Wall clock time and date at job start Tue Mar 31 2020 18:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47296 * 2 1 4 4 C 1.46500 * 119.99679 * 90.00379 * 3 2 1 5 5 C 1.52997 * 109.47473 * 90.00212 * 4 3 2 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 3 7 7 C 1.36936 * 119.99992 * 179.97438 * 6 5 4 8 8 H 1.08006 * 119.99834 * 0.02562 * 7 6 5 9 9 C 1.38801 * 120.00093 * 180.02562 * 7 6 5 10 10 N 1.31619 * 120.00176 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00265 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46951 * 89.99797 * 11 9 7 13 13 H 1.48500 * 109.47313 * 210.00112 * 11 9 7 14 14 H 1.48501 * 109.46991 * 330.00153 * 11 9 7 15 15 C 1.34774 * 120.00048 * 270.00344 * 3 2 1 16 16 O 1.21286 * 119.99764 * 179.97438 * 15 3 2 17 17 C 1.50697 * 120.00258 * 0.02562 * 15 3 2 18 18 C 1.53002 * 109.47440 * 180.02562 * 17 15 3 19 19 C 1.50689 * 109.47440 * 179.97438 * 18 17 15 20 20 C 1.34519 * 125.78925 * 89.99343 * 19 18 17 21 21 C 1.41385 * 106.83978 * 180.02562 * 20 19 18 22 22 C 1.34513 * 106.84129 * 0.02562 * 21 20 19 23 23 C 1.50702 * 125.78823 * 180.02562 * 22 21 20 24 24 H 1.08991 * 115.54976 * 334.41537 * 23 22 21 25 25 C 1.53002 * 117.49741 * 188.74113 * 23 22 21 26 26 C 1.53004 * 117.49851 * 120.08654 * 23 22 21 27 27 H 1.09002 * 117.49742 * 214.98047 * 26 23 22 28 28 C 1.53006 * 117.49988 * 359.97438 * 26 23 22 29 29 O 1.34302 * 125.79082 * 269.69224 * 19 18 17 30 30 H 1.09000 * 109.46810 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47084 * 299.99552 * 1 2 3 32 32 H 1.08999 * 109.47010 * 59.99976 * 1 2 3 33 33 H 1.09001 * 109.47084 * 240.00448 * 2 1 3 34 34 H 1.08998 * 109.47584 * 120.00522 * 2 1 3 35 35 H 1.09002 * 109.47129 * 329.99954 * 4 3 2 36 36 H 1.08998 * 109.46845 * 210.00761 * 4 3 2 37 37 H 1.09002 * 109.47153 * 59.99757 * 5 4 3 38 38 H 1.09001 * 109.46832 * 299.99948 * 5 4 3 39 39 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 40 40 H 0.97001 * 120.00803 * 179.97438 * 10 9 7 41 41 H 1.09002 * 109.46816 * 299.99717 * 17 15 3 42 42 H 1.08991 * 109.47311 * 59.99425 * 17 15 3 43 43 H 1.09000 * 109.46639 * 300.00125 * 18 17 15 44 44 H 1.08998 * 109.47182 * 59.99154 * 18 17 15 45 45 H 1.07998 * 126.58167 * 0.04233 * 20 19 18 46 46 H 1.08003 * 126.58051 * 180.02562 * 21 20 19 47 47 H 1.09000 * 117.49766 * 0.02562 * 25 23 22 48 48 H 1.09003 * 117.49700 * 144.99811 * 25 23 22 49 49 H 1.08999 * 109.46785 * 59.99660 * 28 26 23 50 50 H 1.08999 * 109.47262 * 180.02562 * 28 26 23 51 51 H 1.09001 * 109.46858 * 300.00629 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 1.2688 5 6 3.7076 1.8313 1.7104 6 7 3.9520 2.5224 2.9789 7 6 5.1841 2.4495 3.5720 8 1 5.9758 1.8829 3.1044 9 6 5.4154 3.1038 4.7741 10 7 4.4505 3.7938 5.3442 11 14 7.0964 3.0050 5.5829 12 1 7.9458 4.1220 5.0971 13 1 6.9433 3.1041 7.0566 14 1 7.7364 1.7101 5.2377 15 6 2.2429 2.0166 -1.1672 16 8 2.6468 3.1602 -1.1671 17 6 1.9912 1.3065 -2.4723 18 6 2.3233 2.2436 -3.6352 19 6 2.0721 1.5334 -4.9403 20 6 0.9123 1.5267 -5.6218 21 6 1.1221 0.7427 -6.7795 22 6 2.3972 0.3167 -6.7359 23 6 3.0715 -0.5530 -7.7655 24 1 2.4084 -1.1936 -8.3467 25 6 4.4628 -1.0946 -7.4309 26 6 4.3035 0.0154 -8.4728 27 1 4.4510 -0.2518 -9.5192 28 6 4.7563 1.4234 -8.0811 29 8 2.9698 0.8043 -5.6232 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.5818 1.6876 2.0284 36 1 2.0955 3.1409 1.1385 37 1 4.3884 2.2155 0.9507 38 1 3.8746 0.7621 1.8407 39 1 3.2408 3.0309 3.3989 40 1 4.6120 4.2508 6.1844 41 1 2.6210 0.4188 -2.5303 42 1 0.9432 1.0127 -2.5298 43 1 1.6938 3.1316 -3.5773 44 1 3.3714 2.5371 -3.5775 45 1 -0.0032 2.0248 -5.3390 46 1 0.3975 0.5271 -7.5508 47 1 4.8902 -0.8222 -6.4659 48 1 4.7149 -2.0917 -7.7919 49 1 4.9987 1.4446 -7.0186 50 1 5.6381 1.6960 -8.6609 51 1 3.9542 2.1328 -8.2849 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716228352.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:51 Heat of formation + Delta-G solvation = 3.941926 kcal Electronic energy + Delta-G solvation = -28203.685392 eV Core-core repulsion = 24298.661598 eV Total energy + Delta-G solvation = -3905.023794 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.86547 -39.93294 -38.14577 -36.28311 -34.66906 -34.09666 -33.02959 -31.73372 -30.29707 -29.69634 -28.68074 -27.49492 -25.19671 -23.68584 -23.24474 -22.32109 -22.13519 -21.39372 -20.87581 -19.96223 -18.85921 -17.44053 -17.08205 -16.65692 -16.30189 -16.20641 -15.73403 -15.53225 -14.69046 -14.66810 -14.14253 -13.94227 -13.63241 -13.55850 -13.47231 -13.39534 -13.13597 -13.01797 -12.92299 -12.82349 -12.63547 -12.49183 -12.22184 -12.15011 -11.87557 -11.82141 -11.40664 -11.25178 -11.07340 -10.97682 -10.94402 -10.86635 -10.64430 -10.44901 -10.09553 -10.03138 -9.77771 -9.62300 -8.84910 -8.51339 -8.38931 -6.90680 -5.73804 -3.02950 1.42405 2.33678 2.59031 2.73575 3.10460 3.42563 3.46275 3.51076 3.52697 4.06291 4.25960 4.34379 4.47759 4.63298 4.69632 4.76046 4.78928 4.86024 4.88266 4.91762 4.99897 5.10971 5.25962 5.27882 5.32381 5.37718 5.44210 5.49228 5.54045 5.54648 5.63326 5.65487 5.66419 5.68103 5.69176 5.75370 5.83596 5.86392 5.90597 6.01485 6.05146 6.08333 6.17392 6.32571 6.58978 6.76972 6.94126 6.99574 7.52419 7.72514 8.29569 8.44794 9.55568 10.12002 10.47130 11.49099 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014471 B = 0.002039 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.378020 B =13731.239339 C =14817.899222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.102 3.898 3 N -0.607 5.607 4 C 0.108 3.892 5 C 0.143 3.857 6 N -0.730 5.730 7 C -0.237 4.237 8 H 0.070 0.930 9 C -0.015 4.015 10 N -0.934 5.934 11 Si 0.909 3.091 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.282 1.282 15 C 0.512 3.488 16 O -0.534 6.534 17 C -0.135 4.135 18 C -0.025 4.025 19 C -0.005 4.005 20 C -0.207 4.207 21 C -0.205 4.205 22 C 0.020 3.980 23 C -0.083 4.083 24 H 0.132 0.868 25 C -0.167 4.167 26 C -0.139 4.139 27 H 0.112 0.888 28 C -0.126 4.126 29 O -0.169 6.169 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.022 0.978 38 H 0.017 0.983 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.090 0.910 45 H 0.147 0.853 46 H 0.145 0.855 47 H 0.102 0.898 48 H 0.102 0.898 49 H 0.062 0.938 50 H 0.062 0.938 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.531 -11.838 -28.491 32.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.022 4.022 3 N -0.340 5.340 4 C -0.015 4.015 5 C 0.015 3.985 6 N -0.375 5.375 7 C -0.368 4.368 8 H 0.088 0.912 9 C -0.211 4.211 10 N -0.582 5.582 11 Si 0.740 3.260 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.208 1.208 15 C 0.299 3.701 16 O -0.410 6.410 17 C -0.175 4.175 18 C -0.063 4.063 19 C -0.055 4.055 20 C -0.226 4.226 21 C -0.224 4.224 22 C -0.030 4.030 23 C -0.101 4.101 24 H 0.150 0.850 25 C -0.204 4.204 26 C -0.157 4.157 27 H 0.130 0.870 28 C -0.183 4.183 29 O -0.066 6.066 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.040 0.960 38 H 0.035 0.965 39 H 0.217 0.783 40 H 0.065 0.935 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.121 0.879 44 H 0.108 0.892 45 H 0.165 0.835 46 H 0.163 0.837 47 H 0.121 0.879 48 H 0.120 0.880 49 H 0.081 0.919 50 H 0.081 0.919 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.844 -11.317 -28.348 31.779 hybrid contribution 0.325 -0.023 0.603 0.686 sum -8.519 -11.340 -27.744 31.160 Atomic orbital electron populations 1.22218 0.95908 1.02214 1.02616 1.21601 0.94346 0.82645 1.03563 1.47950 1.65523 1.14227 1.06303 1.21693 0.98079 0.98410 0.83294 1.20905 0.92811 0.95446 0.89384 1.42211 1.12875 1.60763 1.21656 1.19204 0.89294 1.26032 1.02305 0.91224 1.24751 0.97856 1.00393 0.98071 1.69660 1.31534 1.37453 1.19578 0.86160 0.83688 0.77628 0.78537 1.21669 1.21747 1.20783 1.20494 0.77556 0.86771 0.85252 1.90747 1.45113 1.17858 1.87279 1.21711 1.04152 0.99827 0.91827 1.19872 1.05089 0.96375 0.84946 1.22422 0.88256 0.98439 0.96396 1.21563 0.99109 1.05360 0.96618 1.21443 0.96394 1.03696 1.00849 1.21227 0.92459 1.00954 0.88372 1.20604 0.90829 1.00850 0.97835 0.84979 1.23219 0.97556 0.98746 1.00853 1.22525 0.99603 0.95673 0.97930 0.86989 1.21389 1.01083 0.93876 1.01960 1.83947 1.39693 1.52994 1.30003 0.91512 0.91949 0.92586 0.90498 0.89743 0.90573 0.89718 0.95961 0.96508 0.78275 0.93504 0.88648 0.88555 0.87937 0.89156 0.83484 0.83707 0.87947 0.87980 0.91928 0.91896 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.44 10.24 37.16 0.38 -1.06 16 2 C 0.10 1.02 5.93 -4.04 -0.02 1.00 16 3 N -0.61 -8.44 2.47 -173.69 -0.43 -8.87 16 4 C 0.11 1.87 5.52 -4.04 -0.02 1.84 16 5 C 0.14 3.07 6.58 -4.04 -0.03 3.05 16 6 N -0.73 -19.35 5.60 -59.91 -0.34 -19.68 16 7 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 8 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 9 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16 10 N -0.93 -28.84 13.06 55.49 0.72 -28.12 16 11 Si 0.91 22.96 29.55 -169.99 -5.02 17.93 16 12 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 13 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 14 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 15 C 0.51 7.40 7.67 -10.99 -0.08 7.31 16 16 O -0.53 -10.01 15.56 5.55 0.09 -9.92 16 17 C -0.14 -1.38 4.23 -27.88 -0.12 -1.50 16 18 C -0.03 -0.27 5.04 -27.89 -0.14 -0.41 16 19 C -0.01 -0.05 6.57 -35.63 -0.23 -0.29 16 20 C -0.21 -2.00 10.81 -39.70 -0.43 -2.43 16 21 C -0.20 -1.88 10.81 -39.70 -0.43 -2.31 16 22 C 0.02 0.19 5.90 -35.62 -0.21 -0.02 16 23 C -0.08 -0.60 6.24 -91.77 -0.57 -1.17 16 24 H 0.13 0.68 8.14 -51.93 -0.42 0.26 16 25 C -0.17 -1.13 9.82 -26.70 -0.26 -1.39 16 26 C -0.14 -0.92 6.41 -90.58 -0.58 -1.50 16 27 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 28 C -0.13 -0.97 9.15 37.16 0.34 -0.63 16 29 O -0.17 -1.88 9.60 5.70 0.05 -1.83 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.45 7.22 -51.93 -0.37 0.07 16 33 H 0.08 0.62 6.44 -51.93 -0.33 0.29 16 34 H 0.08 0.87 8.07 -51.93 -0.42 0.45 16 35 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 36 H 0.08 1.63 7.42 -51.93 -0.39 1.25 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.38 10.53 7.67 -40.82 -0.31 10.22 16 40 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.10 0.89 7.40 -51.93 -0.38 0.50 16 42 H 0.10 0.80 7.18 -51.93 -0.37 0.42 16 43 H 0.10 1.07 8.10 -51.93 -0.42 0.65 16 44 H 0.09 1.07 8.10 -51.93 -0.42 0.65 16 45 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 46 H 0.15 1.03 8.06 -52.48 -0.42 0.61 16 47 H 0.10 0.83 7.88 -51.93 -0.41 0.42 16 48 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.06 0.57 7.25 -51.93 -0.38 0.19 16 50 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 51 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 419.93 15.07 6.33 6.33 Total: -1.00 -34.66 419.93 -10.08 -44.74 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -8.83 Total: 6.49 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -2.66 Total: -7.07 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: -0.04 Total: -56.67 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.14 Total: -11.75 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -34.66 -10.08 -44.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716228352.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.687 kcal (2) G-P(sol) polarization free energy of solvation -34.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds