Wall clock time and date at job start Tue Mar 31 2020 18:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 114.00160 * 2 1 4 4 H 1.08997 * 109.47051 * 330.00149 * 3 2 1 5 5 C 1.53002 * 109.47031 * 89.99868 * 3 2 1 6 6 C 1.50699 * 109.47275 * 210.00152 * 3 2 1 7 7 O 1.21284 * 119.99924 * 354.99874 * 6 3 2 8 8 N 1.34773 * 120.00238 * 174.72520 * 6 3 2 9 9 C 1.46494 * 120.00340 * 180.27435 * 8 6 3 10 10 C 1.52993 * 109.47518 * 179.97438 * 9 8 6 11 11 H 1.08993 * 109.47670 * 295.00328 * 10 9 8 12 12 N 1.46503 * 109.46995 * 55.00401 * 10 9 8 13 13 C 1.36936 * 119.99994 * 54.93336 * 12 10 9 14 14 H 1.07993 * 120.00270 * 5.46596 * 13 12 10 15 15 C 1.38814 * 119.99814 * 185.46515 * 13 12 10 16 16 N 1.31617 * 120.00061 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99852 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46942 * 60.00036 * 17 15 13 19 19 H 1.48500 * 109.46893 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47074 * 300.00239 * 17 15 13 21 21 C 1.50703 * 109.47370 * 175.00109 * 10 9 8 22 22 C 1.38235 * 119.99897 * 206.65435 * 21 10 9 23 23 C 1.38236 * 119.99877 * 179.80981 * 22 21 10 24 24 C 1.38231 * 119.99733 * 0.41824 * 23 22 21 25 25 C 1.50706 * 120.00069 * 179.79147 * 24 23 22 26 26 C 1.52999 * 109.46787 * 300.02249 * 25 24 23 27 27 C 1.52995 * 109.47123 * 60.01920 * 25 24 23 28 28 C 1.38233 * 120.00454 * 359.81518 * 24 23 22 29 29 C 1.38227 * 120.00054 * 26.92746 * 21 10 9 30 30 H 1.09000 * 109.47198 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46812 * 299.99973 * 1 2 3 32 32 H 1.08997 * 109.47153 * 59.99296 * 1 2 3 33 33 H 1.09004 * 109.46594 * 60.00176 * 5 3 2 34 34 H 1.08994 * 109.47113 * 179.97438 * 5 3 2 35 35 H 1.08993 * 109.47640 * 300.00415 * 5 3 2 36 36 H 0.97007 * 119.99759 * 0.27716 * 8 6 3 37 37 H 1.09003 * 109.47180 * 300.00709 * 9 8 6 38 38 H 1.09005 * 109.46704 * 59.99926 * 9 8 6 39 39 H 0.97006 * 119.99885 * 234.94126 * 12 10 9 40 40 H 0.97002 * 119.99654 * 180.02562 * 16 15 13 41 41 H 1.07999 * 120.00120 * 359.97438 * 22 21 10 42 42 H 1.08001 * 120.00327 * 180.21287 * 23 22 21 43 43 H 1.09001 * 109.47335 * 180.02562 * 25 24 23 44 44 H 1.09000 * 109.47353 * 179.97438 * 26 25 24 45 45 H 1.08997 * 109.47645 * 299.99678 * 26 25 24 46 46 H 1.09002 * 109.47437 * 60.00370 * 26 25 24 47 47 H 1.09005 * 109.46884 * 60.00619 * 27 25 24 48 48 H 1.09005 * 109.47471 * 180.02562 * 27 25 24 49 49 H 1.09001 * 109.47401 * 300.00432 * 27 25 24 50 50 H 1.08000 * 120.00573 * 179.97438 * 28 24 23 51 51 H 1.08002 * 120.00026 * 359.97438 * 29 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 -0.5138 5 6 2.2177 1.7713 1.4425 6 6 3.3386 1.2639 -0.7104 7 8 3.7897 0.2044 -1.0914 8 7 4.0229 2.4046 -0.9273 9 6 5.3113 2.3649 -1.6233 10 6 5.8727 3.7834 -1.7385 11 1 5.2201 4.3820 -2.3740 12 7 5.9467 4.3890 -0.4066 13 6 6.6282 3.7542 0.5973 14 1 7.1847 2.8530 0.3863 15 6 6.6038 4.2690 1.8862 16 7 5.9260 5.3676 2.1433 17 14 7.5329 3.4026 3.2558 18 1 8.9780 3.3505 2.9175 19 1 7.3491 4.1479 4.5270 20 1 7.0108 2.0212 3.4112 21 6 7.2520 3.7303 -2.3435 22 6 8.1682 4.7269 -2.0638 23 6 9.4346 4.6761 -2.6155 24 6 9.7819 3.6333 -3.4538 25 6 11.1611 3.5803 -4.0592 26 6 11.3934 4.8313 -4.9088 27 6 12.2059 3.5206 -2.9431 28 6 8.8641 2.6392 -3.7374 29 6 7.5990 2.6880 -3.1825 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 2.8830 1.0773 1.9563 34 1 2.6614 2.7668 1.4425 35 1 1.2570 1.8014 1.9564 36 1 3.6621 3.2519 -0.6225 37 1 6.0083 1.7423 -1.0622 38 1 5.1728 1.9471 -2.6205 39 1 5.5128 5.2396 -0.2357 40 1 5.9093 5.7275 3.0439 41 1 7.8955 5.5438 -1.4121 42 1 10.1517 5.4528 -2.3943 43 1 11.2486 2.6935 -4.6868 44 1 12.3910 4.7933 -5.3463 45 1 10.6491 4.8740 -5.7040 46 1 11.3059 5.7182 -4.2813 47 1 12.0404 2.6293 -2.3378 48 1 13.2035 3.4827 -3.3809 49 1 12.1183 4.4075 -2.3155 50 1 9.1353 1.8247 -4.3927 51 1 6.8818 1.9115 -3.4042 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714832855.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:11 Heat of formation + Delta-G solvation = -57.315673 kcal Electronic energy + Delta-G solvation = -29470.175550 eV Core-core repulsion = 25562.495427 eV Total energy + Delta-G solvation = -3907.680123 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.69383 -39.21637 -37.48406 -36.46933 -34.57828 -33.44270 -31.92296 -31.00422 -30.40615 -29.13342 -27.09522 -26.99334 -26.76449 -24.68725 -23.56175 -22.95436 -21.77398 -20.57074 -19.90925 -19.31435 -17.49284 -17.12766 -16.72535 -16.02059 -15.51581 -15.45642 -14.91099 -14.67327 -14.57500 -14.19373 -14.15743 -13.84162 -13.64382 -13.39791 -13.36837 -13.04730 -12.98328 -12.75880 -12.49230 -12.28046 -12.23173 -11.91115 -11.81391 -11.69342 -11.63390 -11.29913 -11.08094 -11.04129 -10.89807 -10.87406 -10.72064 -10.36000 -10.28915 -10.06946 -9.86718 -9.72372 -9.17058 -9.03778 -8.44150 -8.33738 -7.96520 -7.14328 -5.87062 -3.18190 1.86595 1.98428 3.05240 3.27804 3.40729 3.44604 3.48402 4.21154 4.28251 4.53947 4.84518 4.92060 4.94517 5.12025 5.14602 5.27529 5.28726 5.33085 5.36318 5.45110 5.47569 5.53702 5.56160 5.59422 5.64175 5.67537 5.81902 5.84850 5.85168 5.85882 5.87460 5.93187 5.97859 6.05270 6.18033 6.28483 6.30617 6.38145 6.40121 6.56201 6.64323 6.66401 6.91532 7.03674 7.10231 7.14600 7.31922 7.57992 7.69536 8.06673 8.29460 8.72682 9.43305 9.90160 10.27570 11.34148 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.010667 B = 0.003528 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.171679 B = 7934.977083 C = 9696.845919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.362 6.362 3 C 0.072 3.928 4 H 0.081 0.919 5 C -0.170 4.170 6 C 0.512 3.488 7 O -0.538 6.538 8 N -0.699 5.699 9 C 0.118 3.882 10 C 0.197 3.803 11 H 0.072 0.928 12 N -0.713 5.713 13 C -0.229 4.229 14 H 0.068 0.932 15 C -0.004 4.004 16 N -0.931 5.931 17 Si 0.897 3.103 18 H -0.286 1.286 19 H -0.292 1.292 20 H -0.285 1.285 21 C -0.081 4.081 22 C -0.074 4.074 23 C -0.123 4.123 24 C -0.092 4.092 25 C -0.053 4.053 26 C -0.142 4.142 27 C -0.144 4.144 28 C -0.127 4.127 29 C -0.124 4.124 30 H 0.087 0.913 31 H 0.042 0.958 32 H 0.041 0.959 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.404 0.596 37 H 0.069 0.931 38 H 0.055 0.945 39 H 0.387 0.613 40 H 0.255 0.745 41 H 0.129 0.871 42 H 0.111 0.889 43 H 0.071 0.929 44 H 0.052 0.948 45 H 0.054 0.946 46 H 0.056 0.944 47 H 0.055 0.945 48 H 0.052 0.948 49 H 0.057 0.943 50 H 0.110 0.890 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.933 -1.232 -10.497 10.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C 0.011 3.989 4 H 0.099 0.901 5 C -0.227 4.227 6 C 0.296 3.704 7 O -0.415 6.415 8 N -0.350 5.350 9 C -0.007 4.007 10 C 0.086 3.914 11 H 0.090 0.910 12 N -0.353 5.353 13 C -0.360 4.360 14 H 0.086 0.914 15 C -0.200 4.200 16 N -0.579 5.579 17 Si 0.728 3.272 18 H -0.213 1.213 19 H -0.218 1.218 20 H -0.212 1.212 21 C -0.084 4.084 22 C -0.092 4.092 23 C -0.141 4.141 24 C -0.092 4.092 25 C -0.072 4.072 26 C -0.199 4.199 27 C -0.201 4.201 28 C -0.145 4.145 29 C -0.142 4.142 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.081 0.919 36 H 0.239 0.761 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.221 0.779 40 H 0.065 0.935 41 H 0.147 0.853 42 H 0.129 0.871 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.075 0.925 48 H 0.071 0.929 49 H 0.076 0.924 50 H 0.128 0.872 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.417 -2.253 -10.617 10.945 hybrid contribution 0.107 0.374 1.261 1.319 sum -1.310 -1.879 -9.356 9.633 Atomic orbital electron populations 1.22835 0.81231 1.02816 0.99846 1.88045 1.19137 1.25787 1.94974 1.21945 0.93730 0.86086 0.97168 0.90102 1.22214 1.02759 1.03238 0.94520 1.20206 0.86178 0.84330 0.79679 1.90670 1.69751 1.29919 1.51113 1.45632 1.21547 1.09155 1.58700 1.21792 0.84443 0.99246 0.95257 1.19346 0.91278 0.92402 0.88374 0.90990 1.42379 1.63710 1.24527 1.04693 1.18994 1.22984 1.06616 0.87433 0.91377 1.24640 1.00415 0.97745 0.97175 1.69628 1.45694 1.22145 1.20437 0.86417 0.79854 0.78983 0.81913 1.21259 1.21758 1.21196 1.20680 0.97902 0.94170 0.95658 1.21022 0.92308 0.98947 0.96924 1.20899 0.96703 0.98270 0.98195 1.19692 0.95033 0.95710 0.98764 1.20057 0.92079 0.98706 0.96326 1.21841 1.00892 0.97552 0.99632 1.21853 0.97557 1.02433 0.98259 1.20862 0.93889 0.98487 1.01291 1.21098 0.96478 0.98410 0.98246 0.89496 0.93972 0.94087 0.91153 0.89813 0.91869 0.76106 0.91221 0.92663 0.77916 0.93494 0.85298 0.87061 0.91067 0.92914 0.92712 0.92460 0.92544 0.92924 0.92389 0.87157 0.86449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.82 101.05 1.09 1.41 16 2 O -0.36 -5.72 9.89 -55.09 -0.54 -6.27 16 3 C 0.07 1.07 3.13 -27.88 -0.09 0.99 16 4 H 0.08 0.96 7.79 -51.93 -0.40 0.55 16 5 C -0.17 -2.46 9.48 37.16 0.35 -2.10 16 6 C 0.51 9.42 7.18 -10.99 -0.08 9.34 16 7 O -0.54 -12.02 16.51 -14.31 -0.24 -12.26 16 8 N -0.70 -12.04 5.35 -60.30 -0.32 -12.36 16 9 C 0.12 2.12 3.87 -4.05 -0.02 2.10 16 10 C 0.20 3.45 3.26 -69.08 -0.23 3.23 16 11 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 12 N -0.71 -14.97 3.81 -54.55 -0.21 -15.18 16 13 C -0.23 -5.66 8.52 -15.06 -0.13 -5.79 16 14 H 0.07 1.78 7.19 -52.49 -0.38 1.40 16 15 C 0.00 -0.10 5.50 -17.43 -0.10 -0.19 16 16 N -0.93 -25.38 13.06 55.49 0.73 -24.65 16 17 Si 0.90 21.86 29.55 -169.99 -5.02 16.84 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 C -0.08 -1.42 5.19 -104.63 -0.54 -1.96 16 22 C -0.07 -1.32 9.03 -39.58 -0.36 -1.68 16 23 C -0.12 -1.95 8.71 -39.58 -0.34 -2.30 16 24 C -0.09 -1.34 4.78 -104.62 -0.50 -1.84 16 25 C -0.05 -0.63 3.09 -91.77 -0.28 -0.91 16 26 C -0.14 -1.47 9.01 37.16 0.33 -1.14 16 27 C -0.14 -1.65 9.01 37.16 0.33 -1.32 16 28 C -0.13 -1.90 9.67 -39.58 -0.38 -2.28 16 29 C -0.12 -1.99 9.14 -39.59 -0.36 -2.35 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.04 0.38 7.87 -51.93 -0.41 -0.02 16 32 H 0.04 0.38 8.08 -51.93 -0.42 -0.04 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.08 1.26 7.94 -51.93 -0.41 0.85 16 35 H 0.06 0.75 7.87 -51.93 -0.41 0.35 16 36 H 0.40 6.48 7.93 -40.82 -0.32 6.16 16 37 H 0.07 1.47 7.31 -51.93 -0.38 1.10 16 38 H 0.06 0.92 6.85 -51.93 -0.36 0.57 16 39 H 0.39 8.59 8.04 -40.82 -0.33 8.26 16 40 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 41 H 0.13 2.50 7.51 -52.49 -0.39 2.11 16 42 H 0.11 1.61 7.10 -52.49 -0.37 1.24 16 43 H 0.07 0.78 7.88 -51.93 -0.41 0.37 16 44 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.61 7.39 -51.93 -0.38 0.22 16 47 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 49 H 0.06 0.69 7.39 -51.93 -0.38 0.30 16 50 H 0.11 1.41 7.95 -52.49 -0.42 1.00 16 51 H 0.12 1.76 6.22 -52.49 -0.33 1.43 16 LS Contribution 412.50 15.07 6.22 6.22 Total: -1.00 -30.40 412.50 -9.28 -39.68 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: -8.60 Total: 14.78 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -1.29 Total: -6.80 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: 0.19 Total: -52.19 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.78 Total: -18.52 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -30.40 -9.28 -39.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714832855.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.632 kcal (2) G-P(sol) polarization free energy of solvation -30.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds