Wall clock time and date at job start Tue Mar 31 2020 18:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.47201 * 2 1 4 4 C 1.46496 * 119.99896 * 269.99926 * 3 2 1 5 5 C 1.53001 * 109.47073 * 269.99770 * 4 3 2 6 6 N 1.46499 * 109.47396 * 180.02562 * 5 4 3 7 7 C 1.36938 * 120.00250 * 180.02562 * 6 5 4 8 8 H 1.07998 * 119.99948 * 359.97438 * 7 6 5 9 9 C 1.38806 * 120.00273 * 180.02562 * 7 6 5 10 10 N 1.31624 * 119.99652 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00278 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47276 * 89.99611 * 11 9 7 13 13 H 1.48505 * 109.47013 * 209.99988 * 11 9 7 14 14 H 1.48495 * 109.46906 * 329.99478 * 11 9 7 15 15 C 1.34779 * 120.00050 * 89.99866 * 3 2 1 16 16 O 1.21273 * 120.00093 * 180.02562 * 15 3 2 17 17 C 1.50706 * 119.99767 * 359.97438 * 15 3 2 18 18 C 1.53000 * 109.46735 * 180.02562 * 17 15 3 19 19 C 1.50703 * 109.46912 * 180.02562 * 18 17 15 20 20 C 1.34510 * 125.78886 * 89.72067 * 19 18 17 21 21 C 1.41384 * 106.84002 * 179.89033 * 20 19 18 22 22 C 1.34518 * 106.83852 * 0.36937 * 21 20 19 23 23 C 1.50706 * 125.78706 * 179.75414 * 22 21 20 24 24 H 1.09002 * 115.55073 * 25.58083 * 23 22 21 25 25 C 1.52998 * 117.49582 * 171.25311 * 23 22 21 26 26 C 1.53005 * 117.49501 * 239.91190 * 23 22 21 27 27 H 1.08996 * 117.49636 * 145.02413 * 26 23 22 28 28 C 1.52996 * 117.50084 * 0.02562 * 26 23 22 29 29 O 1.34295 * 108.42175 * 359.77186 * 22 21 20 30 30 H 1.08992 * 109.47078 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47448 * 300.00222 * 1 2 3 32 32 H 1.09001 * 109.46659 * 60.00103 * 1 2 3 33 33 H 1.08996 * 109.47448 * 239.99777 * 2 1 3 34 34 H 1.09003 * 109.47167 * 119.99786 * 2 1 3 35 35 H 1.08998 * 109.47205 * 29.99486 * 4 3 2 36 36 H 1.08997 * 109.47416 * 150.00347 * 4 3 2 37 37 H 1.09003 * 109.47478 * 300.00268 * 5 4 3 38 38 H 1.09006 * 109.47070 * 59.99803 * 5 4 3 39 39 H 0.96998 * 120.00034 * 359.97438 * 6 5 4 40 40 H 0.97009 * 119.99722 * 179.97438 * 10 9 7 41 41 H 1.09001 * 109.46797 * 60.00350 * 17 15 3 42 42 H 1.08992 * 109.47518 * 300.00347 * 17 15 3 43 43 H 1.09002 * 109.47398 * 300.00410 * 18 17 15 44 44 H 1.09001 * 109.47194 * 60.00591 * 18 17 15 45 45 H 1.07994 * 126.58284 * 0.02562 * 20 19 18 46 46 H 1.08004 * 126.58094 * 180.12078 * 21 20 19 47 47 H 1.09002 * 117.49489 * 214.97505 * 25 23 22 48 48 H 1.09000 * 117.50114 * 359.97438 * 25 23 22 49 49 H 1.08996 * 109.47022 * 59.99603 * 28 26 23 50 50 H 1.09001 * 109.47264 * 180.02562 * 28 26 23 51 51 H 1.09002 * 109.46986 * 300.00391 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.7076 1.8314 -1.7103 6 7 3.9520 2.5225 -2.9787 7 6 5.1841 2.4496 -3.5719 8 1 5.9758 1.8830 -3.1043 9 6 5.4159 3.1048 -4.7734 10 7 4.4511 3.7957 -5.3429 11 14 7.0964 3.0048 -5.5829 12 1 7.1362 1.8362 -6.4983 13 1 7.3484 4.2477 -6.3555 14 1 8.1405 2.8510 -4.5382 15 6 2.2430 2.0166 1.1672 16 8 2.6468 3.1601 1.1672 17 6 1.9912 1.3064 2.4723 18 6 2.3221 2.2440 3.6352 19 6 2.0710 1.5335 4.9404 20 6 2.9672 0.7950 5.6191 21 6 2.3128 0.3215 6.7795 22 6 1.0534 0.7922 6.7362 23 6 -0.0179 0.5390 7.7655 24 1 0.3393 0.3167 8.7710 25 6 -1.3213 1.3300 7.6376 26 6 -1.2948 -0.1624 7.2981 27 1 -1.7779 -0.8459 7.9963 28 6 -1.3861 -0.5537 5.8218 29 8 0.9127 1.5257 5.6201 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 1.5818 1.6876 -2.0284 36 1 2.0957 3.1410 -1.1384 37 1 4.3884 2.2155 -0.9507 38 1 3.8746 0.7621 -1.8406 39 1 3.2409 3.0310 -3.3989 40 1 4.6132 4.2539 -6.1825 41 1 2.6211 0.4187 2.5303 42 1 0.9432 1.0126 2.5299 43 1 3.3701 2.5382 3.5779 44 1 1.6919 3.1314 3.5771 45 1 3.9908 0.6026 5.3338 46 1 2.7407 -0.3022 7.5505 47 1 -1.8218 1.6276 8.5591 48 1 -1.4038 2.0338 6.8094 49 1 -0.5747 -1.2390 5.5768 50 1 -2.3429 -1.0405 5.6334 51 1 -1.3056 0.3403 5.2034 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716228353.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:54 Heat of formation + Delta-G solvation = -15.275864 kcal Electronic energy + Delta-G solvation = -28333.192906 eV Core-core repulsion = 24427.335766 eV Total energy + Delta-G solvation = -3905.857140 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.59841 -41.10854 -38.66853 -37.62143 -36.38408 -35.09684 -33.83762 -33.49071 -31.57145 -30.50416 -29.51691 -28.77546 -26.39819 -25.21496 -24.23881 -23.35293 -22.84045 -22.70463 -21.51610 -20.62954 -20.05335 -19.18716 -18.35452 -17.46968 -17.27901 -17.04613 -16.63981 -16.60363 -16.38904 -15.59104 -15.49096 -15.18728 -15.09988 -14.78192 -14.53409 -14.45094 -14.12542 -14.02902 -13.74144 -13.57091 -13.38576 -13.33653 -13.10574 -13.06263 -12.90223 -12.78994 -12.72353 -12.60753 -12.37000 -12.31052 -12.18575 -12.14301 -11.89363 -11.85827 -11.50284 -10.99611 -10.96480 -10.91161 -10.70689 -9.74221 -9.10055 -9.07966 -7.99086 -5.30010 0.69326 1.45115 1.48114 1.56451 1.59372 1.62595 1.82122 2.04562 2.54843 2.90563 3.33775 3.36829 3.57167 3.76682 3.84844 3.91727 3.94383 4.00348 4.06411 4.14027 4.17451 4.20632 4.22121 4.35690 4.43080 4.45166 4.51905 4.54857 4.57730 4.71775 4.78385 4.87457 4.88174 4.89631 4.91336 4.94868 4.97572 5.06041 5.07040 5.09625 5.15868 5.16887 5.22388 5.37314 5.42235 5.42510 5.55950 5.63684 6.22293 6.26110 6.40798 7.15008 7.28326 8.00214 8.25457 9.24216 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.022701 B = 0.001927 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.105438 B =14527.273500 C =15150.241911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.095 3.905 3 N -0.605 5.605 4 C 0.123 3.877 5 C 0.150 3.850 6 N -0.743 5.743 7 C -0.251 4.251 8 H 0.074 0.926 9 C -0.075 4.075 10 N -0.968 5.968 11 Si 0.979 3.021 12 H -0.281 1.281 13 H -0.293 1.293 14 H -0.272 1.272 15 C 0.506 3.494 16 O -0.585 6.585 17 C -0.120 4.120 18 C -0.019 4.019 19 C -0.022 4.022 20 C -0.208 4.208 21 C -0.214 4.214 22 C 0.014 3.986 23 C -0.093 4.093 24 H 0.153 0.847 25 C -0.170 4.170 26 C -0.133 4.133 27 H 0.134 0.866 28 C -0.126 4.126 29 O -0.184 6.184 30 H 0.091 0.909 31 H 0.057 0.943 32 H 0.047 0.953 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.058 0.942 37 H 0.001 0.999 38 H 0.030 0.970 39 H 0.375 0.625 40 H 0.253 0.747 41 H 0.121 0.879 42 H 0.114 0.886 43 H 0.095 0.905 44 H 0.074 0.926 45 H 0.159 0.841 46 H 0.165 0.835 47 H 0.120 0.880 48 H 0.084 0.916 49 H 0.055 0.945 50 H 0.074 0.926 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.231 -14.456 29.342 35.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.026 4.026 3 N -0.337 5.337 4 C -0.001 4.001 5 C 0.022 3.978 6 N -0.387 5.387 7 C -0.383 4.383 8 H 0.092 0.908 9 C -0.267 4.267 10 N -0.618 5.618 11 Si 0.807 3.193 12 H -0.208 1.208 13 H -0.219 1.219 14 H -0.197 1.197 15 C 0.296 3.704 16 O -0.465 6.465 17 C -0.159 4.159 18 C -0.057 4.057 19 C -0.071 4.071 20 C -0.227 4.227 21 C -0.233 4.233 22 C -0.036 4.036 23 C -0.110 4.110 24 H 0.171 0.829 25 C -0.207 4.207 26 C -0.151 4.151 27 H 0.152 0.848 28 C -0.183 4.183 29 O -0.082 6.082 30 H 0.110 0.890 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.103 0.897 34 H 0.123 0.877 35 H 0.109 0.891 36 H 0.077 0.923 37 H 0.019 0.981 38 H 0.048 0.952 39 H 0.207 0.793 40 H 0.062 0.938 41 H 0.139 0.861 42 H 0.133 0.867 43 H 0.114 0.886 44 H 0.092 0.908 45 H 0.177 0.823 46 H 0.182 0.818 47 H 0.139 0.861 48 H 0.102 0.898 49 H 0.074 0.926 50 H 0.093 0.907 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -14.119 -13.790 29.237 35.275 hybrid contribution 0.990 0.640 -1.008 1.551 sum -13.129 -13.151 28.229 33.797 Atomic orbital electron populations 1.22177 0.94565 1.03642 1.02065 1.21931 0.95434 0.80228 1.05016 1.48051 1.65118 1.15679 1.04823 1.21289 0.95798 0.97570 0.85460 1.20952 0.94887 0.95178 0.86787 1.42402 1.12061 1.61134 1.23072 1.19596 0.90337 1.25693 1.02642 0.90845 1.25649 1.01829 1.00357 0.98876 1.69828 1.33673 1.38369 1.19917 0.85063 0.79169 0.76829 0.78207 1.20759 1.21950 1.19672 1.21281 0.76273 0.86282 0.86553 1.90722 1.47490 1.20293 1.88040 1.21676 1.05788 0.99696 0.88743 1.19733 1.03681 0.96689 0.85616 1.22329 0.84245 1.03808 0.96742 1.21839 1.01613 1.02589 0.96693 1.21749 0.93809 1.06528 1.01246 1.21771 0.96678 0.97034 0.88071 1.20849 0.86082 1.07678 0.96426 0.82935 1.23247 0.98621 0.94504 1.04292 1.22633 0.98199 0.95636 0.98613 0.84804 1.21378 1.02351 1.01133 0.93430 1.83925 1.35642 1.57960 1.30659 0.89020 0.92348 0.93374 0.89663 0.87660 0.89072 0.92348 0.98133 0.95175 0.79300 0.93797 0.86095 0.86742 0.88633 0.90773 0.82298 0.81780 0.86129 0.89784 0.92644 0.90682 0.93671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 10.24 71.98 0.74 -1.68 16 2 C 0.10 1.67 5.93 86.38 0.51 2.18 16 3 N -0.60 -16.39 2.47 -821.81 -2.03 -18.42 16 4 C 0.12 4.32 5.52 86.38 0.48 4.79 16 5 C 0.15 6.48 6.58 86.38 0.57 7.05 16 6 N -0.74 -40.09 5.60 -343.45 -1.92 -42.02 16 7 C -0.25 -14.69 9.99 84.03 0.84 -13.85 16 8 H 0.07 4.15 7.83 -2.91 -0.02 4.12 16 9 C -0.07 -4.43 5.50 84.86 0.47 -3.96 16 10 N -0.97 -60.64 13.06 21.65 0.28 -60.36 16 11 Si 0.98 47.24 29.55 68.60 2.03 49.27 16 12 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 13 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 14 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 15 C 0.51 14.60 7.67 87.66 0.67 15.27 16 16 O -0.59 -22.91 15.56 -3.01 -0.05 -22.96 16 17 C -0.12 -2.27 4.24 29.85 0.13 -2.15 16 18 C -0.02 -0.42 5.04 29.85 0.15 -0.27 16 19 C -0.02 -0.45 6.57 24.83 0.16 -0.28 16 20 C -0.21 -3.88 10.81 22.19 0.24 -3.64 16 21 C -0.21 -3.64 10.81 22.19 0.24 -3.40 16 22 C 0.01 0.25 5.90 24.84 0.15 0.40 16 23 C -0.09 -1.10 6.24 -11.54 -0.07 -1.17 16 24 H 0.15 1.13 8.14 -2.39 -0.02 1.11 16 25 C -0.17 -1.88 9.82 30.62 0.30 -1.58 16 26 C -0.13 -1.32 6.41 -10.77 -0.07 -1.38 16 27 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 28 C -0.13 -1.50 9.15 71.98 0.66 -0.85 16 29 O -0.18 -3.91 9.63 -2.44 -0.02 -3.94 16 30 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 0.83 7.22 -2.39 -0.02 0.81 16 32 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.08 1.53 8.07 -2.39 -0.02 1.51 16 34 H 0.11 1.28 6.44 -2.39 -0.02 1.27 16 35 H 0.09 2.92 8.07 -2.39 -0.02 2.90 16 36 H 0.06 2.37 7.42 -2.39 -0.02 2.35 16 37 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 38 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 39 H 0.38 21.20 7.67 -92.71 -0.71 20.49 16 40 H 0.25 15.27 8.31 -92.70 -0.77 14.50 16 41 H 0.12 1.76 7.40 -2.39 -0.02 1.74 16 42 H 0.11 1.76 7.18 -2.39 -0.02 1.74 16 43 H 0.10 2.17 8.10 -2.39 -0.02 2.15 16 44 H 0.07 1.78 8.10 -2.39 -0.02 1.76 16 45 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16 46 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 47 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.08 1.24 7.88 -2.39 -0.02 1.22 16 49 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 51 H 0.04 0.68 7.27 -2.39 -0.02 0.67 16 Total: -1.00 -76.52 419.96 4.64 -71.89 By element: Atomic # 1 Polarization: 30.86 SS G_CDS: 0.20 Total: 31.05 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: 6.16 Total: -4.51 kcal Atomic # 7 Polarization: -117.12 SS G_CDS: -3.67 Total: -120.80 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.07 Total: -26.90 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal Total: -76.52 4.64 -71.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716228353.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.610 kcal (2) G-P(sol) polarization free energy of solvation -76.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds