Wall clock time and date at job start Tue Mar 31 2020 19:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42892 * 109.47154 * 2 1 4 4 C 1.35901 * 117.00124 * 180.02562 * 3 2 1 5 5 C 1.38732 * 120.05860 * 180.02562 * 4 3 2 6 6 C 1.38139 * 119.94201 * 180.02562 * 5 4 3 7 7 C 1.38268 * 120.05890 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.94329 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.46862 * 90.00405 * 8 7 6 10 10 C 1.50706 * 109.46862 * 180.02562 * 9 8 7 11 11 O 1.21278 * 119.99858 * 359.97438 * 10 9 8 12 12 N 1.34769 * 119.99793 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99922 * 179.97438 * 12 10 9 14 14 H 1.08999 * 109.47526 * 325.00343 * 13 12 10 15 15 C 1.53002 * 109.47181 * 84.99851 * 13 12 10 16 16 C 1.53001 * 109.47454 * 204.99824 * 13 12 10 17 17 N 1.46493 * 109.46715 * 54.99927 * 16 13 12 18 18 C 1.46497 * 120.00230 * 269.72475 * 17 16 13 19 19 C 1.36941 * 119.99808 * 90.00651 * 17 16 13 20 20 H 1.07997 * 119.99886 * 339.60626 * 19 17 16 21 21 C 1.38813 * 120.00143 * 159.61975 * 19 17 16 22 22 N 1.31625 * 119.99885 * 344.32664 * 21 19 17 23 23 Si 1.86800 * 120.00180 * 164.33427 * 21 19 17 24 24 H 1.48502 * 109.47252 * 59.99386 * 23 21 19 25 25 H 1.48501 * 109.47064 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.46899 * 299.99366 * 23 21 19 27 27 C 1.38260 * 120.10916 * 0.25498 * 7 6 5 28 28 C 1.38147 * 120.05723 * 359.45205 * 27 7 6 29 29 H 1.09008 * 109.46928 * 59.99922 * 1 2 3 30 30 H 1.08997 * 109.47702 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47585 * 300.00520 * 1 2 3 32 32 H 1.09002 * 109.46869 * 239.99665 * 2 1 3 33 33 H 1.08998 * 109.46857 * 120.00083 * 2 1 3 34 34 H 1.07999 * 120.02857 * 359.97438 * 5 4 3 35 35 H 1.08010 * 119.97185 * 180.02562 * 6 5 4 36 36 H 1.08991 * 109.47280 * 330.00035 * 8 7 6 37 37 H 1.08995 * 109.46757 * 209.99725 * 8 7 6 38 38 H 1.08991 * 109.47475 * 59.99749 * 9 8 7 39 39 H 1.09004 * 109.46989 * 299.99072 * 9 8 7 40 40 H 0.97001 * 120.00568 * 359.97438 * 12 10 9 41 41 H 1.08991 * 109.47504 * 180.02562 * 15 13 12 42 42 H 1.09000 * 109.47344 * 300.00490 * 15 13 12 43 43 H 1.09003 * 109.47131 * 60.00201 * 15 13 12 44 44 H 1.08995 * 109.46932 * 295.00078 * 16 13 12 45 45 H 1.08998 * 109.47144 * 175.00335 * 16 13 12 46 46 H 1.09003 * 109.47207 * 265.09032 * 18 17 16 47 47 H 1.09000 * 109.47374 * 25.08841 * 18 17 16 48 48 H 1.09004 * 109.47233 * 145.09041 * 18 17 16 49 49 H 0.96998 * 119.99639 * 179.97438 * 22 21 19 50 50 H 1.07999 * 119.97004 * 179.70384 * 27 7 6 51 51 H 1.07993 * 120.02798 * 180.25020 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5253 -0.0005 5 6 3.8852 2.8067 0.0000 6 6 5.2550 2.9850 -0.0011 7 6 6.0962 1.8876 -0.0032 8 6 7.5903 2.0851 -0.0050 9 6 8.0977 2.1504 1.4369 10 6 9.5917 2.3485 1.4352 11 8 10.1914 2.4290 0.3841 12 7 10.2611 2.4363 2.6015 13 6 11.7135 2.6283 2.5998 14 1 12.1500 2.0920 1.7572 15 6 12.0306 4.1198 2.4744 16 6 12.3007 2.0901 3.9062 17 7 11.8963 0.6935 4.0844 18 6 10.6594 0.3748 4.8018 19 6 12.6775 -0.3145 3.5855 20 1 13.3893 -0.1077 2.8000 21 6 12.5544 -1.6022 4.0891 22 7 11.9320 -1.8056 5.2309 23 14 13.2722 -3.0464 3.1465 24 1 14.7375 -2.8591 2.9944 25 1 13.0089 -4.3037 3.8915 26 1 12.6413 -3.1243 1.8045 27 6 5.5689 0.6095 -0.0096 28 6 4.1997 0.4258 -0.0024 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.2286 3.6642 0.0004 35 1 5.6694 3.9824 -0.0003 36 1 7.8332 3.0154 -0.5182 37 1 8.0663 1.2508 -0.5202 38 1 7.8548 1.2201 1.9502 39 1 7.6216 2.9847 1.9522 40 1 9.7814 2.3723 3.4422 41 1 13.1111 4.2627 2.4727 42 1 11.6123 4.5032 1.5438 43 1 11.5942 4.6562 3.3171 44 1 11.9322 2.6846 4.7422 45 1 13.3883 2.1516 3.8682 46 1 10.8881 0.1716 5.8480 47 1 9.9739 1.2198 4.7373 48 1 10.1957 -0.5042 4.3539 49 1 11.8456 -2.7054 5.5826 50 1 6.2280 -0.2460 -0.0161 51 1 3.7884 -0.5727 -0.0033 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716032499.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:52 Heat of formation + Delta-G solvation = -42.382313 kcal Electronic energy + Delta-G solvation = -28394.469804 eV Core-core repulsion = 24487.437241 eV Total energy + Delta-G solvation = -3907.032564 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.38635 -39.41357 -38.00799 -36.44141 -34.10367 -33.61698 -32.01899 -31.29803 -31.06526 -30.32370 -28.64641 -26.20432 -25.63666 -24.72098 -24.10305 -22.28737 -21.83227 -20.97659 -20.20684 -19.77410 -18.49294 -16.85696 -16.80401 -16.39945 -16.26463 -15.46637 -15.26856 -15.17528 -14.90214 -14.51917 -13.88304 -13.80913 -13.69677 -13.59708 -13.52628 -13.31657 -12.98911 -12.90438 -12.66960 -12.52525 -12.10825 -12.02672 -11.97016 -11.75730 -11.47987 -11.34402 -11.30982 -11.11093 -10.90519 -10.81418 -10.77274 -10.66210 -10.60165 -10.18458 -10.02556 -9.85656 -9.36396 -9.15240 -8.62735 -8.41352 -8.21212 -6.77696 -5.73535 -3.16809 1.18997 1.26501 2.92902 3.12313 3.39893 3.44919 3.47861 3.53958 3.77663 4.50760 4.52761 4.54566 4.68603 4.74766 4.78864 4.87302 5.06760 5.12776 5.16526 5.22508 5.30272 5.36335 5.39326 5.41158 5.46702 5.53411 5.63030 5.65403 5.71561 5.81891 5.83821 5.95957 6.00062 6.09687 6.12166 6.19275 6.21394 6.23339 6.46160 6.54562 6.57778 6.60535 6.62459 6.81464 7.12571 7.20582 7.30788 7.65640 7.80486 8.05395 8.36784 8.74424 9.22156 9.85576 10.32505 11.31435 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011457 B = 0.002414 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.345843 B =11593.826707 C =13119.101199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.319 6.319 4 C 0.121 3.879 5 C -0.151 4.151 6 C -0.077 4.077 7 C -0.114 4.114 8 C -0.059 4.059 9 C -0.136 4.136 10 C 0.512 3.488 11 O -0.554 6.554 12 N -0.705 5.705 13 C 0.116 3.884 14 H 0.083 0.917 15 C -0.158 4.158 16 C 0.143 3.857 17 N -0.598 5.598 18 C 0.168 3.832 19 C -0.251 4.251 20 H 0.068 0.932 21 C 0.001 3.999 22 N -0.909 5.909 23 Si 0.902 3.098 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.285 1.285 27 C -0.074 4.074 28 C -0.206 4.206 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.396 0.604 41 H 0.061 0.939 42 H 0.051 0.949 43 H 0.050 0.950 44 H 0.040 0.960 45 H 0.062 0.938 46 H 0.030 0.970 47 H -0.007 1.007 48 H 0.042 0.958 49 H 0.252 0.748 50 H 0.127 0.873 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.293 8.620 -7.865 22.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.233 6.233 4 C 0.076 3.924 5 C -0.170 4.170 6 C -0.095 4.095 7 C -0.114 4.114 8 C -0.097 4.097 9 C -0.176 4.176 10 C 0.298 3.702 11 O -0.433 6.433 12 N -0.356 5.356 13 C 0.009 3.991 14 H 0.101 0.899 15 C -0.217 4.217 16 C 0.014 3.986 17 N -0.321 5.321 18 C 0.023 3.977 19 C -0.381 4.381 20 H 0.086 0.914 21 C -0.197 4.197 22 N -0.554 5.554 23 Si 0.733 3.267 24 H -0.209 1.209 25 H -0.217 1.217 26 H -0.211 1.211 27 C -0.092 4.092 28 C -0.224 4.224 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.107 0.893 40 H 0.232 0.768 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.058 0.942 45 H 0.080 0.920 46 H 0.048 0.952 47 H 0.011 0.989 48 H 0.061 0.939 49 H 0.062 0.938 50 H 0.145 0.855 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -19.043 8.625 -8.481 22.560 hybrid contribution 0.171 -1.275 0.032 1.287 sum -18.872 7.350 -8.449 21.944 Atomic orbital electron populations 1.21776 0.92781 1.02868 1.03473 1.22772 0.95813 0.82060 1.01494 1.86046 1.19232 1.29239 1.88830 1.18987 0.82109 0.94232 0.97071 1.20396 0.95195 0.94695 1.06725 1.20891 0.91965 0.98841 0.97807 1.19885 0.95915 0.92979 1.02640 1.20253 0.89685 1.04091 0.95665 1.21656 0.92857 1.04252 0.98805 1.20530 0.89545 0.76073 0.84063 1.90651 1.70238 1.51001 1.31379 1.46058 1.08776 1.72627 1.08114 1.21882 0.80101 0.94395 1.02763 0.89891 1.22119 1.01391 0.96926 1.01237 1.21046 0.98198 0.86556 0.92758 1.43833 1.22936 0.99814 1.65471 1.20811 0.85339 0.94884 0.96674 1.19132 1.17406 0.87967 1.13588 0.91444 1.24925 1.00424 0.98291 0.96081 1.70073 1.47159 1.20440 1.17745 0.86362 0.78908 0.82081 0.79399 1.20933 1.21699 1.21138 1.20936 0.94215 0.97104 0.96969 1.21231 0.94359 0.97959 1.08890 0.91575 0.90365 0.91513 0.92068 0.91957 0.85396 0.85307 0.90389 0.90223 0.88879 0.89330 0.76808 0.92042 0.92944 0.93114 0.94174 0.92019 0.95222 0.98903 0.93919 0.93775 0.85521 0.85633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 10.28 37.16 0.38 -0.46 16 2 C 0.05 0.40 5.46 37.16 0.20 0.60 16 3 O -0.32 -3.33 10.14 -19.43 -0.20 -3.53 16 4 C 0.12 1.33 6.69 -39.22 -0.26 1.07 16 5 C -0.15 -1.59 9.99 -39.44 -0.39 -1.98 16 6 C -0.08 -0.79 9.69 -39.61 -0.38 -1.18 16 7 C -0.11 -1.29 5.13 -104.60 -0.54 -1.82 16 8 C -0.06 -0.73 4.63 -27.88 -0.13 -0.86 16 9 C -0.14 -1.72 5.68 -27.88 -0.16 -1.88 16 10 C 0.51 8.55 7.79 -10.99 -0.09 8.47 16 11 O -0.55 -11.16 15.64 5.56 0.09 -11.08 16 12 N -0.70 -11.66 4.53 -53.80 -0.24 -11.90 16 13 C 0.12 2.06 2.88 -67.93 -0.20 1.86 16 14 H 0.08 1.75 7.58 -51.93 -0.39 1.36 16 15 C -0.16 -2.29 9.48 37.16 0.35 -1.94 16 16 C 0.14 2.77 5.29 -4.05 -0.02 2.75 16 17 N -0.60 -14.38 2.78 -181.13 -0.50 -14.88 16 18 C 0.17 3.88 8.52 59.85 0.51 4.39 16 19 C -0.25 -6.85 9.67 -15.06 -0.15 -6.99 16 20 H 0.07 1.83 7.88 -52.49 -0.41 1.42 16 21 C 0.00 0.02 5.05 -17.43 -0.09 -0.07 16 22 N -0.91 -26.18 10.69 55.49 0.59 -25.59 16 23 Si 0.90 22.11 29.58 -169.99 -5.03 17.08 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 27 C -0.07 -0.83 9.69 -39.61 -0.38 -1.21 16 28 C -0.21 -2.17 9.04 -39.43 -0.36 -2.53 16 29 H 0.07 0.37 8.14 -51.92 -0.42 -0.06 16 30 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.40 7.66 -51.93 -0.40 0.01 16 33 H 0.06 0.43 7.67 -51.93 -0.40 0.03 16 34 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 36 H 0.08 0.96 8.04 -51.93 -0.42 0.54 16 37 H 0.08 1.08 8.04 -51.93 -0.42 0.67 16 38 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.40 6.00 6.22 -40.82 -0.25 5.75 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.04 0.71 8.07 -51.93 -0.42 0.29 16 45 H 0.06 1.20 8.04 -51.93 -0.42 0.79 16 46 H 0.03 0.75 7.40 -51.93 -0.38 0.37 16 47 H -0.01 -0.14 5.78 -51.93 -0.30 -0.44 16 48 H 0.04 1.08 7.22 -51.93 -0.37 0.71 16 49 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 50 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 51 H 0.13 1.09 6.30 -52.49 -0.33 0.76 16 LS Contribution 413.17 15.07 6.23 6.23 Total: -1.00 -32.46 413.17 -9.46 -41.92 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -8.70 Total: 3.52 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -1.69 Total: -1.78 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: -0.15 Total: -52.37 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.11 Total: -14.60 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.08 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -32.46 -9.46 -41.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716032499.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.459 kcal (2) G-P(sol) polarization free energy of solvation -32.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds