Wall clock time and date at job start Tue Mar 31 2020 18:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.46935 * 2 1 4 4 C 1.46494 * 120.00166 * 269.99699 * 3 2 1 5 5 C 1.52994 * 109.47468 * 270.00247 * 4 3 2 6 6 N 1.46504 * 109.47075 * 179.97438 * 5 4 3 7 7 C 1.36943 * 120.00032 * 179.97438 * 6 5 4 8 8 H 1.07999 * 119.99398 * 0.02562 * 7 6 5 9 9 C 1.38808 * 119.99962 * 179.97438 * 7 6 5 10 10 N 1.31618 * 120.00018 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99934 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47022 * 90.00011 * 11 9 7 13 13 H 1.48498 * 109.47185 * 209.99847 * 11 9 7 14 14 H 1.48507 * 109.46998 * 330.00381 * 11 9 7 15 15 C 1.34778 * 120.00002 * 90.00251 * 3 2 1 16 16 O 1.21282 * 120.00237 * 179.97438 * 15 3 2 17 17 C 1.50707 * 120.00105 * 359.97438 * 15 3 2 18 18 C 1.52991 * 109.47416 * 180.02562 * 17 15 3 19 19 O 1.42901 * 109.47372 * 180.02562 * 18 17 15 20 20 C 1.35906 * 117.00155 * 180.02562 * 19 18 17 21 21 C 1.38755 * 120.05296 * 359.97438 * 20 19 18 22 22 C 1.38125 * 119.93999 * 180.27973 * 21 20 19 23 23 C 1.38289 * 120.05202 * 359.48967 * 22 21 20 24 24 C 1.50706 * 119.93791 * 180.25765 * 23 22 21 25 25 C 1.38237 * 120.11494 * 0.50894 * 23 22 21 26 26 C 1.50702 * 119.97414 * 179.72543 * 25 23 22 27 27 C 1.38167 * 120.05858 * 359.74537 * 25 23 22 28 28 H 1.09003 * 109.46948 * 299.99452 * 1 2 3 29 29 H 1.08993 * 109.47053 * 60.00075 * 1 2 3 30 30 H 1.09003 * 109.46792 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47404 * 239.99927 * 2 1 3 32 32 H 1.09006 * 109.47244 * 120.00058 * 2 1 3 33 33 H 1.08999 * 109.46922 * 30.00861 * 4 3 2 34 34 H 1.09006 * 109.47191 * 149.99920 * 4 3 2 35 35 H 1.09002 * 109.46971 * 299.99774 * 5 4 3 36 36 H 1.09003 * 109.47421 * 60.00134 * 5 4 3 37 37 H 0.96996 * 120.00520 * 0.02562 * 6 5 4 38 38 H 0.96999 * 119.99556 * 179.97438 * 10 9 7 39 39 H 1.09003 * 109.47146 * 59.99567 * 17 15 3 40 40 H 1.09003 * 109.46561 * 299.99947 * 17 15 3 41 41 H 1.09003 * 109.47447 * 59.99591 * 18 17 15 42 42 H 1.09006 * 109.46818 * 299.99919 * 18 17 15 43 43 H 1.08002 * 120.02789 * 359.97438 * 21 20 19 44 44 H 1.07995 * 119.96669 * 179.72334 * 22 21 20 45 45 H 1.08995 * 109.47080 * 270.24804 * 24 23 22 46 46 H 1.08993 * 109.47243 * 30.25404 * 24 23 22 47 47 H 1.09001 * 109.46983 * 150.25353 * 24 23 22 48 48 H 1.08996 * 109.47216 * 270.02415 * 26 25 23 49 49 H 1.09001 * 109.47177 * 30.02395 * 26 25 23 50 50 H 1.09001 * 109.47352 * 150.01918 * 26 25 23 51 51 H 1.07993 * 120.03379 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7074 1.8315 -1.7103 6 7 3.9514 2.5216 -2.9794 7 6 5.1838 2.4495 -3.5722 8 1 5.9756 1.8835 -3.1043 9 6 5.4147 3.1030 -4.7748 10 7 4.4494 3.7924 -5.3452 11 14 7.0956 3.0040 -5.5838 12 1 7.1371 1.8339 -6.4973 13 1 7.3460 4.2459 -6.3586 14 1 8.1398 2.8534 -4.5387 15 6 2.2429 2.0166 1.1672 16 8 2.6476 3.1599 1.1673 17 6 1.9913 1.3063 2.4724 18 6 2.3222 2.2438 3.6353 19 8 2.0842 1.5701 4.8728 20 6 2.3300 2.2683 6.0127 21 6 2.7914 3.5749 5.9413 22 6 3.0460 4.2803 7.1012 23 6 2.8313 3.6890 8.3327 24 6 3.1045 4.4630 9.5966 25 6 2.3716 2.3874 8.4064 26 6 2.1447 1.7440 9.7501 27 6 2.1204 1.6756 7.2491 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.5816 1.6878 -2.0283 34 1 2.0955 3.1411 -1.1383 35 1 4.3882 2.2156 -0.9507 36 1 3.8745 0.7622 -1.8407 37 1 3.2403 3.0303 -3.3994 38 1 4.6110 4.2493 -6.1854 39 1 2.6211 0.4185 2.5303 40 1 0.9432 1.0126 2.5299 41 1 1.6921 3.1313 3.5772 42 1 3.3703 2.5379 3.5779 43 1 2.9561 4.0382 4.9797 44 1 3.4094 5.2958 7.0462 45 1 4.1392 4.3074 9.9015 46 1 2.9344 5.5245 9.4165 47 1 2.4372 4.1170 10.3860 48 1 3.0590 1.2470 10.0741 49 1 1.8694 2.5081 10.4770 50 1 1.3413 1.0115 9.6712 51 1 1.7617 0.6586 7.3071 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715737370.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:51 Heat of formation + Delta-G solvation = -48.847439 kcal Electronic energy + Delta-G solvation = -27795.600832 eV Core-core repulsion = 23888.287919 eV Total energy + Delta-G solvation = -3907.312912 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.57067 -39.92898 -38.22098 -36.29010 -34.64193 -33.17744 -32.67213 -31.94778 -31.21881 -30.33594 -28.12427 -27.48088 -26.23717 -24.75866 -23.69427 -23.08961 -22.34681 -21.43051 -20.63226 -18.99985 -18.09335 -17.23981 -16.87925 -16.64455 -16.40542 -15.88967 -15.51269 -15.18146 -14.65038 -14.52385 -14.40235 -13.99840 -13.96383 -13.73227 -13.62100 -13.48015 -13.38637 -13.12726 -12.98155 -12.88838 -12.66347 -12.49895 -12.28678 -12.09395 -11.84033 -11.71757 -11.51258 -11.29315 -11.23545 -10.99738 -10.94792 -10.88218 -10.77715 -10.67289 -10.11090 -9.84225 -9.68733 -9.04288 -8.86939 -8.58219 -8.25041 -6.92927 -5.75738 -3.05011 1.07213 1.18280 2.61297 2.64331 3.28149 3.44631 3.46651 3.49773 3.51957 4.40751 4.47970 4.53284 4.61374 4.65981 4.69580 4.76131 4.79861 4.85788 4.93180 5.05754 5.08016 5.16469 5.17834 5.25766 5.31487 5.38140 5.48157 5.48443 5.50710 5.51629 5.52459 5.59840 5.63669 5.65372 5.74446 5.81140 5.82981 6.01629 6.05185 6.09272 6.13533 6.17124 6.39155 6.53549 6.55584 6.72969 6.89600 7.19455 7.44130 7.70787 8.19120 8.42770 9.53685 10.09739 10.44780 11.47130 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.015403 B = 0.001870 C = 0.001722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.348890 B =14970.722715 C =16258.759453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.100 3.900 3 N -0.604 5.604 4 C 0.108 3.892 5 C 0.143 3.857 6 N -0.730 5.730 7 C -0.238 4.238 8 H 0.070 0.930 9 C -0.014 4.014 10 N -0.933 5.933 11 Si 0.909 3.091 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.282 1.282 15 C 0.517 3.483 16 O -0.534 6.534 17 C -0.138 4.138 18 C 0.075 3.925 19 O -0.318 6.318 20 C 0.133 3.867 21 C -0.208 4.208 22 C -0.076 4.076 23 C -0.129 4.129 24 C -0.111 4.111 25 C -0.051 4.051 26 C -0.117 4.117 27 C -0.152 4.152 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.022 0.978 36 H 0.018 0.982 37 H 0.384 0.616 38 H 0.255 0.745 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.132 0.868 44 H 0.124 0.876 45 H 0.067 0.933 46 H 0.063 0.937 47 H 0.068 0.932 48 H 0.072 0.928 49 H 0.072 0.928 50 H 0.067 0.933 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.984 -6.999 29.359 31.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.023 4.023 3 N -0.337 5.337 4 C -0.015 4.015 5 C 0.014 3.986 6 N -0.375 5.375 7 C -0.370 4.370 8 H 0.088 0.912 9 C -0.210 4.210 10 N -0.582 5.582 11 Si 0.740 3.260 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.208 1.208 15 C 0.304 3.696 16 O -0.411 6.411 17 C -0.178 4.178 18 C -0.001 4.001 19 O -0.232 6.232 20 C 0.088 3.912 21 C -0.226 4.226 22 C -0.094 4.094 23 C -0.130 4.130 24 C -0.168 4.168 25 C -0.052 4.052 26 C -0.173 4.173 27 C -0.170 4.170 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.040 0.960 36 H 0.036 0.964 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.150 0.850 44 H 0.142 0.858 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.086 0.914 48 H 0.091 0.909 49 H 0.091 0.909 50 H 0.086 0.914 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.665 -6.620 29.282 31.539 hybrid contribution 0.755 0.230 -0.996 1.271 sum -8.910 -6.390 28.286 30.337 Atomic orbital electron populations 1.22221 0.95811 1.02326 1.02650 1.21641 0.94430 0.82469 1.03740 1.47907 1.65341 1.14317 1.06168 1.21716 0.98196 0.98414 0.83125 1.20904 0.92709 0.95520 0.89418 1.42208 1.12902 1.60814 1.21576 1.19208 0.89294 1.26138 1.02327 0.91201 1.24751 0.97876 1.00326 0.98045 1.69662 1.31590 1.37405 1.19517 0.86158 0.83643 0.76972 0.79234 1.21701 1.21706 1.20756 1.20194 0.77727 0.86634 0.85058 1.90757 1.45203 1.17840 1.87304 1.21523 1.05044 1.00086 0.91187 1.22459 1.02253 0.94996 0.80368 1.85951 1.82788 1.41734 1.12734 1.18927 0.95465 0.90603 0.86240 1.21364 1.06585 0.94654 1.00040 1.20837 0.97704 0.99560 0.91264 1.19662 1.03422 0.94596 0.95287 1.20779 1.01847 0.99386 0.94770 1.19507 0.97477 0.93387 0.94785 1.20867 1.02262 1.00689 0.93503 1.20239 1.06777 1.00927 0.89100 0.92571 0.91927 0.91387 0.89593 0.90329 0.90414 0.89676 0.95973 0.96439 0.78266 0.93490 0.87758 0.87869 0.91007 0.90888 0.85033 0.85758 0.91465 0.91807 0.91366 0.90910 0.90949 0.91445 0.85297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 10.24 37.16 0.38 -1.02 16 2 C 0.10 0.97 5.93 -4.04 -0.02 0.94 16 3 N -0.60 -8.23 2.47 -173.69 -0.43 -8.65 16 4 C 0.11 1.84 5.52 -4.05 -0.02 1.81 16 5 C 0.14 3.03 6.58 -4.04 -0.03 3.00 16 6 N -0.73 -19.18 5.60 -59.91 -0.34 -19.52 16 7 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 10 N -0.93 -28.69 13.06 55.49 0.72 -27.96 16 11 Si 0.91 22.85 29.55 -169.99 -5.02 17.83 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 14 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 15 C 0.52 7.38 7.67 -10.98 -0.08 7.30 16 16 O -0.53 -9.91 15.56 5.56 0.09 -9.82 16 17 C -0.14 -1.42 4.62 -27.88 -0.13 -1.54 16 18 C 0.07 0.84 4.03 37.15 0.15 0.99 16 19 O -0.32 -3.64 10.14 -19.44 -0.20 -3.84 16 20 C 0.13 1.51 6.69 -39.22 -0.26 1.25 16 21 C -0.21 -2.27 9.04 -39.43 -0.36 -2.63 16 22 C -0.08 -0.73 9.69 -39.60 -0.38 -1.12 16 23 C -0.13 -1.15 5.88 -104.60 -0.62 -1.76 16 24 C -0.11 -0.69 9.60 36.01 0.35 -0.34 16 25 C -0.05 -0.45 5.88 -104.65 -0.62 -1.07 16 26 C -0.12 -0.68 9.60 36.01 0.35 -0.34 16 27 C -0.15 -1.51 9.64 -39.43 -0.38 -1.89 16 28 H 0.06 0.44 7.22 -51.93 -0.37 0.07 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.85 8.07 -51.93 -0.42 0.43 16 32 H 0.08 0.59 6.44 -51.93 -0.33 0.26 16 33 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 34 H 0.08 1.62 7.42 -51.93 -0.39 1.23 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.38 10.45 7.67 -40.82 -0.31 10.14 16 38 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.10 0.91 7.40 -51.93 -0.38 0.52 16 40 H 0.10 0.86 7.18 -51.93 -0.37 0.49 16 41 H 0.07 0.83 7.62 -51.93 -0.40 0.43 16 42 H 0.07 0.88 7.62 -51.93 -0.40 0.49 16 43 H 0.13 1.41 6.30 -52.49 -0.33 1.08 16 44 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 45 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.06 0.36 8.09 -51.93 -0.42 -0.06 16 47 H 0.07 0.34 5.94 -51.93 -0.31 0.03 16 48 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 49 H 0.07 0.34 5.94 -51.93 -0.31 0.04 16 50 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 51 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 413.99 15.07 6.24 6.24 Total: -1.00 -34.59 413.99 -9.37 -43.96 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -8.51 Total: 5.75 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -1.92 Total: -3.98 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: -0.04 Total: -56.13 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -0.11 Total: -13.66 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -34.59 -9.37 -43.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715737370.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.887 kcal (2) G-P(sol) polarization free energy of solvation -34.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds