Wall clock time and date at job start Tue Mar 31 2020 18:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47296 * 2 1 4 4 C 1.46500 * 119.99679 * 90.00379 * 3 2 1 5 5 C 1.52997 * 109.47473 * 90.00212 * 4 3 2 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 3 7 7 C 1.36936 * 119.99992 * 179.97438 * 6 5 4 8 8 H 1.08006 * 119.99834 * 0.02562 * 7 6 5 9 9 C 1.38801 * 120.00093 * 180.02562 * 7 6 5 10 10 N 1.31619 * 120.00176 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00265 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46951 * 89.99797 * 11 9 7 13 13 H 1.48500 * 109.47313 * 210.00112 * 11 9 7 14 14 H 1.48501 * 109.46991 * 330.00153 * 11 9 7 15 15 C 1.34774 * 120.00048 * 270.00344 * 3 2 1 16 16 O 1.21286 * 119.99764 * 179.97438 * 15 3 2 17 17 C 1.50697 * 120.00258 * 0.02562 * 15 3 2 18 18 C 1.53002 * 109.47440 * 180.02562 * 17 15 3 19 19 C 1.50689 * 109.47440 * 179.97438 * 18 17 15 20 20 C 1.34519 * 125.78925 * 89.99343 * 19 18 17 21 21 C 1.41385 * 106.83978 * 180.02562 * 20 19 18 22 22 C 1.34513 * 106.84129 * 0.02562 * 21 20 19 23 23 C 1.50702 * 125.78823 * 180.02562 * 22 21 20 24 24 H 1.08991 * 115.54976 * 334.41537 * 23 22 21 25 25 C 1.53002 * 117.49741 * 188.74113 * 23 22 21 26 26 C 1.53004 * 117.49851 * 120.08654 * 23 22 21 27 27 H 1.09002 * 117.49742 * 214.98047 * 26 23 22 28 28 C 1.53006 * 117.49988 * 359.97438 * 26 23 22 29 29 O 1.34302 * 125.79082 * 269.69224 * 19 18 17 30 30 H 1.09000 * 109.46810 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47084 * 299.99552 * 1 2 3 32 32 H 1.08999 * 109.47010 * 59.99976 * 1 2 3 33 33 H 1.09001 * 109.47084 * 240.00448 * 2 1 3 34 34 H 1.08998 * 109.47584 * 120.00522 * 2 1 3 35 35 H 1.09002 * 109.47129 * 329.99954 * 4 3 2 36 36 H 1.08998 * 109.46845 * 210.00761 * 4 3 2 37 37 H 1.09002 * 109.47153 * 59.99757 * 5 4 3 38 38 H 1.09001 * 109.46832 * 299.99948 * 5 4 3 39 39 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 40 40 H 0.97001 * 120.00803 * 179.97438 * 10 9 7 41 41 H 1.09002 * 109.46816 * 299.99717 * 17 15 3 42 42 H 1.08991 * 109.47311 * 59.99425 * 17 15 3 43 43 H 1.09000 * 109.46639 * 300.00125 * 18 17 15 44 44 H 1.08998 * 109.47182 * 59.99154 * 18 17 15 45 45 H 1.07998 * 126.58167 * 0.04233 * 20 19 18 46 46 H 1.08003 * 126.58051 * 180.02562 * 21 20 19 47 47 H 1.09000 * 117.49766 * 0.02562 * 25 23 22 48 48 H 1.09003 * 117.49700 * 144.99811 * 25 23 22 49 49 H 1.08999 * 109.46785 * 59.99660 * 28 26 23 50 50 H 1.08999 * 109.47262 * 180.02562 * 28 26 23 51 51 H 1.09001 * 109.46858 * 300.00629 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 1.2688 5 6 3.7076 1.8313 1.7104 6 7 3.9520 2.5224 2.9789 7 6 5.1841 2.4495 3.5720 8 1 5.9758 1.8829 3.1044 9 6 5.4154 3.1038 4.7741 10 7 4.4505 3.7938 5.3442 11 14 7.0964 3.0050 5.5829 12 1 7.9458 4.1220 5.0971 13 1 6.9433 3.1041 7.0566 14 1 7.7364 1.7101 5.2377 15 6 2.2429 2.0166 -1.1672 16 8 2.6468 3.1602 -1.1671 17 6 1.9912 1.3065 -2.4723 18 6 2.3233 2.2436 -3.6352 19 6 2.0721 1.5334 -4.9403 20 6 0.9123 1.5267 -5.6218 21 6 1.1221 0.7427 -6.7795 22 6 2.3972 0.3167 -6.7359 23 6 3.0715 -0.5530 -7.7655 24 1 2.4084 -1.1936 -8.3467 25 6 4.4628 -1.0946 -7.4309 26 6 4.3035 0.0154 -8.4728 27 1 4.4510 -0.2518 -9.5192 28 6 4.7563 1.4234 -8.0811 29 8 2.9698 0.8043 -5.6232 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.5818 1.6876 2.0284 36 1 2.0955 3.1409 1.1385 37 1 4.3884 2.2155 0.9507 38 1 3.8746 0.7621 1.8407 39 1 3.2408 3.0309 3.3989 40 1 4.6120 4.2508 6.1844 41 1 2.6210 0.4188 -2.5303 42 1 0.9432 1.0127 -2.5298 43 1 1.6938 3.1316 -3.5773 44 1 3.3714 2.5371 -3.5775 45 1 -0.0032 2.0248 -5.3390 46 1 0.3975 0.5271 -7.5508 47 1 4.8902 -0.8222 -6.4659 48 1 4.7149 -2.0917 -7.7919 49 1 4.9987 1.4446 -7.0186 50 1 5.6381 1.6960 -8.6609 51 1 3.9542 2.1328 -8.2849 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716228352.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:50 Heat of formation + Delta-G solvation = -15.400311 kcal Electronic energy + Delta-G solvation = -28204.524134 eV Core-core repulsion = 24298.661598 eV Total energy + Delta-G solvation = -3905.862536 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.59585 -41.10864 -38.68281 -37.62377 -36.38921 -35.09666 -33.83456 -33.49560 -31.56812 -30.52206 -29.54341 -28.78017 -26.40451 -25.22083 -24.23452 -23.35932 -22.83713 -22.70637 -21.53364 -20.63475 -20.05439 -19.19339 -18.34219 -17.49476 -17.22878 -17.13667 -16.61915 -16.61280 -16.34987 -15.59827 -15.50386 -15.17878 -15.13582 -14.83123 -14.62348 -14.25383 -14.17146 -14.02445 -13.74023 -13.65488 -13.44285 -13.32117 -13.07103 -13.03928 -12.93792 -12.80471 -12.72611 -12.61683 -12.39399 -12.31094 -12.18225 -12.14434 -11.89180 -11.84912 -11.52233 -11.00769 -10.98180 -10.91316 -10.70283 -9.74350 -9.09959 -9.08852 -7.99682 -5.30735 0.69500 1.44442 1.47704 1.55708 1.58756 1.62669 1.84175 2.04753 2.54211 2.89364 3.33077 3.36822 3.56815 3.75399 3.85472 3.90992 3.92167 4.02140 4.04735 4.13545 4.18064 4.20389 4.21734 4.34639 4.41552 4.43884 4.51928 4.54375 4.58307 4.70716 4.77540 4.83030 4.86464 4.88705 4.90946 4.95238 4.98023 5.05253 5.06100 5.09139 5.12198 5.16263 5.22255 5.38808 5.38992 5.41455 5.55742 5.64965 6.21670 6.27049 6.40647 7.14818 7.27716 7.99276 8.24930 9.23562 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014471 B = 0.002039 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.378020 B =13731.239339 C =14817.899222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.095 3.905 3 N -0.605 5.605 4 C 0.123 3.877 5 C 0.149 3.851 6 N -0.743 5.743 7 C -0.251 4.251 8 H 0.072 0.928 9 C -0.074 4.074 10 N -0.967 5.967 11 Si 0.979 3.021 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.268 1.268 15 C 0.506 3.494 16 O -0.585 6.585 17 C -0.120 4.120 18 C -0.020 4.020 19 C -0.024 4.024 20 C -0.205 4.205 21 C -0.213 4.213 22 C 0.012 3.988 23 C -0.089 4.089 24 H 0.157 0.843 25 C -0.168 4.168 26 C -0.137 4.137 27 H 0.136 0.864 28 C -0.127 4.127 29 O -0.188 6.188 30 H 0.090 0.910 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.059 0.941 37 H -0.001 1.001 38 H 0.029 0.971 39 H 0.376 0.624 40 H 0.254 0.746 41 H 0.110 0.890 42 H 0.125 0.875 43 H 0.100 0.900 44 H 0.068 0.932 45 H 0.163 0.837 46 H 0.166 0.834 47 H 0.082 0.918 48 H 0.123 0.877 49 H 0.041 0.959 50 H 0.073 0.927 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.138 -14.294 -30.306 35.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.027 4.027 3 N -0.337 5.337 4 C -0.001 4.001 5 C 0.021 3.979 6 N -0.386 5.386 7 C -0.383 4.383 8 H 0.090 0.910 9 C -0.267 4.267 10 N -0.617 5.617 11 Si 0.807 3.193 12 H -0.215 1.215 13 H -0.216 1.216 14 H -0.193 1.193 15 C 0.296 3.704 16 O -0.466 6.466 17 C -0.159 4.159 18 C -0.057 4.057 19 C -0.073 4.073 20 C -0.224 4.224 21 C -0.232 4.232 22 C -0.038 4.038 23 C -0.107 4.107 24 H 0.174 0.826 25 C -0.205 4.205 26 C -0.155 4.155 27 H 0.153 0.847 28 C -0.184 4.184 29 O -0.085 6.085 30 H 0.109 0.891 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.121 0.879 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.078 0.922 37 H 0.017 0.983 38 H 0.047 0.953 39 H 0.208 0.792 40 H 0.062 0.938 41 H 0.128 0.872 42 H 0.143 0.857 43 H 0.118 0.882 44 H 0.087 0.913 45 H 0.181 0.819 46 H 0.184 0.816 47 H 0.101 0.899 48 H 0.141 0.859 49 H 0.060 0.940 50 H 0.092 0.908 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.469 -13.832 -30.197 34.537 hybrid contribution 0.510 0.726 1.093 1.408 sum -8.958 -13.106 -29.104 33.152 Atomic orbital electron populations 1.22177 0.94267 1.03676 1.02276 1.21929 0.95666 0.80212 1.04851 1.48053 1.65126 1.15666 1.04836 1.21292 0.95682 0.97650 0.85475 1.20952 0.95002 0.95118 0.86785 1.42395 1.12053 1.61134 1.23045 1.19583 0.90306 1.25789 1.02625 0.90958 1.25645 1.01817 1.00375 0.98831 1.69816 1.33602 1.38421 1.19889 0.85071 0.79016 0.78034 0.77196 1.21505 1.21569 1.19252 1.21285 0.76262 0.86295 0.86557 1.90725 1.47443 1.20337 1.88048 1.21677 1.06121 0.99378 0.88743 1.19734 1.03712 0.96606 0.85680 1.22354 0.88749 0.99512 0.96686 1.21838 0.99243 1.04853 0.96462 1.21758 0.96733 1.03467 1.01197 1.21794 0.92945 1.00866 0.88191 1.20862 0.91305 1.00947 0.97554 0.82564 1.23243 0.97316 0.99806 1.00134 1.22616 0.99124 0.94731 0.99042 0.84668 1.21375 1.01340 0.94857 1.00811 1.83938 1.40372 1.53424 1.30789 0.89093 0.93318 0.91945 0.87898 0.89824 0.88964 0.92206 0.98305 0.95303 0.79243 0.93756 0.87160 0.85679 0.88164 0.91303 0.81942 0.81615 0.89907 0.85896 0.94016 0.90764 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 10.24 71.98 0.74 -1.60 16 2 C 0.09 1.69 5.93 86.38 0.51 2.20 16 3 N -0.60 -16.49 2.47 -821.82 -2.03 -18.52 16 4 C 0.12 4.34 5.52 86.38 0.48 4.81 16 5 C 0.15 6.54 6.58 86.38 0.57 7.11 16 6 N -0.74 -40.29 5.60 -343.45 -1.92 -42.21 16 7 C -0.25 -14.80 9.99 84.03 0.84 -13.96 16 8 H 0.07 4.12 7.83 -2.91 -0.02 4.10 16 9 C -0.07 -4.41 5.50 84.86 0.47 -3.95 16 10 N -0.97 -60.69 13.06 21.65 0.28 -60.41 16 11 Si 0.98 47.42 29.55 68.60 2.03 49.45 16 12 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 13 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 14 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 15 C 0.51 14.66 7.67 87.66 0.67 15.33 16 16 O -0.59 -22.96 15.56 -3.05 -0.05 -23.01 16 17 C -0.12 -2.30 4.23 29.85 0.13 -2.17 16 18 C -0.02 -0.42 5.04 29.85 0.15 -0.27 16 19 C -0.02 -0.48 6.57 24.83 0.16 -0.32 16 20 C -0.20 -3.64 10.81 22.19 0.24 -3.40 16 21 C -0.21 -3.51 10.81 22.19 0.24 -3.27 16 22 C 0.01 0.21 5.90 24.83 0.15 0.36 16 23 C -0.09 -1.09 6.24 -11.54 -0.07 -1.17 16 24 H 0.16 1.12 8.14 -2.39 -0.02 1.10 16 25 C -0.17 -2.02 9.82 30.62 0.30 -1.72 16 26 C -0.14 -1.57 6.41 -10.77 -0.07 -1.64 16 27 H 0.14 0.93 8.14 -2.39 -0.02 0.91 16 28 C -0.13 -1.90 9.15 71.98 0.66 -1.24 16 29 O -0.19 -4.14 9.60 -2.51 -0.02 -4.16 16 30 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 0.81 7.22 -2.39 -0.02 0.79 16 33 H 0.10 1.33 6.44 -2.39 -0.02 1.31 16 34 H 0.08 1.54 8.07 -2.39 -0.02 1.52 16 35 H 0.09 2.95 8.07 -2.39 -0.02 2.93 16 36 H 0.06 2.42 7.42 -2.39 -0.02 2.40 16 37 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 38 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.38 21.27 7.67 -92.71 -0.71 20.56 16 40 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 41 H 0.11 1.83 7.40 -2.39 -0.02 1.81 16 42 H 0.13 1.71 7.18 -2.39 -0.02 1.69 16 43 H 0.10 2.16 8.10 -2.39 -0.02 2.14 16 44 H 0.07 1.75 8.10 -2.39 -0.02 1.73 16 45 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 46 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 47 H 0.08 1.33 7.88 -2.39 -0.02 1.31 16 48 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.04 0.79 7.25 -2.39 -0.02 0.77 16 50 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 51 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -77.02 419.93 4.64 -72.39 By element: Atomic # 1 Polarization: 31.17 SS G_CDS: 0.20 Total: 31.36 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: 6.16 Total: -4.89 kcal Atomic # 7 Polarization: -117.47 SS G_CDS: -3.67 Total: -121.14 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -0.07 Total: -27.17 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Total: -77.02 4.64 -72.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716228352.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.988 kcal (2) G-P(sol) polarization free energy of solvation -77.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds