Wall clock time and date at job start Tue Mar 31 2020 18:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.46935 * 2 1 4 4 C 1.46494 * 120.00166 * 269.99699 * 3 2 1 5 5 C 1.52994 * 109.47468 * 270.00247 * 4 3 2 6 6 N 1.46504 * 109.47075 * 179.97438 * 5 4 3 7 7 C 1.36943 * 120.00032 * 179.97438 * 6 5 4 8 8 H 1.07999 * 119.99398 * 0.02562 * 7 6 5 9 9 C 1.38808 * 119.99962 * 179.97438 * 7 6 5 10 10 N 1.31618 * 120.00018 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99934 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47022 * 90.00011 * 11 9 7 13 13 H 1.48498 * 109.47185 * 209.99847 * 11 9 7 14 14 H 1.48507 * 109.46998 * 330.00381 * 11 9 7 15 15 C 1.34778 * 120.00002 * 90.00251 * 3 2 1 16 16 O 1.21282 * 120.00237 * 179.97438 * 15 3 2 17 17 C 1.50707 * 120.00105 * 359.97438 * 15 3 2 18 18 C 1.52991 * 109.47416 * 180.02562 * 17 15 3 19 19 O 1.42901 * 109.47372 * 180.02562 * 18 17 15 20 20 C 1.35906 * 117.00155 * 180.02562 * 19 18 17 21 21 C 1.38755 * 120.05296 * 359.97438 * 20 19 18 22 22 C 1.38125 * 119.93999 * 180.27973 * 21 20 19 23 23 C 1.38289 * 120.05202 * 359.48967 * 22 21 20 24 24 C 1.50706 * 119.93791 * 180.25765 * 23 22 21 25 25 C 1.38237 * 120.11494 * 0.50894 * 23 22 21 26 26 C 1.50702 * 119.97414 * 179.72543 * 25 23 22 27 27 C 1.38167 * 120.05858 * 359.74537 * 25 23 22 28 28 H 1.09003 * 109.46948 * 299.99452 * 1 2 3 29 29 H 1.08993 * 109.47053 * 60.00075 * 1 2 3 30 30 H 1.09003 * 109.46792 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47404 * 239.99927 * 2 1 3 32 32 H 1.09006 * 109.47244 * 120.00058 * 2 1 3 33 33 H 1.08999 * 109.46922 * 30.00861 * 4 3 2 34 34 H 1.09006 * 109.47191 * 149.99920 * 4 3 2 35 35 H 1.09002 * 109.46971 * 299.99774 * 5 4 3 36 36 H 1.09003 * 109.47421 * 60.00134 * 5 4 3 37 37 H 0.96996 * 120.00520 * 0.02562 * 6 5 4 38 38 H 0.96999 * 119.99556 * 179.97438 * 10 9 7 39 39 H 1.09003 * 109.47146 * 59.99567 * 17 15 3 40 40 H 1.09003 * 109.46561 * 299.99947 * 17 15 3 41 41 H 1.09003 * 109.47447 * 59.99591 * 18 17 15 42 42 H 1.09006 * 109.46818 * 299.99919 * 18 17 15 43 43 H 1.08002 * 120.02789 * 359.97438 * 21 20 19 44 44 H 1.07995 * 119.96669 * 179.72334 * 22 21 20 45 45 H 1.08995 * 109.47080 * 270.24804 * 24 23 22 46 46 H 1.08993 * 109.47243 * 30.25404 * 24 23 22 47 47 H 1.09001 * 109.46983 * 150.25353 * 24 23 22 48 48 H 1.08996 * 109.47216 * 270.02415 * 26 25 23 49 49 H 1.09001 * 109.47177 * 30.02395 * 26 25 23 50 50 H 1.09001 * 109.47352 * 150.01918 * 26 25 23 51 51 H 1.07993 * 120.03379 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7074 1.8315 -1.7103 6 7 3.9514 2.5216 -2.9794 7 6 5.1838 2.4495 -3.5722 8 1 5.9756 1.8835 -3.1043 9 6 5.4147 3.1030 -4.7748 10 7 4.4494 3.7924 -5.3452 11 14 7.0956 3.0040 -5.5838 12 1 7.1371 1.8339 -6.4973 13 1 7.3460 4.2459 -6.3586 14 1 8.1398 2.8534 -4.5387 15 6 2.2429 2.0166 1.1672 16 8 2.6476 3.1599 1.1673 17 6 1.9913 1.3063 2.4724 18 6 2.3222 2.2438 3.6353 19 8 2.0842 1.5701 4.8728 20 6 2.3300 2.2683 6.0127 21 6 2.7914 3.5749 5.9413 22 6 3.0460 4.2803 7.1012 23 6 2.8313 3.6890 8.3327 24 6 3.1045 4.4630 9.5966 25 6 2.3716 2.3874 8.4064 26 6 2.1447 1.7440 9.7501 27 6 2.1204 1.6756 7.2491 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.5816 1.6878 -2.0283 34 1 2.0955 3.1411 -1.1383 35 1 4.3882 2.2156 -0.9507 36 1 3.8745 0.7622 -1.8407 37 1 3.2403 3.0303 -3.3994 38 1 4.6110 4.2493 -6.1854 39 1 2.6211 0.4185 2.5303 40 1 0.9432 1.0126 2.5299 41 1 1.6921 3.1313 3.5772 42 1 3.3703 2.5379 3.5779 43 1 2.9561 4.0382 4.9797 44 1 3.4094 5.2958 7.0462 45 1 4.1392 4.3074 9.9015 46 1 2.9344 5.5245 9.4165 47 1 2.4372 4.1170 10.3860 48 1 3.0590 1.2470 10.0741 49 1 1.8694 2.5081 10.4770 50 1 1.3413 1.0115 9.6712 51 1 1.7617 0.6586 7.3071 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715737370.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:50 Heat of formation + Delta-G solvation = -69.280683 kcal Electronic energy + Delta-G solvation = -27796.486884 eV Core-core repulsion = 23888.287919 eV Total energy + Delta-G solvation = -3908.198964 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.45721 -40.95755 -39.00046 -37.60735 -36.40671 -34.10152 -33.61046 -33.24737 -32.24050 -31.53159 -29.38707 -28.40563 -26.88950 -26.16411 -24.99633 -24.18887 -23.27124 -22.85868 -21.41011 -20.13363 -19.26396 -18.88664 -17.96077 -17.63895 -17.27167 -17.03886 -16.58288 -16.22972 -16.18877 -15.41448 -15.36648 -15.18356 -15.10433 -14.99053 -14.76787 -14.60338 -14.43651 -14.15420 -13.97219 -13.56181 -13.50395 -13.27218 -13.10220 -12.93574 -12.83821 -12.80164 -12.75039 -12.57694 -12.52087 -12.27560 -12.15576 -12.08504 -11.95421 -11.89107 -11.69023 -11.58727 -11.01631 -10.96772 -9.78808 -9.75988 -9.09117 -9.00635 -8.00152 -5.31101 0.33432 0.43162 1.44260 1.47287 1.50585 1.55757 1.63413 2.30906 2.54581 2.72766 3.32980 3.46353 3.71250 3.84222 3.86508 3.90831 3.99458 4.06015 4.09190 4.16330 4.19512 4.22693 4.33597 4.34764 4.40486 4.43325 4.52940 4.56132 4.66869 4.69372 4.75567 4.81553 4.83760 4.87696 4.95677 4.97188 5.02556 5.05275 5.08250 5.20955 5.22916 5.38391 5.39362 5.41238 5.44558 5.52647 5.71961 5.87158 6.21232 6.33253 6.38360 7.06509 7.27423 7.99021 8.24337 9.23085 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.015403 B = 0.001870 C = 0.001722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.348890 B =14970.722715 C =16258.759453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.093 3.907 3 N -0.601 5.601 4 C 0.123 3.877 5 C 0.149 3.851 6 N -0.743 5.743 7 C -0.252 4.252 8 H 0.073 0.927 9 C -0.073 4.073 10 N -0.967 5.967 11 Si 0.979 3.021 12 H -0.281 1.281 13 H -0.293 1.293 14 H -0.272 1.272 15 C 0.511 3.489 16 O -0.587 6.587 17 C -0.124 4.124 18 C 0.080 3.920 19 O -0.319 6.319 20 C 0.109 3.891 21 C -0.226 4.226 22 C -0.088 4.088 23 C -0.134 4.134 24 C -0.110 4.110 25 C -0.055 4.055 26 C -0.115 4.115 27 C -0.160 4.160 28 H 0.060 0.940 29 H 0.047 0.953 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.094 0.906 34 H 0.059 0.941 35 H -0.001 1.001 36 H 0.031 0.969 37 H 0.375 0.625 38 H 0.253 0.747 39 H 0.128 0.872 40 H 0.131 0.869 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.122 0.878 44 H 0.136 0.864 45 H 0.075 0.925 46 H 0.068 0.932 47 H 0.083 0.917 48 H 0.082 0.918 49 H 0.086 0.914 50 H 0.076 0.924 51 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.224 -9.055 31.430 34.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.028 4.028 3 N -0.333 5.333 4 C -0.001 4.001 5 C 0.021 3.979 6 N -0.386 5.386 7 C -0.384 4.384 8 H 0.091 0.909 9 C -0.266 4.266 10 N -0.617 5.617 11 Si 0.807 3.193 12 H -0.207 1.207 13 H -0.219 1.219 14 H -0.197 1.197 15 C 0.301 3.699 16 O -0.467 6.467 17 C -0.163 4.163 18 C 0.004 3.996 19 O -0.233 6.233 20 C 0.064 3.936 21 C -0.245 4.245 22 C -0.106 4.106 23 C -0.135 4.135 24 C -0.167 4.167 25 C -0.055 4.055 26 C -0.172 4.172 27 C -0.178 4.178 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.111 0.889 31 H 0.104 0.896 32 H 0.126 0.874 33 H 0.112 0.888 34 H 0.078 0.922 35 H 0.017 0.983 36 H 0.049 0.951 37 H 0.207 0.793 38 H 0.062 0.938 39 H 0.146 0.854 40 H 0.149 0.851 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.140 0.860 44 H 0.154 0.846 45 H 0.093 0.907 46 H 0.087 0.913 47 H 0.102 0.898 48 H 0.101 0.899 49 H 0.104 0.896 50 H 0.095 0.905 51 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -9.922 -8.738 31.393 34.063 hybrid contribution 0.814 0.859 -1.536 1.939 sum -9.108 -7.879 29.857 32.194 Atomic orbital electron populations 1.22186 0.94360 1.03771 1.02189 1.21990 0.95598 0.79985 1.05238 1.47995 1.64892 1.15783 1.04651 1.21311 0.95836 0.97624 0.85301 1.20955 0.94877 0.95255 0.86786 1.42394 1.12054 1.61195 1.23003 1.19593 0.90333 1.25847 1.02630 0.90900 1.25635 1.01787 1.00331 0.98815 1.69818 1.33638 1.38415 1.19829 0.85075 0.79182 0.76867 0.78207 1.20722 1.21910 1.19746 1.20929 0.76485 0.86141 0.86378 1.90738 1.47558 1.20327 1.88076 1.21464 1.07190 0.99717 0.87958 1.22318 1.01103 0.95141 0.81052 1.85915 1.83048 1.41699 1.12678 1.19193 0.96719 0.90988 0.86671 1.21428 1.07698 0.95099 1.00269 1.21088 0.97859 1.00221 0.91411 1.20054 1.02439 0.94990 0.95970 1.20839 1.02688 0.99371 0.93761 1.19923 0.96375 0.93399 0.95839 1.20939 1.03092 1.01206 0.91918 1.20512 1.06753 1.01655 0.88920 0.92094 0.93383 0.88931 0.89567 0.87410 0.88788 0.92237 0.98263 0.95100 0.79259 0.93775 0.85372 0.85075 0.92058 0.92524 0.85997 0.84603 0.90657 0.91273 0.89819 0.89917 0.89575 0.90549 0.84066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.24 71.98 0.74 -1.53 16 2 C 0.09 1.56 5.93 86.38 0.51 2.07 16 3 N -0.60 -15.95 2.47 -821.82 -2.03 -17.98 16 4 C 0.12 4.26 5.52 86.38 0.48 4.74 16 5 C 0.15 6.42 6.58 86.38 0.57 6.99 16 6 N -0.74 -39.91 5.60 -343.45 -1.92 -41.83 16 7 C -0.25 -14.75 9.99 84.03 0.84 -13.92 16 8 H 0.07 4.12 7.83 -2.91 -0.02 4.10 16 9 C -0.07 -4.33 5.50 84.86 0.47 -3.86 16 10 N -0.97 -60.39 13.06 21.65 0.28 -60.11 16 11 Si 0.98 47.18 29.55 68.60 2.03 49.21 16 12 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 13 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 14 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 15 C 0.51 14.59 7.67 87.66 0.67 15.27 16 16 O -0.59 -22.83 15.56 -3.04 -0.05 -22.87 16 17 C -0.12 -2.36 4.62 29.85 0.14 -2.22 16 18 C 0.08 1.83 4.03 71.98 0.29 2.12 16 19 O -0.32 -7.24 10.14 -92.49 -0.94 -8.18 16 20 C 0.11 2.50 6.69 22.51 0.15 2.66 16 21 C -0.23 -5.20 9.04 22.37 0.20 -5.00 16 22 C -0.09 -1.72 9.69 22.25 0.22 -1.50 16 23 C -0.13 -2.23 5.88 -19.85 -0.12 -2.35 16 24 C -0.11 -1.14 9.60 71.24 0.68 -0.45 16 25 C -0.06 -0.89 5.88 -19.88 -0.12 -1.01 16 26 C -0.12 -1.05 9.60 71.24 0.68 -0.37 16 27 C -0.16 -3.05 9.64 22.37 0.22 -2.84 16 28 H 0.06 0.78 7.22 -2.39 -0.02 0.77 16 29 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.09 1.48 8.07 -2.39 -0.02 1.47 16 32 H 0.11 1.21 6.44 -2.38 -0.02 1.20 16 33 H 0.09 2.94 8.07 -2.39 -0.02 2.92 16 34 H 0.06 2.38 7.42 -2.38 -0.02 2.36 16 35 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 36 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.38 21.10 7.67 -92.71 -0.71 20.39 16 38 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 39 H 0.13 1.87 7.40 -2.39 -0.02 1.86 16 40 H 0.13 1.81 7.18 -2.39 -0.02 1.79 16 41 H 0.06 1.51 7.62 -2.39 -0.02 1.49 16 42 H 0.06 1.46 7.62 -2.38 -0.02 1.44 16 43 H 0.12 2.91 6.30 -2.91 -0.02 2.89 16 44 H 0.14 2.18 8.06 -2.91 -0.02 2.15 16 45 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.07 0.65 8.09 -2.39 -0.02 0.63 16 47 H 0.08 0.60 5.94 -2.39 -0.01 0.59 16 48 H 0.08 0.62 8.14 -2.39 -0.02 0.61 16 49 H 0.09 0.55 5.94 -2.39 -0.01 0.54 16 50 H 0.08 0.57 8.08 -2.39 -0.02 0.56 16 51 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -76.93 413.99 4.20 -72.74 By element: Atomic # 1 Polarization: 30.04 SS G_CDS: 0.21 Total: 30.24 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: 6.62 Total: -1.21 kcal Atomic # 7 Polarization: -116.25 SS G_CDS: -3.67 Total: -119.93 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -0.98 Total: -31.05 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Total: -76.93 4.20 -72.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715737370.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.457 kcal (2) G-P(sol) polarization free energy of solvation -76.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds