Wall clock time and date at job start Tue Mar 31 2020 19:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42897 * 109.47295 * 2 1 4 4 C 1.35907 * 116.99891 * 179.97438 * 3 2 1 5 5 C 1.38731 * 120.05340 * 180.02562 * 4 3 2 6 6 C 1.38145 * 119.94230 * 180.02562 * 5 4 3 7 7 C 1.38261 * 120.05777 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.94611 * 179.97438 * 7 6 5 9 9 C 1.53004 * 109.47504 * 89.99957 * 8 7 6 10 10 C 1.50703 * 109.47051 * 179.97438 * 9 8 7 11 11 O 1.21284 * 119.99812 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99656 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99601 * 180.02562 * 12 10 9 14 14 H 1.08997 * 109.47539 * 34.99956 * 13 12 10 15 15 C 1.53003 * 109.47011 * 274.99805 * 13 12 10 16 16 C 1.53005 * 109.47086 * 155.00047 * 13 12 10 17 17 N 1.46496 * 109.46750 * 305.00015 * 16 13 12 18 18 C 1.46496 * 119.99956 * 269.98982 * 17 16 13 19 19 C 1.36942 * 120.00125 * 90.00664 * 17 16 13 20 20 H 1.07998 * 120.00291 * 22.01099 * 19 17 16 21 21 C 1.38816 * 119.99591 * 202.02752 * 19 17 16 22 22 N 1.31614 * 120.00211 * 11.42324 * 21 19 17 23 23 Si 1.86795 * 119.99726 * 191.42678 * 21 19 17 24 24 H 1.48500 * 109.47449 * 89.99661 * 23 21 19 25 25 H 1.48503 * 109.47357 * 209.99622 * 23 21 19 26 26 H 1.48502 * 109.47380 * 329.99508 * 23 21 19 27 27 C 1.38268 * 120.11065 * 0.25082 * 7 6 5 28 28 C 1.38148 * 120.05375 * 359.44939 * 27 7 6 29 29 H 1.09006 * 109.46936 * 59.99990 * 1 2 3 30 30 H 1.08999 * 109.47187 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46889 * 300.00230 * 1 2 3 32 32 H 1.09005 * 109.46970 * 239.99550 * 2 1 3 33 33 H 1.09007 * 109.47167 * 120.00508 * 2 1 3 34 34 H 1.07999 * 120.02712 * 0.02562 * 5 4 3 35 35 H 1.08003 * 119.97130 * 180.02562 * 6 5 4 36 36 H 1.09004 * 109.46937 * 210.00128 * 8 7 6 37 37 H 1.09001 * 109.47036 * 329.99668 * 8 7 6 38 38 H 1.08994 * 109.46422 * 299.99875 * 9 8 7 39 39 H 1.08992 * 109.47095 * 59.99940 * 9 8 7 40 40 H 0.96993 * 119.99738 * 0.02562 * 12 10 9 41 41 H 1.08997 * 109.47092 * 300.00425 * 15 13 12 42 42 H 1.09001 * 109.47046 * 60.00362 * 15 13 12 43 43 H 1.09001 * 109.47284 * 180.02562 * 15 13 12 44 44 H 1.09002 * 109.46432 * 64.99837 * 16 13 12 45 45 H 1.08989 * 109.47228 * 184.99461 * 16 13 12 46 46 H 1.09004 * 109.46653 * 94.04453 * 18 17 16 47 47 H 1.08998 * 109.47757 * 214.04588 * 18 17 16 48 48 H 1.09000 * 109.47313 * 334.05697 * 18 17 16 49 49 H 0.97004 * 120.00225 * 180.02562 * 22 21 19 50 50 H 1.07999 * 119.97371 * 179.70475 * 27 7 6 51 51 H 1.08005 * 120.02950 * 180.24612 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3537 1.5252 0.0005 5 6 3.8852 2.8067 0.0011 6 6 5.2551 2.9850 0.0011 7 6 6.0963 1.8877 0.0000 8 6 7.5902 2.0851 -0.0005 9 6 8.0966 2.1510 1.4418 10 6 9.5908 2.3477 1.4411 11 8 10.1913 2.4279 0.3905 12 7 10.2593 2.4357 2.6080 13 6 11.7117 2.6275 2.6074 14 1 11.9944 3.2597 1.7656 15 6 12.4054 1.2697 2.4810 16 6 12.1382 3.2984 3.9147 17 7 11.3847 4.5419 4.0938 18 6 11.9120 5.8009 3.5617 19 6 10.1877 4.5276 4.7588 20 1 9.9604 3.7246 5.4443 21 6 9.2664 5.5450 4.5515 22 7 9.4368 6.3955 3.5616 23 14 7.7848 5.7070 5.6775 24 1 8.1274 6.5882 6.8227 25 1 6.6506 6.2964 4.9216 26 1 7.3985 4.3654 6.1835 27 6 5.5690 0.6095 -0.0063 28 6 4.1998 0.4258 -0.0001 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.2286 3.6641 0.0015 35 1 5.6694 3.9824 0.0020 36 1 8.0668 1.2506 -0.5152 37 1 7.8336 3.0153 -0.5139 38 1 7.6201 2.9854 1.9562 39 1 7.8533 1.2208 1.9551 40 1 9.7789 2.3720 3.4482 41 1 12.1228 0.6375 3.3227 42 1 12.1017 0.7918 1.5496 43 1 13.4861 1.4123 2.4809 44 1 11.9362 2.6276 4.7498 45 1 13.2043 3.5216 3.8776 46 1 11.4953 5.9791 2.5703 47 1 11.6348 6.6202 4.2250 48 1 12.9982 5.7400 3.4936 49 1 8.7932 7.1068 3.4170 50 1 6.2281 -0.2460 -0.0120 51 1 3.7884 -0.5728 -0.0010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716032500.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:55 Heat of formation + Delta-G solvation = -62.145724 kcal Electronic energy + Delta-G solvation = -28868.696959 eV Core-core repulsion = 24960.807390 eV Total energy + Delta-G solvation = -3907.889569 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.19572 -40.62327 -38.84291 -37.98670 -35.68549 -34.59032 -33.16155 -32.60723 -31.87379 -31.61023 -29.56047 -28.02384 -27.34243 -25.63694 -24.84273 -23.53943 -22.96293 -22.07581 -21.41858 -21.02793 -19.23759 -18.74472 -17.94614 -17.12371 -17.05117 -17.01523 -16.70904 -16.24793 -16.10011 -15.58778 -15.31016 -15.03994 -14.98956 -14.49425 -14.45254 -14.41499 -14.25786 -13.94573 -13.77328 -13.45498 -13.32646 -13.21126 -13.07155 -12.85757 -12.70999 -12.63239 -12.54861 -12.48302 -12.28140 -12.13343 -12.03762 -11.92763 -11.91777 -11.64793 -11.61709 -11.56457 -10.67262 -10.57837 -9.97498 -9.74124 -9.04982 -8.74359 -7.75072 -5.22113 0.36830 0.41428 1.48258 1.51177 1.57789 1.87214 2.26143 2.51608 2.56009 2.80400 3.40496 3.71961 3.80365 3.83254 3.94007 4.05874 4.07087 4.14100 4.19675 4.24297 4.34648 4.38502 4.43182 4.45625 4.50758 4.58999 4.63356 4.72208 4.78316 4.86979 4.89705 4.93634 4.93702 4.95099 5.03838 5.12006 5.17376 5.21111 5.22722 5.32020 5.35371 5.38523 5.43863 5.68290 5.71652 5.75663 5.81583 5.87001 6.37283 6.46850 6.86230 7.19875 7.52429 7.92319 8.38656 9.28511 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011918 B = 0.002848 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.902089 B = 9827.375865 C =11361.232499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.044 3.956 3 O -0.335 6.335 4 C 0.114 3.886 5 C -0.164 4.164 6 C -0.087 4.087 7 C -0.123 4.123 8 C -0.048 4.048 9 C -0.125 4.125 10 C 0.509 3.491 11 O -0.600 6.600 12 N -0.689 5.689 13 C 0.120 3.880 14 H 0.036 0.964 15 C -0.145 4.145 16 C 0.141 3.859 17 N -0.612 5.612 18 C 0.180 3.820 19 C -0.244 4.244 20 H 0.081 0.919 21 C -0.046 4.046 22 N -0.935 5.935 23 Si 0.952 3.048 24 H -0.294 1.294 25 H -0.305 1.305 26 H -0.259 1.259 27 C -0.075 4.075 28 C -0.204 4.204 29 H 0.062 0.938 30 H 0.101 0.899 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.132 0.868 35 H 0.124 0.876 36 H 0.080 0.920 37 H 0.054 0.946 38 H 0.082 0.918 39 H 0.115 0.885 40 H 0.406 0.594 41 H 0.071 0.929 42 H 0.039 0.961 43 H 0.078 0.922 44 H 0.068 0.932 45 H 0.071 0.929 46 H -0.009 1.009 47 H 0.019 0.981 48 H 0.025 0.975 49 H 0.242 0.758 50 H 0.147 0.853 51 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.826 -16.862 -4.654 20.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.031 4.031 3 O -0.250 6.250 4 C 0.069 3.931 5 C -0.183 4.183 6 C -0.105 4.105 7 C -0.123 4.123 8 C -0.085 4.085 9 C -0.165 4.165 10 C 0.297 3.703 11 O -0.483 6.483 12 N -0.338 5.338 13 C 0.012 3.988 14 H 0.055 0.945 15 C -0.204 4.204 16 C 0.015 3.985 17 N -0.334 5.334 18 C 0.034 3.966 19 C -0.374 4.374 20 H 0.099 0.901 21 C -0.242 4.242 22 N -0.582 5.582 23 Si 0.782 3.218 24 H -0.222 1.222 25 H -0.233 1.233 26 H -0.183 1.183 27 C -0.093 4.093 28 C -0.223 4.223 29 H 0.081 0.919 30 H 0.120 0.880 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.150 0.850 35 H 0.142 0.858 36 H 0.098 0.902 37 H 0.073 0.927 38 H 0.101 0.899 39 H 0.133 0.867 40 H 0.242 0.758 41 H 0.090 0.910 42 H 0.059 0.941 43 H 0.097 0.903 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.009 0.991 47 H 0.038 0.962 48 H 0.044 0.956 49 H 0.051 0.949 50 H 0.165 0.835 51 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -10.635 -16.533 -5.379 20.381 hybrid contribution -0.945 0.952 0.621 1.478 sum -11.581 -15.581 -4.758 19.988 Atomic orbital electron populations 1.21811 0.91601 1.04200 1.03064 1.23079 0.96842 0.80761 1.02377 1.86054 1.18777 1.31444 1.88715 1.19120 0.82773 0.94349 0.96894 1.20540 0.95113 0.95615 1.06997 1.21017 0.92491 0.99228 0.97779 1.19822 0.95005 0.93757 1.03703 1.20094 0.90621 1.02848 0.94977 1.21588 0.90620 1.04891 0.99368 1.21007 0.90675 0.75167 0.83482 1.90590 1.71316 1.53648 1.32741 1.45811 1.08531 1.71039 1.08425 1.21674 0.80405 0.96550 1.00124 0.94523 1.22012 1.00953 0.95872 1.01543 1.21379 0.95574 0.87351 0.94232 1.44119 1.21635 1.02692 1.64961 1.20480 0.92272 0.87727 0.96079 1.19432 0.92699 1.08770 1.16485 0.90137 1.25628 1.00236 0.99835 0.98475 1.70265 1.37339 1.19415 1.31220 0.85482 0.79657 0.78396 0.78249 1.22199 1.23271 1.18323 1.21093 0.94767 0.96720 0.96686 1.21455 0.93939 0.98703 1.08155 0.91922 0.88029 0.92090 0.90908 0.91101 0.85049 0.85804 0.90152 0.92695 0.89947 0.86677 0.75833 0.91008 0.94134 0.90325 0.91336 0.91090 0.99074 0.96208 0.95614 0.94899 0.83543 0.83009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 10.28 71.98 0.74 -0.84 16 2 C 0.04 0.62 5.46 71.98 0.39 1.01 16 3 O -0.34 -7.51 10.14 -92.51 -0.94 -8.45 16 4 C 0.11 2.75 6.69 22.50 0.15 2.91 16 5 C -0.16 -4.33 9.99 22.37 0.22 -4.11 16 6 C -0.09 -2.43 9.69 22.25 0.22 -2.21 16 7 C -0.12 -3.26 5.13 -19.85 -0.10 -3.36 16 8 C -0.05 -1.41 4.63 29.85 0.14 -1.28 16 9 C -0.12 -3.93 5.68 29.85 0.17 -3.76 16 10 C 0.51 19.79 7.79 87.66 0.68 20.47 16 11 O -0.60 -27.28 15.64 -3.04 -0.05 -27.33 16 12 N -0.69 -25.76 4.49 -442.52 -1.99 -27.74 16 13 C 0.12 4.37 2.88 44.99 0.13 4.50 16 14 H 0.04 1.62 7.58 -2.39 -0.02 1.60 16 15 C -0.14 -4.04 9.48 71.98 0.68 -3.36 16 16 C 0.14 5.11 5.36 86.38 0.46 5.57 16 17 N -0.61 -28.45 2.82 -726.95 -2.05 -30.50 16 18 C 0.18 8.87 9.01 127.77 1.15 10.02 16 19 C -0.24 -12.00 8.02 84.03 0.67 -11.32 16 20 H 0.08 3.70 7.84 -2.91 -0.02 3.68 16 21 C -0.05 -2.46 5.13 84.86 0.44 -2.02 16 22 N -0.94 -54.18 10.57 21.65 0.23 -53.95 16 23 Si 0.95 43.06 29.57 68.60 2.03 45.08 16 24 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 25 H -0.31 -14.43 7.11 99.48 0.71 -13.72 16 26 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 27 C -0.07 -1.64 9.69 22.26 0.22 -1.42 16 28 C -0.20 -4.20 9.04 22.37 0.20 -4.00 16 29 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.70 16 32 H 0.07 0.84 7.66 -2.38 -0.02 0.82 16 33 H 0.07 0.86 7.66 -2.38 -0.02 0.84 16 34 H 0.13 3.23 8.06 -2.91 -0.02 3.21 16 35 H 0.12 3.51 8.06 -2.91 -0.02 3.49 16 36 H 0.08 2.27 8.04 -2.38 -0.02 2.26 16 37 H 0.05 1.87 8.04 -2.39 -0.02 1.85 16 38 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 39 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 40 H 0.41 14.61 7.40 -92.71 -0.69 13.92 16 41 H 0.07 1.71 8.14 -2.39 -0.02 1.70 16 42 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.07 2.23 8.03 -2.39 -0.02 2.21 16 45 H 0.07 2.30 7.86 -2.39 -0.02 2.28 16 46 H -0.01 -0.51 7.44 -2.38 -0.02 -0.53 16 47 H 0.02 1.04 7.16 -2.39 -0.02 1.02 16 48 H 0.03 1.08 7.85 -2.39 -0.02 1.06 16 49 H 0.24 13.96 8.31 -92.71 -0.77 13.19 16 50 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16 51 H 0.15 2.20 6.30 -2.91 -0.02 2.18 16 Total: -1.00 -68.66 415.00 4.02 -64.64 By element: Atomic # 1 Polarization: 31.22 SS G_CDS: 0.21 Total: 31.43 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: 6.57 Total: 6.80 kcal Atomic # 7 Polarization: -108.38 SS G_CDS: -3.81 Total: -112.19 kcal Atomic # 8 Polarization: -34.79 SS G_CDS: -0.99 Total: -35.78 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Total: -68.66 4.02 -64.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716032500.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.498 kcal (2) G-P(sol) polarization free energy of solvation -68.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds