86.92159 * 24 23 22 26 26 C 1.52996 * 109.47244 * 206.92368 * 24 23 22 27 27 C 1.38122 * 119.96997 * 89.99935 * 18 17 15 28 28 H 1.08994 * 109.47027 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47134 * 300.00402 * 1 2 3 30 30 H 1.09004 * 109.46775 * 60.00313 * 1 2 3 31 31 H 1.09003 * 109.46751 * 239.99671 * 2 1 3 32 32 H 1.08998 * 109.46642 * 120.00073 * 2 1 3 33 33 H 0.96999 * 119.99949 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.46896 * 150.00121 * 12 3 2 35 35 H 1.09003 * 109.47047 * 29.99310 * 12 3 2 36 36 H 1.09002 * 109.46853 * 60.00045 * 13 12 3 37 37 H 1.08996 * 109.47352 * 299.99970 * 13 12 3 38 38 H 0.97010 * 119.99699 * 0.02562 * 14 13 12 39 39 H 1.09002 * 109.47493 * 59.99190 * 17 15 14 40 40 H 1.09007 * 109.47137 * 299.99225 * 17 15 14 41 41 H 1.08000 * 119.94378 * 0.02562 * 19 18 17 42 42 H 1.08006 * 119.97519 * 179.97438 * 20 19 18 43 43 H 1.08001 * 120.03394 * 180.30135 * 21 20 19 44 44 H 1.09011 * 109.47253 * 326.91996 * 24 23 22 45 45 H 1.09000 * 109.47749 * 179.97438 * 25 24 23 46 46 H 1.09005 * 109.47124 * 300.00057 * 25 24 23 47 47 H 1.09004 * 109.47228 * 59.99798 * 25 24 23 48 48 H 1.09007 * 109.47237 * 59.99633 * 26 24 23 49 49 H 1.09000 * 109.47512 * 179.97438 * 26 24 23 50 50 H 1.08998 * 109.46998 * 299.99836 * 26 24 23 51 51 H 1.08002 * 120.03202 * 0.02562 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2059 2.0411 -1.1851 5 1 1.5026 1.9089 -1.9941 6 6 3.3000 2.8801 -1.3469 7 7 4.3451 2.7583 -0.5562 8 14 3.2889 4.1817 -2.6867 9 1 2.1533 5.1121 -2.4635 10 1 4.5652 4.9399 -2.6507 11 1 3.1397 3.5272 -4.0113 12 6 2.3061 2.0564 1.2679 13 6 1.0471 2.7720 1.7617 14 7 1.3350 3.4477 3.0293 15 6 0.3675 4.1468 3.6552 16 8 -0.7413 4.2169 3.1688 17 6 0.6638 4.8424 4.9588 18 6 -0.5763 5.5471 5.4453 19 6 -0.8198 6.8554 5.0694 20 6 -1.9561 7.5048 5.5144 21 6 -2.8550 6.8457 6.3309 22 6 -2.6099 5.5353 6.7145 23 8 -3.4892 4.8870 7.5227 24 6 -3.2352 3.5046 7.7809 25 6 -2.2905 3.3743 8.9773 26 6 -4.5535 2.7933 8.0922 27 6 -1.4684 4.8858 6.2667 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.1098 3.3442 -0.6694 34 1 3.1032 2.7848 1.1188 35 1 2.6199 1.3206 2.0083 36 1 0.2500 2.0436 1.9106 37 1 0.7333 3.5078 1.0213 38 1 2.2220 3.3920 3.4181 39 1 1.4604 5.5711 4.8090 40 1 0.9785 4.1072 5.6995 41 1 -0.1210 7.3707 4.4271 42 1 -2.1439 8.5268 5.2198 43 1 -3.7450 7.3519 6.6744 44 1 -2.7752 3.0496 6.9035 45 1 -2.0971 2.3198 9.1745 46 1 -1.3512 3.8810 8.7555 47 1 -2.7504 3.8292 9.8546 48 1 -5.2265 2.8861 7.2398 49 1 -4.3598 1.7388 8.2886 50 1 -5.0134 3.2482 8.9694 51 1 -1.2774 3.8643 6.5607 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713498319.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:53 Heat of formation + Delta-G solvation = -43.562645 kcal Electronic energy + Delta-G solvation = -28690.350078 eV Core-core repulsion = 24783.266331 eV Total energy + Delta-G solvation = -3907.083747 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.51675 -39.31627 -37.74942 -36.29748 -34.04455 -33.69332 -32.45428 -31.90536 -30.08396 -29.67954 -28.22504 -27.58049 -26.80965 -24.21999 -23.44856 -22.29857 -21.41990 -20.97463 -20.42460 -19.92122 -18.07649 -17.04147 -16.41396 -16.28133 -15.98513 -15.63558 -15.36150 -15.20767 -14.82344 -14.56307 -14.18841 -13.89770 -13.69314 -13.57396 -13.38301 -13.12596 -12.96952 -12.82371 -12.60312 -12.45944 -12.36990 -12.15678 -11.97865 -11.82484 -11.55815 -11.53563 -11.34253 -11.12719 -10.91531 -10.77443 -10.77024 -10.64020 -10.53610 -10.11459 -9.88777 -9.84921 -9.53432 -8.86691 -8.58103 -8.44742 -8.20151 -6.62220 -5.85235 -3.46448 1.26077 1.42005 2.96786 3.02385 3.34230 3.39760 3.43872 3.49476 3.88821 4.44499 4.45637 4.53328 4.62799 4.72364 4.82200 4.95305 5.14230 5.16249 5.21387 5.25523 5.27488 5.34756 5.37623 5.41236 5.44511 5.52761 5.53895 5.67578 5.77584 5.83194 5.92835 5.97638 6.11779 6.16173 6.23575 6.36768 6.38374 6.41054 6.49112 6.54937 6.68293 6.72452 6.88888 6.90108 7.02132 7.14977 7.34658 7.52410 7.78146 7.93734 8.47414 8.60874 9.13267 9.74149 10.33156 11.14716 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014151 B = 0.002497 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.209680 B =11212.464979 C =12349.785811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.141 3.859 3 N -0.580 5.580 4 C -0.262 4.262 5 H 0.060 0.940 6 C 0.015 3.985 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.290 1.290 11 H -0.280 1.280 12 C 0.139 3.861 13 C 0.097 3.903 14 N -0.722 5.722 15 C 0.507 3.493 16 O -0.539 6.539 17 C -0.108 4.108 18 C -0.020 4.020 19 C -0.143 4.143 20 C -0.080 4.080 21 C -0.157 4.157 22 C 0.130 3.870 23 O -0.313 6.313 24 C 0.074 3.926 25 C -0.178 4.178 26 C -0.149 4.149 27 C -0.194 4.194 28 H 0.036 0.964 29 H 0.044 0.956 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.032 0.968 33 H 0.256 0.744 34 H 0.097 0.903 35 H 0.028 0.972 36 H 0.051 0.949 37 H 0.063 0.937 38 H 0.397 0.603 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.122 0.878 42 H 0.128 0.872 43 H 0.127 0.873 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.066 0.934 48 H 0.065 0.935 49 H 0.076 0.924 50 H 0.065 0.935 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.694 3.442 19.564 22.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.015 3.985 3 N -0.300 5.300 4 C -0.391 4.391 5 H 0.078 0.922 6 C -0.186 4.186 7 N -0.531 5.531 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.216 1.216 11 H -0.206 1.206 12 C 0.012 3.988 13 C -0.028 4.028 14 N -0.373 5.373 15 C 0.292 3.708 16 O -0.416 6.416 17 C -0.148 4.148 18 C -0.020 4.020 19 C -0.161 4.161 20 C -0.098 4.098 21 C -0.176 4.176 22 C 0.085 3.915 23 O -0.227 6.227 24 C 0.018 3.982 25 C -0.235 4.235 26 C -0.206 4.206 27 C -0.213 4.213 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.115 0.885 35 H 0.046 0.954 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.230 0.770 39 H 0.122 0.878 40 H 0.118 0.882 41 H 0.140 0.860 42 H 0.146 0.854 43 H 0.145 0.855 44 H 0.094 0.906 45 H 0.090 0.910 46 H 0.082 0.918 47 H 0.085 0.915 48 H 0.084 0.916 49 H 0.095 0.905 50 H 0.084 0.916 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.477 3.592 19.262 22.219 hybrid contribution 0.596 0.531 -0.590 0.993 sum -9.881 4.123 18.672 21.524 Atomic orbital electron populations 1.22415 0.99987 0.99077 1.01372 1.20884 0.91653 0.87028 0.98917 1.43590 1.76456 1.08242 1.01749 1.18977 1.04462 1.23154 0.92543 0.92227 1.25235 0.94236 1.01142 0.97975 1.69967 1.04333 1.38303 1.40486 0.86450 0.76928 0.81975 0.81938 1.20738 1.21552 1.20581 1.21038 0.94555 0.96631 0.86622 1.22467 1.01385 0.96117 0.82831 1.46153 1.13709 1.52385 1.25047 1.20382 0.85157 0.79331 0.85918 1.90714 1.22610 1.61299 1.66950 1.20754 0.97185 1.00632 0.96201 1.19079 0.94675 0.93595 0.94667 1.20909 0.98841 0.94726 1.01648 1.20885 0.93366 0.99566 0.95975 1.20381 1.01647 0.92867 1.02667 1.18902 0.89032 0.92391 0.91185 1.86094 1.48898 1.24326 1.63371 1.22453 0.97372 0.80146 0.98258 1.22360 0.99868 1.02753 0.98561 1.21857 0.95942 0.99854 1.02913 1.21051 0.95858 1.00528 1.03876 0.94453 0.93688 0.93138 0.93383 0.94911 0.93452 0.88496 0.95384 0.93069 0.91867 0.76977 0.87791 0.88209 0.85996 0.85444 0.85541 0.90625 0.90988 0.91819 0.91511 0.91598 0.90521 0.91566 0.85592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 10.23 37.16 0.38 -2.76 16 2 C 0.14 2.96 6.43 -4.03 -0.03 2.93 16 3 N -0.58 -14.05 2.42 -173.23 -0.42 -14.47 16 4 C -0.26 -7.01 9.46 -15.06 -0.14 -7.16 16 5 H 0.06 1.61 7.90 -52.49 -0.41 1.20 16 6 C 0.01 0.39 4.98 -17.43 -0.09 0.31 16 7 N -0.89 -24.60 11.47 55.49 0.64 -23.96 16 8 Si 0.90 21.33 29.60 -169.99 -5.03 16.30 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 C 0.14 3.06 5.45 -4.04 -0.02 3.04 16 13 C 0.10 1.96 6.00 -4.04 -0.02 1.94 16 14 N -0.72 -11.71 5.56 -60.30 -0.33 -12.05 16 15 C 0.51 8.26 7.82 -10.99 -0.09 8.17 16 16 O -0.54 -11.17 16.03 5.56 0.09 -11.08 16 17 C -0.11 -1.25 5.83 -29.03 -0.17 -1.42 16 18 C -0.02 -0.25 4.37 -104.65 -0.46 -0.71 16 19 C -0.14 -1.79 9.70 -39.57 -0.38 -2.17 16 20 C -0.08 -0.91 10.04 -39.61 -0.40 -1.31 16 21 C -0.16 -1.88 9.99 -39.43 -0.39 -2.27 16 22 C 0.13 1.66 6.62 -39.21 -0.26 1.40 16 23 O -0.31 -3.74 9.79 -19.42 -0.19 -3.93 16 24 C 0.07 0.69 2.83 -26.74 -0.08 0.62 16 25 C -0.18 -1.36 9.23 37.16 0.34 -1.02 16 26 C -0.15 -1.12 9.56 37.16 0.36 -0.76 16 27 C -0.19 -2.47 8.00 -39.43 -0.32 -2.78 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.04 0.84 6.40 -51.93 -0.33 0.51 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.05 1.03 8.06 -51.93 -0.42 0.61 16 32 H 0.03 0.64 7.87 -51.93 -0.41 0.23 16 33 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 34 H 0.10 2.39 5.56 -51.93 -0.29 2.10 16 35 H 0.03 0.57 7.88 -51.93 -0.41 0.16 16 36 H 0.05 1.07 6.40 -51.93 -0.33 0.73 16 37 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 38 H 0.40 5.29 8.47 -40.82 -0.35 4.94 16 39 H 0.10 0.99 8.08 -51.93 -0.42 0.57 16 40 H 0.10 0.90 8.09 -51.92 -0.42 0.48 16 41 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 42 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 43 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 44 H 0.08 0.76 6.17 -51.92 -0.32 0.44 16 45 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.06 0.52 7.16 -51.93 -0.37 0.15 16 47 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 49 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 50 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.13 1.43 5.52 -52.49 -0.29 1.14 16 LS Contribution 413.92 15.07 6.24 6.24 Total: -1.00 -32.26 413.92 -9.33 -41.59 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -8.56 Total: 5.34 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -1.76 Total: -3.97 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: -0.12 Total: -50.48 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.10 Total: -15.01 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -32.26 -9.33 -41.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713498319.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.977 kcal (2) G-P(sol) polarization free energy of solvation -32.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds