Wall clock time and date at job start Tue Mar 31 2020 19:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42892 * 109.47154 * 2 1 4 4 C 1.35901 * 117.00124 * 180.02562 * 3 2 1 5 5 C 1.38732 * 120.05860 * 180.02562 * 4 3 2 6 6 C 1.38139 * 119.94201 * 180.02562 * 5 4 3 7 7 C 1.38268 * 120.05890 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.94329 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.46862 * 90.00405 * 8 7 6 10 10 C 1.50706 * 109.46862 * 180.02562 * 9 8 7 11 11 O 1.21278 * 119.99858 * 359.97438 * 10 9 8 12 12 N 1.34769 * 119.99793 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99922 * 179.97438 * 12 10 9 14 14 H 1.08999 * 109.47526 * 325.00343 * 13 12 10 15 15 C 1.53002 * 109.47181 * 84.99851 * 13 12 10 16 16 C 1.53001 * 109.47454 * 204.99824 * 13 12 10 17 17 N 1.46493 * 109.46715 * 54.99927 * 16 13 12 18 18 C 1.46497 * 120.00230 * 269.72475 * 17 16 13 19 19 C 1.36941 * 119.99808 * 90.00651 * 17 16 13 20 20 H 1.07997 * 119.99886 * 339.60626 * 19 17 16 21 21 C 1.38813 * 120.00143 * 159.61975 * 19 17 16 22 22 N 1.31625 * 119.99885 * 344.32664 * 21 19 17 23 23 Si 1.86800 * 120.00180 * 164.33427 * 21 19 17 24 24 H 1.48502 * 109.47252 * 59.99386 * 23 21 19 25 25 H 1.48501 * 109.47064 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.46899 * 299.99366 * 23 21 19 27 27 C 1.38260 * 120.10916 * 0.25498 * 7 6 5 28 28 C 1.38147 * 120.05723 * 359.45205 * 27 7 6 29 29 H 1.09008 * 109.46928 * 59.99922 * 1 2 3 30 30 H 1.08997 * 109.47702 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47585 * 300.00520 * 1 2 3 32 32 H 1.09002 * 109.46869 * 239.99665 * 2 1 3 33 33 H 1.08998 * 109.46857 * 120.00083 * 2 1 3 34 34 H 1.07999 * 120.02857 * 359.97438 * 5 4 3 35 35 H 1.08010 * 119.97185 * 180.02562 * 6 5 4 36 36 H 1.08991 * 109.47280 * 330.00035 * 8 7 6 37 37 H 1.08995 * 109.46757 * 209.99725 * 8 7 6 38 38 H 1.08991 * 109.47475 * 59.99749 * 9 8 7 39 39 H 1.09004 * 109.46989 * 299.99072 * 9 8 7 40 40 H 0.97001 * 120.00568 * 359.97438 * 12 10 9 41 41 H 1.08991 * 109.47504 * 180.02562 * 15 13 12 42 42 H 1.09000 * 109.47344 * 300.00490 * 15 13 12 43 43 H 1.09003 * 109.47131 * 60.00201 * 15 13 12 44 44 H 1.08995 * 109.46932 * 295.00078 * 16 13 12 45 45 H 1.08998 * 109.47144 * 175.00335 * 16 13 12 46 46 H 1.09003 * 109.47207 * 265.09032 * 18 17 16 47 47 H 1.09000 * 109.47374 * 25.08841 * 18 17 16 48 48 H 1.09004 * 109.47233 * 145.09041 * 18 17 16 49 49 H 0.96998 * 119.99639 * 179.97438 * 22 21 19 50 50 H 1.07999 * 119.97004 * 179.70384 * 27 7 6 51 51 H 1.07993 * 120.02798 * 180.25020 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5253 -0.0005 5 6 3.8852 2.8067 0.0000 6 6 5.2550 2.9850 -0.0011 7 6 6.0962 1.8876 -0.0032 8 6 7.5903 2.0851 -0.0050 9 6 8.0977 2.1504 1.4369 10 6 9.5917 2.3485 1.4352 11 8 10.1914 2.4290 0.3841 12 7 10.2611 2.4363 2.6015 13 6 11.7135 2.6283 2.5998 14 1 12.1500 2.0920 1.7572 15 6 12.0306 4.1198 2.4744 16 6 12.3007 2.0901 3.9062 17 7 11.8963 0.6935 4.0844 18 6 10.6594 0.3748 4.8018 19 6 12.6775 -0.3145 3.5855 20 1 13.3893 -0.1077 2.8000 21 6 12.5544 -1.6022 4.0891 22 7 11.9320 -1.8056 5.2309 23 14 13.2722 -3.0464 3.1465 24 1 14.7375 -2.8591 2.9944 25 1 13.0089 -4.3037 3.8915 26 1 12.6413 -3.1243 1.8045 27 6 5.5689 0.6095 -0.0096 28 6 4.1997 0.4258 -0.0024 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.2286 3.6642 0.0004 35 1 5.6694 3.9824 -0.0003 36 1 7.8332 3.0154 -0.5182 37 1 8.0663 1.2508 -0.5202 38 1 7.8548 1.2201 1.9502 39 1 7.6216 2.9847 1.9522 40 1 9.7814 2.3723 3.4422 41 1 13.1111 4.2627 2.4727 42 1 11.6123 4.5032 1.5438 43 1 11.5942 4.6562 3.3171 44 1 11.9322 2.6846 4.7422 45 1 13.3883 2.1516 3.8682 46 1 10.8881 0.1716 5.8480 47 1 9.9739 1.2198 4.7373 48 1 10.1957 -0.5042 4.3539 49 1 11.8456 -2.7054 5.5826 50 1 6.2280 -0.2460 -0.0161 51 1 3.7884 -0.5727 -0.0033 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716032499.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:51 Heat of formation + Delta-G solvation = -60.376819 kcal Electronic energy + Delta-G solvation = -28395.250104 eV Core-core repulsion = 24487.437241 eV Total energy + Delta-G solvation = -3907.812864 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.19421 -40.71721 -38.84142 -38.05844 -35.78309 -34.60488 -33.13195 -32.62216 -31.90472 -31.73643 -29.58766 -28.00326 -27.42044 -25.65234 -24.85206 -23.56014 -22.93578 -22.07190 -21.56240 -21.08453 -19.22553 -18.77975 -18.09952 -17.12575 -17.04052 -16.98099 -16.84405 -16.23832 -16.15251 -15.53964 -15.36873 -15.27735 -14.83394 -14.62441 -14.49307 -14.40993 -14.26761 -13.87928 -13.69274 -13.48711 -13.37768 -13.29786 -13.19077 -12.81469 -12.72581 -12.62224 -12.54577 -12.47788 -12.34439 -12.22571 -12.02458 -12.00809 -11.85972 -11.75380 -11.60533 -11.57164 -10.75571 -10.62186 -9.95059 -9.89463 -9.03529 -8.76036 -7.83186 -5.27482 0.39510 0.43066 1.43085 1.45538 1.51792 1.80510 2.27119 2.40739 2.50300 2.80651 3.28590 3.67654 3.76562 3.82186 3.95074 4.04440 4.08824 4.10114 4.15493 4.23963 4.34466 4.36827 4.42218 4.44930 4.50551 4.53413 4.64071 4.72160 4.77083 4.80415 4.91128 4.93378 4.94858 4.95727 5.01639 5.12440 5.19200 5.20642 5.22304 5.30997 5.34502 5.41613 5.44310 5.61952 5.72860 5.73195 5.77566 5.84348 6.31893 6.46541 6.73695 7.16133 7.43181 7.89082 8.28757 9.18590 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011457 B = 0.002414 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.345843 B =11593.826707 C =13119.101199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.045 3.955 3 O -0.332 6.332 4 C 0.111 3.889 5 C -0.159 4.159 6 C -0.075 4.075 7 C -0.122 4.122 8 C -0.051 4.051 9 C -0.126 4.126 10 C 0.506 3.494 11 O -0.593 6.593 12 N -0.703 5.703 13 C 0.125 3.875 14 H 0.043 0.957 15 C -0.146 4.146 16 C 0.143 3.857 17 N -0.613 5.613 18 C 0.181 3.819 19 C -0.256 4.256 20 H 0.061 0.939 21 C -0.050 4.050 22 N -0.933 5.933 23 Si 0.958 3.042 24 H -0.276 1.276 25 H -0.292 1.292 26 H -0.288 1.288 27 C -0.086 4.086 28 C -0.211 4.211 29 H 0.064 0.936 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.142 0.858 35 H 0.148 0.852 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.096 0.904 39 H 0.118 0.882 40 H 0.405 0.595 41 H 0.072 0.928 42 H 0.044 0.956 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.058 0.942 46 H 0.003 0.997 47 H 0.039 0.961 48 H 0.011 0.989 49 H 0.247 0.753 50 H 0.127 0.873 51 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.521 9.831 -7.784 24.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.030 4.030 3 O -0.247 6.247 4 C 0.066 3.934 5 C -0.177 4.177 6 C -0.093 4.093 7 C -0.122 4.122 8 C -0.089 4.089 9 C -0.165 4.165 10 C 0.294 3.706 11 O -0.474 6.474 12 N -0.354 5.354 13 C 0.017 3.983 14 H 0.061 0.939 15 C -0.204 4.204 16 C 0.016 3.984 17 N -0.335 5.335 18 C 0.036 3.964 19 C -0.387 4.387 20 H 0.079 0.921 21 C -0.245 4.245 22 N -0.580 5.580 23 Si 0.787 3.213 24 H -0.202 1.202 25 H -0.218 1.218 26 H -0.215 1.215 27 C -0.104 4.104 28 C -0.229 4.229 29 H 0.083 0.917 30 H 0.116 0.884 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.160 0.840 35 H 0.166 0.834 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.114 0.886 39 H 0.137 0.863 40 H 0.242 0.758 41 H 0.091 0.909 42 H 0.063 0.937 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.077 0.923 46 H 0.021 0.979 47 H 0.057 0.943 48 H 0.030 0.970 49 H 0.057 0.943 50 H 0.145 0.855 51 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -20.275 9.866 -8.393 24.060 hybrid contribution 0.524 -1.606 -0.019 1.689 sum -19.752 8.259 -8.412 23.002 Atomic orbital electron populations 1.21801 0.91404 1.04108 1.03260 1.23029 0.96957 0.80955 1.02049 1.86040 1.18884 1.31025 1.88726 1.19207 0.82561 0.94632 0.96967 1.20645 0.95540 0.95118 1.06438 1.21085 0.91829 0.99401 0.96965 1.19810 0.95198 0.93474 1.03750 1.20121 0.90388 1.03188 0.95198 1.21652 0.89859 1.05529 0.99486 1.21212 0.91081 0.74948 0.83310 1.90634 1.71394 1.52712 1.32702 1.46045 1.08308 1.72426 1.08635 1.21596 0.80670 0.96107 0.99937 0.93876 1.21997 1.02382 0.94225 1.01835 1.21213 0.98359 0.84470 0.94374 1.44040 1.23035 1.01149 1.65327 1.20573 0.85700 0.95533 0.94557 1.19362 1.17125 0.89113 1.13097 0.92076 1.25565 1.01616 1.00373 0.96991 1.70210 1.48642 1.20344 1.18850 0.85484 0.78496 0.79444 0.77907 1.20223 1.21764 1.21463 1.21058 0.94676 0.97288 0.97384 1.21391 0.94088 0.98761 1.08675 0.91706 0.88404 0.91779 0.91397 0.91491 0.84044 0.83401 0.90483 0.92244 0.88570 0.86343 0.75826 0.90865 0.93652 0.90753 0.91448 0.92345 0.97853 0.94303 0.96969 0.94329 0.85464 0.84223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 10.28 71.98 0.74 -0.67 16 2 C 0.04 0.60 5.46 71.98 0.39 0.99 16 3 O -0.33 -6.55 10.14 -92.43 -0.94 -7.49 16 4 C 0.11 2.33 6.69 22.51 0.15 2.48 16 5 C -0.16 -3.07 9.99 22.36 0.22 -2.85 16 6 C -0.07 -1.41 9.69 22.25 0.22 -1.19 16 7 C -0.12 -2.62 5.13 -19.85 -0.10 -2.72 16 8 C -0.05 -1.22 4.63 29.85 0.14 -1.08 16 9 C -0.13 -2.99 5.68 29.85 0.17 -2.82 16 10 C 0.51 16.48 7.79 87.66 0.68 17.16 16 11 O -0.59 -24.02 15.64 -3.02 -0.05 -24.07 16 12 N -0.70 -22.14 4.53 -442.53 -2.00 -24.14 16 13 C 0.12 4.28 2.88 44.99 0.13 4.41 16 14 H 0.04 1.84 7.58 -2.39 -0.02 1.82 16 15 C -0.15 -3.89 9.48 71.98 0.68 -3.21 16 16 C 0.14 5.31 5.29 86.38 0.46 5.77 16 17 N -0.61 -29.20 2.78 -726.96 -2.02 -31.22 16 18 C 0.18 8.29 8.52 127.77 1.09 9.38 16 19 C -0.26 -14.06 9.67 84.03 0.81 -13.24 16 20 H 0.06 3.36 7.88 -2.91 -0.02 3.34 16 21 C -0.05 -2.83 5.05 84.86 0.43 -2.40 16 22 N -0.93 -54.49 10.69 21.65 0.23 -54.26 16 23 Si 0.96 45.98 29.58 68.60 2.03 48.01 16 24 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 25 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 26 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 27 C -0.09 -1.86 9.69 22.25 0.22 -1.65 16 28 C -0.21 -4.24 9.04 22.37 0.20 -4.04 16 29 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.07 0.81 7.66 -2.39 -0.02 0.79 16 33 H 0.07 0.83 7.67 -2.39 -0.02 0.81 16 34 H 0.14 2.27 8.06 -2.91 -0.02 2.24 16 35 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 36 H 0.08 1.84 8.04 -2.39 -0.02 1.82 16 37 H 0.06 1.65 8.04 -2.39 -0.02 1.63 16 38 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.12 2.14 8.14 -2.38 -0.02 2.12 16 40 H 0.40 11.20 6.22 -92.71 -0.58 10.62 16 41 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.07 1.65 8.14 -2.39 -0.02 1.64 16 44 H 0.07 2.17 8.07 -2.39 -0.02 2.15 16 45 H 0.06 2.21 8.04 -2.39 -0.02 2.19 16 46 H 0.00 0.16 7.40 -2.39 -0.02 0.15 16 47 H 0.04 1.38 5.78 -2.39 -0.01 1.37 16 48 H 0.01 0.60 7.22 -2.38 -0.02 0.58 16 49 H 0.25 14.15 8.31 -92.71 -0.77 13.37 16 50 H 0.13 2.64 8.06 -2.91 -0.02 2.62 16 51 H 0.14 2.28 6.30 -2.91 -0.02 2.26 16 Total: -1.00 -70.88 413.17 4.21 -66.67 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: 0.33 Total: 22.20 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: 6.63 Total: 4.30 kcal Atomic # 7 Polarization: -105.83 SS G_CDS: -3.79 Total: -109.63 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -0.98 Total: -31.56 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -70.88 4.21 -66.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716032499.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.296 kcal (2) G-P(sol) polarization free energy of solvation -70.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds