Wall clock time and date at job start Tue Mar 31 2020 19:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42897 * 109.47295 * 2 1 4 4 C 1.35907 * 116.99891 * 179.97438 * 3 2 1 5 5 C 1.38731 * 120.05340 * 180.02562 * 4 3 2 6 6 C 1.38145 * 119.94230 * 180.02562 * 5 4 3 7 7 C 1.38261 * 120.05777 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.94611 * 179.97438 * 7 6 5 9 9 C 1.53004 * 109.47504 * 89.99957 * 8 7 6 10 10 C 1.50703 * 109.47051 * 179.97438 * 9 8 7 11 11 O 1.21284 * 119.99812 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99656 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99601 * 180.02562 * 12 10 9 14 14 H 1.08997 * 109.47539 * 34.99956 * 13 12 10 15 15 C 1.53003 * 109.47011 * 274.99805 * 13 12 10 16 16 C 1.53005 * 109.47086 * 155.00047 * 13 12 10 17 17 N 1.46496 * 109.46750 * 305.00015 * 16 13 12 18 18 C 1.46496 * 119.99956 * 269.98982 * 17 16 13 19 19 C 1.36942 * 120.00125 * 90.00664 * 17 16 13 20 20 H 1.07998 * 120.00291 * 22.01099 * 19 17 16 21 21 C 1.38816 * 119.99591 * 202.02752 * 19 17 16 22 22 N 1.31614 * 120.00211 * 11.42324 * 21 19 17 23 23 Si 1.86795 * 119.99726 * 191.42678 * 21 19 17 24 24 H 1.48500 * 109.47449 * 89.99661 * 23 21 19 25 25 H 1.48503 * 109.47357 * 209.99622 * 23 21 19 26 26 H 1.48502 * 109.47380 * 329.99508 * 23 21 19 27 27 C 1.38268 * 120.11065 * 0.25082 * 7 6 5 28 28 C 1.38148 * 120.05375 * 359.44939 * 27 7 6 29 29 H 1.09006 * 109.46936 * 59.99990 * 1 2 3 30 30 H 1.08999 * 109.47187 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46889 * 300.00230 * 1 2 3 32 32 H 1.09005 * 109.46970 * 239.99550 * 2 1 3 33 33 H 1.09007 * 109.47167 * 120.00508 * 2 1 3 34 34 H 1.07999 * 120.02712 * 0.02562 * 5 4 3 35 35 H 1.08003 * 119.97130 * 180.02562 * 6 5 4 36 36 H 1.09004 * 109.46937 * 210.00128 * 8 7 6 37 37 H 1.09001 * 109.47036 * 329.99668 * 8 7 6 38 38 H 1.08994 * 109.46422 * 299.99875 * 9 8 7 39 39 H 1.08992 * 109.47095 * 59.99940 * 9 8 7 40 40 H 0.96993 * 119.99738 * 0.02562 * 12 10 9 41 41 H 1.08997 * 109.47092 * 300.00425 * 15 13 12 42 42 H 1.09001 * 109.47046 * 60.00362 * 15 13 12 43 43 H 1.09001 * 109.47284 * 180.02562 * 15 13 12 44 44 H 1.09002 * 109.46432 * 64.99837 * 16 13 12 45 45 H 1.08989 * 109.47228 * 184.99461 * 16 13 12 46 46 H 1.09004 * 109.46653 * 94.04453 * 18 17 16 47 47 H 1.08998 * 109.47757 * 214.04588 * 18 17 16 48 48 H 1.09000 * 109.47313 * 334.05697 * 18 17 16 49 49 H 0.97004 * 120.00225 * 180.02562 * 22 21 19 50 50 H 1.07999 * 119.97371 * 179.70475 * 27 7 6 51 51 H 1.08005 * 120.02950 * 180.24612 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3537 1.5252 0.0005 5 6 3.8852 2.8067 0.0011 6 6 5.2551 2.9850 0.0011 7 6 6.0963 1.8877 0.0000 8 6 7.5902 2.0851 -0.0005 9 6 8.0966 2.1510 1.4418 10 6 9.5908 2.3477 1.4411 11 8 10.1913 2.4279 0.3905 12 7 10.2593 2.4357 2.6080 13 6 11.7117 2.6275 2.6074 14 1 11.9944 3.2597 1.7656 15 6 12.4054 1.2697 2.4810 16 6 12.1382 3.2984 3.9147 17 7 11.3847 4.5419 4.0938 18 6 11.9120 5.8009 3.5617 19 6 10.1877 4.5276 4.7588 20 1 9.9604 3.7246 5.4443 21 6 9.2664 5.5450 4.5515 22 7 9.4368 6.3955 3.5616 23 14 7.7848 5.7070 5.6775 24 1 8.1274 6.5882 6.8227 25 1 6.6506 6.2964 4.9216 26 1 7.3985 4.3654 6.1835 27 6 5.5690 0.6095 -0.0063 28 6 4.1998 0.4258 -0.0001 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.2286 3.6641 0.0015 35 1 5.6694 3.9824 0.0020 36 1 8.0668 1.2506 -0.5152 37 1 7.8336 3.0153 -0.5139 38 1 7.6201 2.9854 1.9562 39 1 7.8533 1.2208 1.9551 40 1 9.7789 2.3720 3.4482 41 1 12.1228 0.6375 3.3227 42 1 12.1017 0.7918 1.5496 43 1 13.4861 1.4123 2.4809 44 1 11.9362 2.6276 4.7498 45 1 13.2043 3.5216 3.8776 46 1 11.4953 5.9791 2.5703 47 1 11.6348 6.6202 4.2250 48 1 12.9982 5.7400 3.4936 49 1 8.7932 7.1068 3.4170 50 1 6.2281 -0.2460 -0.0120 51 1 3.7884 -0.5728 -0.0010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716032500.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:57 Heat of formation + Delta-G solvation = -45.375235 kcal Electronic energy + Delta-G solvation = -28867.969736 eV Core-core repulsion = 24960.807390 eV Total energy + Delta-G solvation = -3907.162346 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.26071 -39.13917 -37.87004 -36.30114 -33.98508 -33.42098 -31.91442 -31.29560 -30.93751 -30.11350 -28.44941 -26.15985 -25.59915 -24.57173 -23.97669 -22.15357 -21.76542 -20.89829 -19.99953 -19.49388 -18.38356 -16.92696 -16.39458 -16.31328 -16.12169 -15.47354 -15.11610 -14.96327 -14.77313 -14.34106 -13.83821 -13.69324 -13.62990 -13.51880 -13.30288 -13.14079 -12.91056 -12.84283 -12.48957 -12.35009 -12.16361 -11.94719 -11.79277 -11.59612 -11.38543 -11.29601 -11.15649 -10.94876 -10.86635 -10.79772 -10.69048 -10.58469 -10.37818 -10.22278 -10.04387 -9.82955 -9.11079 -9.01130 -8.57633 -8.18053 -8.07470 -6.78420 -5.74313 -3.20412 1.33048 1.40199 3.02739 3.33473 3.40078 3.41022 3.42879 3.70688 4.05425 4.45506 4.60000 4.60576 4.79371 4.84586 4.92861 4.98785 5.16390 5.30298 5.35120 5.37402 5.41740 5.44878 5.49737 5.54558 5.60985 5.68083 5.69931 5.75611 5.88406 5.96684 6.00876 6.04682 6.19273 6.22490 6.26257 6.28336 6.35108 6.42240 6.48092 6.55824 6.74173 6.76432 6.77649 6.92532 7.32392 7.37455 7.39925 7.70097 7.79958 8.35476 8.40224 9.04957 9.20169 9.84165 10.34272 11.29721 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011918 B = 0.002848 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.902089 B = 9827.375865 C =11361.232499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.319 6.319 4 C 0.119 3.881 5 C -0.149 4.149 6 C -0.073 4.073 7 C -0.111 4.111 8 C -0.058 4.058 9 C -0.134 4.134 10 C 0.517 3.483 11 O -0.566 6.566 12 N -0.689 5.689 13 C 0.118 3.882 14 H 0.075 0.925 15 C -0.159 4.159 16 C 0.142 3.858 17 N -0.598 5.598 18 C 0.165 3.835 19 C -0.255 4.255 20 H 0.066 0.934 21 C 0.007 3.993 22 N -0.899 5.899 23 Si 0.896 3.104 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.280 1.280 27 C -0.078 4.078 28 C -0.208 4.208 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.129 0.871 35 H 0.132 0.868 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.403 0.597 41 H 0.050 0.950 42 H 0.051 0.949 43 H 0.057 0.943 44 H 0.047 0.953 45 H 0.051 0.949 46 H 0.027 0.973 47 H 0.045 0.955 48 H -0.005 1.005 49 H 0.252 0.748 50 H 0.124 0.876 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.324 -13.576 -5.884 18.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.233 6.233 4 C 0.074 3.926 5 C -0.167 4.167 6 C -0.091 4.091 7 C -0.111 4.111 8 C -0.096 4.096 9 C -0.174 4.174 10 C 0.303 3.697 11 O -0.446 6.446 12 N -0.338 5.338 13 C 0.010 3.990 14 H 0.093 0.907 15 C -0.218 4.218 16 C 0.014 3.986 17 N -0.321 5.321 18 C 0.020 3.980 19 C -0.385 4.385 20 H 0.084 0.916 21 C -0.192 4.192 22 N -0.543 5.543 23 Si 0.727 3.273 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.205 1.205 27 C -0.096 4.096 28 C -0.227 4.227 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.115 0.885 39 H 0.102 0.898 40 H 0.239 0.761 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.069 0.931 46 H 0.045 0.955 47 H 0.063 0.937 48 H 0.013 0.987 49 H 0.062 0.938 50 H 0.142 0.858 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.145 -13.197 -6.641 17.922 hybrid contribution -1.128 -0.020 1.008 1.513 sum -11.273 -13.217 -5.633 18.262 Atomic orbital electron populations 1.21774 0.92866 1.02751 1.03527 1.22745 0.95756 0.82241 1.01317 1.86057 1.19326 1.29028 1.88925 1.18971 0.82009 0.94247 0.97372 1.20434 0.95263 0.94724 1.06328 1.20996 0.91961 0.99263 0.96917 1.19919 0.96100 0.92904 1.02187 1.20247 0.89444 1.03920 0.95956 1.21611 0.93393 1.04067 0.98368 1.20406 0.89321 0.75944 0.83981 1.90611 1.70304 1.52096 1.31624 1.45730 1.08199 1.71480 1.08372 1.21778 0.80148 0.95023 1.02061 0.90687 1.22153 1.00129 0.98233 1.01270 1.21178 0.95006 0.88916 0.93530 1.43884 1.21603 1.01408 1.65164 1.20788 0.90806 0.87702 0.98699 1.19076 0.92797 1.09360 1.17276 0.91613 1.24985 0.97633 0.99422 0.97183 1.70076 1.36543 1.18571 1.29159 0.86394 0.82716 0.77917 0.80322 1.21575 1.21725 1.20496 1.20850 0.94080 0.96872 0.97799 1.21168 0.94350 0.97742 1.09427 0.91566 0.90460 0.91500 0.92172 0.92103 0.85346 0.84989 0.90670 0.90217 0.88526 0.89752 0.76125 0.93123 0.93017 0.92410 0.93437 0.93117 0.95451 0.93670 0.98668 0.93766 0.85817 0.85820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.28 37.16 0.38 -0.58 16 2 C 0.05 0.45 5.46 37.16 0.20 0.65 16 3 O -0.32 -3.78 10.14 -19.45 -0.20 -3.98 16 4 C 0.12 1.51 6.69 -39.22 -0.26 1.24 16 5 C -0.15 -1.95 9.99 -39.43 -0.39 -2.34 16 6 C -0.07 -0.99 9.69 -39.61 -0.38 -1.38 16 7 C -0.11 -1.49 5.13 -104.60 -0.54 -2.03 16 8 C -0.06 -0.85 4.63 -27.88 -0.13 -0.98 16 9 C -0.13 -2.13 5.68 -27.88 -0.16 -2.29 16 10 C 0.52 10.01 7.79 -10.98 -0.09 9.93 16 11 O -0.57 -12.57 15.64 5.55 0.09 -12.49 16 12 N -0.69 -13.13 4.49 -53.80 -0.24 -13.37 16 13 C 0.12 2.21 2.88 -67.93 -0.20 2.02 16 14 H 0.07 1.64 7.58 -51.93 -0.39 1.25 16 15 C -0.16 -2.42 9.48 37.16 0.35 -2.07 16 16 C 0.14 2.73 5.36 -4.04 -0.02 2.71 16 17 N -0.60 -14.16 2.82 -181.12 -0.51 -14.67 16 18 C 0.16 4.02 9.01 59.84 0.54 4.56 16 19 C -0.26 -6.42 8.02 -15.06 -0.12 -6.54 16 20 H 0.07 1.60 7.84 -52.49 -0.41 1.19 16 21 C 0.01 0.18 5.13 -17.43 -0.09 0.09 16 22 N -0.90 -25.19 10.57 55.49 0.59 -24.61 16 23 Si 0.90 20.86 29.57 -169.99 -5.03 15.83 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 C -0.08 -0.94 9.69 -39.60 -0.38 -1.32 16 28 C -0.21 -2.39 9.04 -39.43 -0.36 -2.75 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.43 7.66 -51.93 -0.40 0.04 16 33 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 34 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 35 H 0.13 1.72 8.06 -52.48 -0.42 1.30 16 36 H 0.07 1.08 8.04 -51.93 -0.42 0.66 16 37 H 0.08 1.28 8.04 -51.93 -0.42 0.87 16 38 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 39 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.40 7.57 7.40 -40.82 -0.30 7.27 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.05 0.86 8.03 -51.93 -0.42 0.45 16 45 H 0.05 0.90 7.86 -51.93 -0.41 0.49 16 46 H 0.03 0.74 7.44 -51.93 -0.39 0.35 16 47 H 0.04 1.18 7.16 -51.93 -0.37 0.81 16 48 H -0.01 -0.11 7.85 -51.93 -0.41 -0.52 16 49 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 50 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 51 H 0.12 1.13 6.30 -52.48 -0.33 0.80 16 LS Contribution 415.00 15.07 6.25 6.25 Total: -1.00 -30.95 415.00 -9.53 -40.48 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -8.84 Total: 7.63 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -1.64 Total: -1.08 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: -0.17 Total: -52.65 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.11 Total: -16.47 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -30.95 -9.53 -40.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716032500.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.891 kcal (2) G-P(sol) polarization free energy of solvation -30.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds