Wall clock time and date at job start Tue Mar 31 2020 18:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.47201 * 2 1 4 4 C 1.46496 * 119.99896 * 269.99926 * 3 2 1 5 5 C 1.53001 * 109.47073 * 269.99770 * 4 3 2 6 6 N 1.46499 * 109.47396 * 180.02562 * 5 4 3 7 7 C 1.36938 * 120.00250 * 180.02562 * 6 5 4 8 8 H 1.07998 * 119.99948 * 359.97438 * 7 6 5 9 9 C 1.38806 * 120.00273 * 180.02562 * 7 6 5 10 10 N 1.31624 * 119.99652 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00278 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47276 * 89.99611 * 11 9 7 13 13 H 1.48505 * 109.47013 * 209.99988 * 11 9 7 14 14 H 1.48495 * 109.46906 * 329.99478 * 11 9 7 15 15 C 1.34779 * 120.00050 * 89.99866 * 3 2 1 16 16 O 1.21273 * 120.00093 * 180.02562 * 15 3 2 17 17 C 1.50706 * 119.99767 * 359.97438 * 15 3 2 18 18 C 1.53000 * 109.46735 * 180.02562 * 17 15 3 19 19 C 1.50703 * 109.46912 * 180.02562 * 18 17 15 20 20 C 1.34510 * 125.78886 * 89.72067 * 19 18 17 21 21 C 1.41384 * 106.84002 * 179.89033 * 20 19 18 22 22 C 1.34518 * 106.83852 * 0.36937 * 21 20 19 23 23 C 1.50706 * 125.78706 * 179.75414 * 22 21 20 24 24 H 1.09002 * 115.55073 * 25.58083 * 23 22 21 25 25 C 1.52998 * 117.49582 * 171.25311 * 23 22 21 26 26 C 1.53005 * 117.49501 * 239.91190 * 23 22 21 27 27 H 1.08996 * 117.49636 * 145.02413 * 26 23 22 28 28 C 1.52996 * 117.50084 * 0.02562 * 26 23 22 29 29 O 1.34295 * 108.42175 * 359.77186 * 22 21 20 30 30 H 1.08992 * 109.47078 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47448 * 300.00222 * 1 2 3 32 32 H 1.09001 * 109.46659 * 60.00103 * 1 2 3 33 33 H 1.08996 * 109.47448 * 239.99777 * 2 1 3 34 34 H 1.09003 * 109.47167 * 119.99786 * 2 1 3 35 35 H 1.08998 * 109.47205 * 29.99486 * 4 3 2 36 36 H 1.08997 * 109.47416 * 150.00347 * 4 3 2 37 37 H 1.09003 * 109.47478 * 300.00268 * 5 4 3 38 38 H 1.09006 * 109.47070 * 59.99803 * 5 4 3 39 39 H 0.96998 * 120.00034 * 359.97438 * 6 5 4 40 40 H 0.97009 * 119.99722 * 179.97438 * 10 9 7 41 41 H 1.09001 * 109.46797 * 60.00350 * 17 15 3 42 42 H 1.08992 * 109.47518 * 300.00347 * 17 15 3 43 43 H 1.09002 * 109.47398 * 300.00410 * 18 17 15 44 44 H 1.09001 * 109.47194 * 60.00591 * 18 17 15 45 45 H 1.07994 * 126.58284 * 0.02562 * 20 19 18 46 46 H 1.08004 * 126.58094 * 180.12078 * 21 20 19 47 47 H 1.09002 * 117.49489 * 214.97505 * 25 23 22 48 48 H 1.09000 * 117.50114 * 359.97438 * 25 23 22 49 49 H 1.08996 * 109.47022 * 59.99603 * 28 26 23 50 50 H 1.09001 * 109.47264 * 180.02562 * 28 26 23 51 51 H 1.09002 * 109.46986 * 300.00391 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.7076 1.8314 -1.7103 6 7 3.9520 2.5225 -2.9787 7 6 5.1841 2.4496 -3.5719 8 1 5.9758 1.8830 -3.1043 9 6 5.4159 3.1048 -4.7734 10 7 4.4511 3.7957 -5.3429 11 14 7.0964 3.0048 -5.5829 12 1 7.1362 1.8362 -6.4983 13 1 7.3484 4.2477 -6.3555 14 1 8.1405 2.8510 -4.5382 15 6 2.2430 2.0166 1.1672 16 8 2.6468 3.1601 1.1672 17 6 1.9912 1.3064 2.4723 18 6 2.3221 2.2440 3.6352 19 6 2.0710 1.5335 4.9404 20 6 2.9672 0.7950 5.6191 21 6 2.3128 0.3215 6.7795 22 6 1.0534 0.7922 6.7362 23 6 -0.0179 0.5390 7.7655 24 1 0.3393 0.3167 8.7710 25 6 -1.3213 1.3300 7.6376 26 6 -1.2948 -0.1624 7.2981 27 1 -1.7779 -0.8459 7.9963 28 6 -1.3861 -0.5537 5.8218 29 8 0.9127 1.5257 5.6201 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 1.5818 1.6876 -2.0284 36 1 2.0957 3.1410 -1.1384 37 1 4.3884 2.2155 -0.9507 38 1 3.8746 0.7621 -1.8406 39 1 3.2409 3.0310 -3.3989 40 1 4.6132 4.2539 -6.1825 41 1 2.6211 0.4187 2.5303 42 1 0.9432 1.0126 2.5299 43 1 3.3701 2.5382 3.5779 44 1 1.6919 3.1314 3.5771 45 1 3.9908 0.6026 5.3338 46 1 2.7407 -0.3022 7.5505 47 1 -1.8218 1.6276 8.5591 48 1 -1.4038 2.0338 6.8094 49 1 -0.5747 -1.2390 5.5768 50 1 -2.3429 -1.0405 5.6334 51 1 -1.3056 0.3403 5.2034 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716228353.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:55 Heat of formation + Delta-G solvation = 3.946979 kcal Electronic energy + Delta-G solvation = -28332.359341 eV Core-core repulsion = 24427.335766 eV Total energy + Delta-G solvation = -3905.023575 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.86784 -39.93670 -38.16899 -36.28732 -34.67173 -34.09854 -33.03173 -31.73589 -30.30002 -29.69759 -28.71362 -27.50132 -25.19693 -23.68874 -23.24847 -22.33956 -22.13717 -21.39759 -20.89304 -19.96262 -18.86309 -17.46120 -17.09695 -16.61508 -16.36178 -16.13885 -15.80906 -15.52841 -14.81852 -14.56780 -14.01560 -13.93661 -13.73026 -13.58816 -13.50964 -13.42739 -13.13789 -13.03786 -12.96216 -12.81831 -12.53120 -12.46086 -12.32647 -12.17600 -11.88557 -11.80029 -11.44015 -11.25499 -11.08327 -10.97828 -10.95913 -10.86199 -10.65004 -10.47699 -10.09591 -10.02864 -9.78033 -9.62605 -8.85185 -8.51604 -8.39132 -6.90918 -5.74088 -3.03209 1.41971 2.34942 2.57423 2.73464 3.10097 3.40329 3.45701 3.50721 3.52973 4.04645 4.23645 4.33099 4.46053 4.63093 4.69053 4.75423 4.79061 4.85287 4.86856 4.89589 5.01937 5.10089 5.24164 5.25673 5.32695 5.34587 5.40734 5.48701 5.53075 5.53887 5.62365 5.63133 5.65599 5.67541 5.68818 5.74980 5.83479 5.87167 5.87987 6.00127 6.04831 6.08142 6.17224 6.32917 6.58649 6.76605 6.93743 6.99162 7.52139 7.72267 8.29356 8.44547 9.55301 10.11802 10.46813 11.48807 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.022701 B = 0.001927 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.105438 B =14527.273500 C =15150.241911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.102 3.898 3 N -0.607 5.607 4 C 0.108 3.892 5 C 0.143 3.857 6 N -0.730 5.730 7 C -0.237 4.237 8 H 0.070 0.930 9 C -0.015 4.015 10 N -0.933 5.933 11 Si 0.909 3.091 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.282 1.282 15 C 0.512 3.488 16 O -0.533 6.533 17 C -0.135 4.135 18 C -0.025 4.025 19 C -0.006 4.006 20 C -0.206 4.206 21 C -0.204 4.204 22 C 0.018 3.982 23 C -0.082 4.082 24 H 0.132 0.868 25 C -0.167 4.167 26 C -0.139 4.139 27 H 0.112 0.888 28 C -0.125 4.125 29 O -0.170 6.170 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.023 0.977 38 H 0.017 0.983 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.104 0.896 44 H 0.089 0.911 45 H 0.148 0.852 46 H 0.145 0.855 47 H 0.101 0.899 48 H 0.102 0.898 49 H 0.060 0.940 50 H 0.062 0.938 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.900 -11.907 27.604 33.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.021 4.021 3 N -0.340 5.340 4 C -0.015 4.015 5 C 0.015 3.985 6 N -0.375 5.375 7 C -0.369 4.369 8 H 0.088 0.912 9 C -0.211 4.211 10 N -0.582 5.582 11 Si 0.740 3.260 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.208 1.208 15 C 0.299 3.701 16 O -0.410 6.410 17 C -0.175 4.175 18 C -0.063 4.063 19 C -0.056 4.056 20 C -0.225 4.225 21 C -0.223 4.223 22 C -0.031 4.031 23 C -0.100 4.100 24 H 0.150 0.850 25 C -0.204 4.204 26 C -0.157 4.157 27 H 0.130 0.870 28 C -0.182 4.182 29 O -0.067 6.067 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.040 0.960 38 H 0.035 0.965 39 H 0.217 0.783 40 H 0.065 0.935 41 H 0.115 0.885 42 H 0.112 0.888 43 H 0.122 0.878 44 H 0.107 0.893 45 H 0.166 0.834 46 H 0.163 0.837 47 H 0.120 0.880 48 H 0.120 0.880 49 H 0.079 0.921 50 H 0.081 0.919 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.772 -11.180 27.465 32.696 hybrid contribution 0.928 -0.126 -0.541 1.082 sum -12.844 -11.306 26.924 31.902 Atomic orbital electron populations 1.22217 0.95942 1.02200 1.02616 1.21599 0.94326 0.82648 1.03554 1.47950 1.65530 1.14226 1.06301 1.21692 0.98083 0.98411 0.83293 1.20904 0.92796 0.95435 0.89388 1.42211 1.12891 1.60754 1.21652 1.19207 0.89317 1.25995 1.02351 0.91210 1.24754 0.97878 1.00348 0.98090 1.69668 1.31597 1.37343 1.19598 0.86156 0.83658 0.76953 0.79231 1.21729 1.21719 1.20760 1.20493 0.77569 0.86766 0.85249 1.90744 1.45119 1.17834 1.87268 1.21713 1.04134 0.99812 0.91846 1.19879 1.04497 0.96973 0.84908 1.22424 0.83819 1.02846 0.96494 1.21590 1.01215 1.03133 0.96612 1.21456 0.93794 1.06112 1.00919 1.21211 0.95745 0.97876 0.88315 1.20600 0.86326 1.06945 0.96166 0.84998 1.23214 0.98687 0.94512 1.04020 1.22523 0.98970 0.95512 0.98711 0.86991 1.21379 1.01880 1.01942 0.93022 1.83932 1.35407 1.57412 1.29978 0.91512 0.92619 0.91953 0.89733 0.90487 0.90585 0.89729 0.95953 0.96513 0.78275 0.93506 0.88489 0.88754 0.87814 0.89265 0.83391 0.83686 0.88019 0.88004 0.92097 0.91915 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 10.24 37.16 0.38 -1.07 16 2 C 0.10 1.01 5.93 -4.04 -0.02 0.99 16 3 N -0.61 -8.40 2.47 -173.69 -0.43 -8.82 16 4 C 0.11 1.86 5.52 -4.04 -0.02 1.84 16 5 C 0.14 3.06 6.58 -4.04 -0.03 3.03 16 6 N -0.73 -19.29 5.60 -59.91 -0.34 -19.62 16 7 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 10 N -0.93 -28.80 13.06 55.49 0.72 -28.08 16 11 Si 0.91 22.91 29.55 -169.99 -5.02 17.88 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 13 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 14 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 15 C 0.51 7.37 7.67 -10.98 -0.08 7.28 16 16 O -0.53 -9.99 15.56 5.56 0.09 -9.90 16 17 C -0.14 -1.36 4.24 -27.88 -0.12 -1.48 16 18 C -0.03 -0.27 5.04 -27.88 -0.14 -0.41 16 19 C -0.01 -0.06 6.57 -35.62 -0.23 -0.30 16 20 C -0.21 -2.04 10.81 -39.70 -0.43 -2.47 16 21 C -0.20 -1.89 10.81 -39.70 -0.43 -2.32 16 22 C 0.02 0.17 5.90 -35.62 -0.21 -0.04 16 23 C -0.08 -0.57 6.24 -91.77 -0.57 -1.14 16 24 H 0.13 0.67 8.14 -51.93 -0.42 0.25 16 25 C -0.17 -1.06 9.82 -26.69 -0.26 -1.32 16 26 C -0.14 -0.84 6.41 -90.58 -0.58 -1.42 16 27 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 28 C -0.13 -0.85 9.15 37.16 0.34 -0.51 16 29 O -0.17 -1.84 9.63 5.72 0.06 -1.79 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.46 7.22 -51.93 -0.37 0.08 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 34 H 0.08 0.61 6.44 -51.93 -0.33 0.27 16 35 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 36 H 0.08 1.63 7.42 -51.93 -0.39 1.25 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.38 10.51 7.67 -40.82 -0.31 10.20 16 40 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 41 H 0.10 0.83 7.40 -51.93 -0.38 0.45 16 42 H 0.09 0.82 7.18 -51.93 -0.37 0.45 16 43 H 0.10 1.14 8.10 -51.93 -0.42 0.72 16 44 H 0.09 1.01 8.10 -51.93 -0.42 0.59 16 45 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 46 H 0.15 1.06 8.06 -52.48 -0.42 0.64 16 47 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.10 0.77 7.88 -51.93 -0.41 0.36 16 49 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 51 H 0.06 0.49 7.27 -51.93 -0.38 0.11 16 LS Contribution 419.96 15.07 6.33 6.33 Total: -1.00 -34.61 419.96 -10.08 -44.69 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -8.83 Total: 6.23 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -2.66 Total: -6.91 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: -0.04 Total: -56.53 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.14 Total: -11.69 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -34.61 -10.08 -44.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716228353.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.633 kcal (2) G-P(sol) polarization free energy of solvation -34.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds