Wall clock time and date at job start Tue Mar 31 2020 18:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46505 * 109.46955 * 2 1 4 4 C 1.36935 * 119.99812 * 272.08523 * 3 2 1 5 5 H 1.08002 * 120.00328 * 39.04122 * 4 3 2 6 6 C 1.38815 * 119.99905 * 219.04507 * 4 3 2 7 7 N 1.31620 * 119.99693 * 19.78847 * 6 4 3 8 8 Si 1.86801 * 120.00031 * 199.78651 * 6 4 3 9 9 H 1.48499 * 109.46950 * 60.00136 * 8 6 4 10 10 H 1.48497 * 109.47044 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46903 * 300.00049 * 8 6 4 12 12 C 1.46495 * 119.99929 * 92.08844 * 3 2 1 13 13 C 1.53002 * 109.46870 * 269.99625 * 12 3 2 14 14 N 1.46498 * 109.47215 * 180.02562 * 13 12 3 15 15 C 1.34777 * 120.00145 * 180.02562 * 14 13 12 16 16 O 1.21274 * 120.00080 * 359.97438 * 15 14 13 17 17 C 1.50699 * 119.99844 * 180.02562 * 15 14 13 18 18 C 1.50704 * 109.47018 * 179.97438 * 17 15 14 19 19 C 1.38284 * 119.97142 * 269.97178 * 18 17 15 20 20 C 1.38236 * 120.11305 * 180.02562 * 19 18 17 21 21 C 1.38170 * 120.05668 * 359.68261 * 20 19 18 22 22 C 1.38718 * 119.94018 * 0.61735 * 21 20 19 23 23 O 1.35898 * 120.05420 * 179.68162 * 22 21 20 24 24 C 1.42898 * 116.99812 * 174.59335 * 23 22 21 25 25 C 1.52996 * 109.47744 * 86.92159 * 24 23 22 26 26 C 1.52996 * 109.47244 * 206.92368 * 24 23 22 27 27 C 1.38122 * 119.96997 * 89.99935 * 18 17 15 28 28 H 1.08994 * 109.47027 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47134 * 300.00402 * 1 2 3 30 30 H 1.09004 * 109.46775 * 60.00313 * 1 2 3 31 31 H 1.09003 * 109.46751 * 239.99671 * 2 1 3 32 32 H 1.08998 * 109.46642 * 120.00073 * 2 1 3 33 33 H 0.96999 * 119.99949 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.46896 * 150.00121 * 12 3 2 35 35 H 1.09003 * 109.47047 * 29.99310 * 12 3 2 36 36 H 1.09002 * 109.46853 * 60.00045 * 13 12 3 37 37 H 1.08996 * 109.47352 * 299.99970 * 13 12 3 38 38 H 0.97010 * 119.99699 * 0.02562 * 14 13 12 39 39 H 1.09002 * 109.47493 * 59.99190 * 17 15 14 40 40 H 1.09007 * 109.47137 * 299.99225 * 17 15 14 41 41 H 1.08000 * 119.94378 * 0.02562 * 19 18 17 42 42 H 1.08006 * 119.97519 * 179.97438 * 20 19 18 43 43 H 1.08001 * 120.03394 * 180.30135 * 21 20 19 44 44 H 1.09011 * 109.47253 * 326.91996 * 24 23 22 45 45 H 1.09000 * 109.47749 * 179.97438 * 25 24 23 46 46 H 1.09005 * 109.47124 * 300.00057 * 25 24 23 47 47 H 1.09004 * 109.47228 * 59.99798 * 25 24 23 48 48 H 1.09007 * 109.47237 * 59.99633 * 26 24 23 49 49 H 1.09000 * 109.47512 * 179.97438 * 26 24 23 50 50 H 1.08998 * 109.46998 * 299.99836 * 26 24 23 51 51 H 1.08002 * 120.03202 * 0.02562 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2059 2.0411 -1.1851 5 1 1.5026 1.9089 -1.9941 6 6 3.3000 2.8801 -1.3469 7 7 4.3451 2.7583 -0.5562 8 14 3.2889 4.1817 -2.6867 9 1 2.1533 5.1121 -2.4635 10 1 4.5652 4.9399 -2.6507 11 1 3.1397 3.5272 -4.0113 12 6 2.3061 2.0564 1.2679 13 6 1.0471 2.7720 1.7617 14 7 1.3350 3.4477 3.0293 15 6 0.3675 4.1468 3.6552 16 8 -0.7413 4.2169 3.1688 17 6 0.6638 4.8424 4.9588 18 6 -0.5763 5.5471 5.4453 19 6 -0.8198 6.8554 5.0694 20 6 -1.9561 7.5048 5.5144 21 6 -2.8550 6.8457 6.3309 22 6 -2.6099 5.5353 6.7145 23 8 -3.4892 4.8870 7.5227 24 6 -3.2352 3.5046 7.7809 25 6 -2.2905 3.3743 8.9773 26 6 -4.5535 2.7933 8.0922 27 6 -1.4684 4.8858 6.2667 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.1098 3.3442 -0.6694 34 1 3.1032 2.7848 1.1188 35 1 2.6199 1.3206 2.0083 36 1 0.2500 2.0436 1.9106 37 1 0.7333 3.5078 1.0213 38 1 2.2220 3.3920 3.4181 39 1 1.4604 5.5711 4.8090 40 1 0.9785 4.1072 5.6995 41 1 -0.1210 7.3707 4.4271 42 1 -2.1439 8.5268 5.2198 43 1 -3.7450 7.3519 6.6744 44 1 -2.7752 3.0496 6.9035 45 1 -2.0971 2.3198 9.1745 46 1 -1.3512 3.8810 8.7555 47 1 -2.7504 3.8292 9.8546 48 1 -5.2265 2.8861 7.2398 49 1 -4.3598 1.7388 8.2886 50 1 -5.0134 3.2482 8.9694 51 1 -1.2774 3.8643 6.5607 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713498319.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:52 Heat of formation + Delta-G solvation = -61.861304 kcal Electronic energy + Delta-G solvation = -28691.143567 eV Core-core repulsion = 24783.266331 eV Total energy + Delta-G solvation = -3907.877236 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.44139 -40.56693 -38.70503 -38.03937 -35.57713 -34.49757 -33.84477 -33.35261 -31.40794 -30.86120 -29.69658 -28.26083 -28.07363 -26.05893 -24.30204 -23.67539 -22.65789 -22.14346 -21.74127 -21.29799 -19.00799 -18.69934 -17.85679 -17.27039 -17.04983 -16.85087 -16.78180 -16.35395 -16.29138 -15.71136 -15.52678 -15.33321 -15.00323 -14.77651 -14.47748 -14.25314 -14.09411 -14.03299 -13.79757 -13.62238 -13.32827 -13.27013 -13.11648 -13.01769 -12.84033 -12.70987 -12.63285 -12.44780 -12.37706 -12.29639 -12.12325 -12.03829 -11.68890 -11.68161 -11.56590 -11.50732 -10.94314 -10.55676 -9.99619 -9.80393 -9.11520 -8.58148 -7.86237 -5.51752 0.33209 0.49642 1.44069 1.47126 1.53356 1.68515 2.21263 2.27576 2.50084 2.86863 3.21889 3.57728 3.75596 3.80948 3.88198 3.97331 4.04605 4.06967 4.17019 4.30219 4.33383 4.39474 4.45667 4.47236 4.55469 4.58408 4.65550 4.68661 4.74787 4.79867 4.81077 4.83353 4.83466 4.94096 5.05364 5.07784 5.16386 5.23623 5.24074 5.27407 5.35549 5.45691 5.48026 5.54958 5.62586 5.65613 5.75065 5.86018 6.45372 6.48505 6.65552 7.14808 7.32832 7.81887 8.34734 9.09247 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014151 B = 0.002497 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.209680 B =11212.464979 C =12349.785811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.137 3.863 3 N -0.598 5.598 4 C -0.273 4.273 5 H 0.049 0.951 6 C -0.027 4.027 7 N -0.910 5.910 8 Si 0.952 3.048 9 H -0.286 1.286 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.147 3.853 13 C 0.120 3.880 14 N -0.714 5.714 15 C 0.507 3.493 16 O -0.587 6.587 17 C -0.096 4.096 18 C -0.037 4.037 19 C -0.159 4.159 20 C -0.082 4.082 21 C -0.169 4.169 22 C 0.116 3.884 23 O -0.325 6.325 24 C 0.065 3.935 25 C -0.173 4.173 26 C -0.146 4.146 27 C -0.204 4.204 28 H 0.069 0.931 29 H 0.040 0.960 30 H 0.032 0.968 31 H 0.039 0.961 32 H 0.050 0.950 33 H 0.255 0.745 34 H 0.073 0.927 35 H 0.045 0.955 36 H 0.046 0.954 37 H 0.025 0.975 38 H 0.414 0.586 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.152 0.848 43 H 0.140 0.860 44 H 0.066 0.934 45 H 0.090 0.910 46 H 0.056 0.944 47 H 0.068 0.932 48 H 0.055 0.945 49 H 0.096 0.904 50 H 0.071 0.929 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.662 3.302 21.010 23.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.012 3.988 3 N -0.320 5.320 4 C -0.403 4.403 5 H 0.067 0.933 6 C -0.225 4.225 7 N -0.553 5.553 8 Si 0.780 3.220 9 H -0.213 1.213 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.020 3.980 13 C -0.007 4.007 14 N -0.366 5.366 15 C 0.295 3.705 16 O -0.467 6.467 17 C -0.135 4.135 18 C -0.037 4.037 19 C -0.178 4.178 20 C -0.100 4.100 21 C -0.187 4.187 22 C 0.071 3.929 23 O -0.239 6.239 24 C 0.009 3.991 25 C -0.230 4.230 26 C -0.203 4.203 27 C -0.222 4.222 28 H 0.088 0.912 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.043 0.957 38 H 0.250 0.750 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.149 0.851 42 H 0.170 0.830 43 H 0.158 0.842 44 H 0.084 0.916 45 H 0.109 0.891 46 H 0.076 0.924 47 H 0.087 0.913 48 H 0.074 0.926 49 H 0.115 0.885 50 H 0.090 0.910 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.427 3.437 20.735 23.463 hybrid contribution 0.523 0.526 -1.005 1.249 sum -9.904 3.963 19.730 22.429 Atomic orbital electron populations 1.22240 0.98112 1.00843 1.00285 1.21010 0.93014 0.85513 0.99306 1.43842 1.76818 1.09624 1.01696 1.19109 1.04162 1.23723 0.93353 0.93330 1.25802 0.94076 1.02636 0.99966 1.70055 1.04633 1.38909 1.41723 0.85605 0.76574 0.79779 0.80062 1.21253 1.21207 1.20072 1.20909 0.94335 0.96443 0.86339 1.21897 1.00148 0.94895 0.83717 1.45984 1.14833 1.52093 1.23707 1.21185 0.84068 0.78386 0.86904 1.90695 1.24634 1.62883 1.68494 1.20769 0.97480 1.01453 0.93811 1.19308 0.95344 0.94029 0.95057 1.21191 0.99552 0.95029 1.01990 1.21206 0.92796 1.00671 0.95319 1.20685 1.02318 0.92931 1.02777 1.19142 0.89342 0.92924 0.91505 1.86080 1.49027 1.25589 1.63241 1.22698 0.98731 0.79040 0.98603 1.22325 0.99022 1.03945 0.97705 1.21885 0.94864 1.00887 1.02693 1.21220 0.95941 1.01002 1.04071 0.91207 0.94094 0.94828 0.94290 0.93139 0.93600 0.90882 0.93629 0.93612 0.95693 0.75002 0.85168 0.85051 0.85117 0.83035 0.84248 0.91635 0.89120 0.92449 0.91259 0.92555 0.88520 0.91019 0.84768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.61 10.23 71.98 0.74 -4.87 16 2 C 0.14 5.62 6.43 86.38 0.56 6.17 16 3 N -0.60 -29.07 2.42 -701.98 -1.70 -30.76 16 4 C -0.27 -14.82 9.46 84.03 0.79 -14.02 16 5 H 0.05 2.69 7.90 -2.91 -0.02 2.67 16 6 C -0.03 -1.44 4.98 84.86 0.42 -1.01 16 7 N -0.91 -50.55 11.47 21.65 0.25 -50.30 16 8 Si 0.95 44.15 29.60 68.60 2.03 46.18 16 9 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 10 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 12 C 0.15 6.43 5.45 86.38 0.47 6.90 16 13 C 0.12 4.87 6.00 86.38 0.52 5.39 16 14 N -0.71 -22.48 5.56 -463.07 -2.57 -25.05 16 15 C 0.51 16.01 7.82 87.66 0.69 16.70 16 16 O -0.59 -24.46 16.03 -3.01 -0.05 -24.50 16 17 C -0.10 -2.02 5.83 29.10 0.17 -1.85 16 18 C -0.04 -0.91 4.37 -19.88 -0.09 -1.00 16 19 C -0.16 -3.83 9.70 22.28 0.22 -3.61 16 20 C -0.08 -1.80 10.04 22.25 0.22 -1.57 16 21 C -0.17 -3.93 9.99 22.37 0.22 -3.71 16 22 C 0.12 2.92 6.62 22.51 0.15 3.07 16 23 O -0.32 -7.66 9.79 -92.40 -0.90 -8.57 16 24 C 0.06 1.17 2.83 30.59 0.09 1.26 16 25 C -0.17 -2.38 9.23 71.98 0.66 -1.72 16 26 C -0.15 -2.04 9.56 71.98 0.69 -1.35 16 27 C -0.20 -5.03 8.00 22.37 0.18 -4.85 16 28 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.04 1.49 6.40 -2.39 -0.02 1.48 16 30 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.04 1.65 8.06 -2.39 -0.02 1.63 16 32 H 0.05 1.88 7.87 -2.39 -0.02 1.86 16 33 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16 34 H 0.07 3.61 5.56 -2.39 -0.01 3.60 16 35 H 0.05 1.81 7.88 -2.39 -0.02 1.79 16 36 H 0.05 1.91 6.40 -2.39 -0.02 1.89 16 37 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.41 10.28 8.47 -92.70 -0.79 9.50 16 39 H 0.13 2.09 8.08 -2.39 -0.02 2.07 16 40 H 0.13 1.95 8.09 -2.38 -0.02 1.93 16 41 H 0.13 2.79 8.06 -2.91 -0.02 2.76 16 42 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 43 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 44 H 0.07 1.29 6.17 -2.38 -0.01 1.28 16 45 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.06 0.86 7.16 -2.38 -0.02 0.85 16 47 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 48 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 49 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 50 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 51 H 0.13 2.93 5.52 -2.91 -0.02 2.92 16 Total: -1.00 -70.57 413.92 3.88 -66.69 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: 0.13 Total: 26.39 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: 6.70 Total: -0.07 kcal Atomic # 7 Polarization: -102.09 SS G_CDS: -4.02 Total: -106.11 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -0.95 Total: -33.07 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -70.57 3.88 -66.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713498319.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.824 kcal (2) G-P(sol) polarization free energy of solvation -70.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds