Wall clock time and date at job start Tue Mar 31 2020 18:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.47176 * 2 1 4 4 C 1.46501 * 119.99505 * 270.00146 * 3 2 1 5 5 C 1.53002 * 109.46984 * 269.99700 * 4 3 2 6 6 N 1.46497 * 109.47305 * 180.02562 * 5 4 3 7 7 C 1.36938 * 120.00187 * 180.02562 * 6 5 4 8 8 H 1.08000 * 119.99727 * 359.97438 * 7 6 5 9 9 C 1.38809 * 119.99841 * 179.97438 * 7 6 5 10 10 N 1.31616 * 120.00334 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99673 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47457 * 60.00006 * 11 9 7 13 13 H 1.48502 * 109.46973 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.46968 * 299.99820 * 11 9 7 15 15 C 1.34771 * 120.00048 * 89.99856 * 3 2 1 16 16 O 1.21284 * 119.99606 * 180.02562 * 15 3 2 17 17 C 1.50699 * 120.00404 * 359.97438 * 15 3 2 18 18 C 1.52998 * 109.47340 * 180.02562 * 17 15 3 19 19 C 1.50699 * 109.47019 * 180.02562 * 18 17 15 20 20 C 1.34518 * 125.79172 * 90.00030 * 19 18 17 21 21 C 1.41383 * 106.84198 * 180.02562 * 20 19 18 22 22 C 1.34522 * 106.83827 * 0.02562 * 21 20 19 23 23 C 1.50697 * 125.78503 * 179.97438 * 22 21 20 24 24 H 1.09001 * 115.55460 * 334.27660 * 23 22 21 25 25 C 1.53006 * 117.49508 * 188.61069 * 23 22 21 26 26 C 1.52997 * 117.49950 * 119.99064 * 23 22 21 27 27 H 1.09002 * 117.49910 * 359.97438 * 26 23 22 28 28 C 1.53001 * 117.49889 * 214.97967 * 26 23 22 29 29 O 1.34295 * 108.42213 * 0.26210 * 22 21 20 30 30 H 1.09004 * 109.46776 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47055 * 300.00275 * 1 2 3 32 32 H 1.08995 * 109.46954 * 60.00369 * 1 2 3 33 33 H 1.08994 * 109.47141 * 239.99404 * 2 1 3 34 34 H 1.09008 * 109.47011 * 119.99815 * 2 1 3 35 35 H 1.08992 * 109.47346 * 29.99610 * 4 3 2 36 36 H 1.09000 * 109.46619 * 150.00339 * 4 3 2 37 37 H 1.09007 * 109.46839 * 300.00610 * 5 4 3 38 38 H 1.09001 * 109.47009 * 59.99864 * 5 4 3 39 39 H 0.96998 * 119.99811 * 359.97438 * 6 5 4 40 40 H 0.97001 * 120.00387 * 180.02562 * 10 9 7 41 41 H 1.09007 * 109.46614 * 60.00219 * 17 15 3 42 42 H 1.09000 * 109.47423 * 300.00444 * 17 15 3 43 43 H 1.08994 * 109.46935 * 60.00276 * 18 17 15 44 44 H 1.09008 * 109.47118 * 300.00198 * 18 17 15 45 45 H 1.07995 * 126.57681 * 0.05743 * 20 19 18 46 46 H 1.07992 * 126.58148 * 180.02562 * 21 20 19 47 47 H 1.08990 * 117.50086 * 359.97438 * 25 23 22 48 48 H 1.09004 * 117.49623 * 145.02605 * 25 23 22 49 49 H 1.08998 * 109.46673 * 299.97655 * 28 26 23 50 50 H 1.08994 * 109.47426 * 59.98444 * 28 26 23 51 51 H 1.09000 * 109.47070 * 179.97438 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.7075 1.8313 -1.7105 6 7 3.9519 2.5223 -2.9789 7 6 5.1840 2.4494 -3.5721 8 1 5.9757 1.8828 -3.1046 9 6 5.4153 3.1037 -4.7743 10 7 4.4506 3.7946 -5.3438 11 14 7.0958 3.0036 -5.5838 12 1 7.4191 1.5848 -5.8796 13 1 7.0835 3.7830 -6.8478 14 1 8.1209 3.5642 -4.6671 15 6 2.2430 2.0166 1.1671 16 8 2.6468 3.1602 1.1671 17 6 1.9913 1.3065 2.4723 18 6 2.3222 2.2441 3.6352 19 6 2.0710 1.5337 4.9403 20 6 2.9688 0.7995 5.6218 21 6 2.3129 0.3215 6.7795 22 6 1.0533 0.7918 6.7359 23 6 -0.0181 0.5383 7.7648 24 1 0.0934 -0.3785 8.3437 25 6 -1.4400 0.9946 7.4313 26 6 -0.6177 1.7539 8.4746 27 1 -0.2370 2.7370 8.1975 28 6 -1.0147 1.5898 9.9430 29 8 0.9108 1.5203 5.6167 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 1.5818 1.6876 -2.0284 36 1 2.0956 3.1410 -1.1384 37 1 4.3883 2.2155 -0.9507 38 1 3.8745 0.7621 -1.8407 39 1 3.2407 3.0309 -3.3990 40 1 4.6121 4.2515 -6.1840 41 1 2.6212 0.4187 2.5302 42 1 0.9432 1.0127 2.5299 43 1 1.6920 3.1315 3.5770 44 1 3.3703 2.5383 3.5778 45 1 3.9940 0.6116 5.3391 46 1 2.7409 -0.3015 7.5508 47 1 -1.6003 1.4785 6.4679 48 1 -2.2638 0.3782 7.7912 49 1 -1.7667 0.8056 10.0306 50 1 -0.1365 1.3184 10.5287 51 1 -1.4238 2.5288 10.3159 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716228354.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:58 Heat of formation + Delta-G solvation = 2.882619 kcal Electronic energy + Delta-G solvation = -27871.284042 eV Core-core repulsion = 23966.214313 eV Total energy + Delta-G solvation = -3905.069729 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.85829 -39.93169 -38.17960 -36.28319 -34.66949 -34.11580 -33.04627 -31.73990 -30.29619 -30.04605 -28.55967 -27.40150 -25.15318 -23.68293 -23.24781 -22.33226 -21.97281 -21.35952 -21.11630 -20.09750 -18.85792 -17.56894 -17.11459 -16.83694 -16.33044 -16.04316 -15.58852 -15.23143 -14.84895 -14.61401 -14.07745 -13.95627 -13.91434 -13.70173 -13.54307 -13.49186 -13.10952 -13.02508 -12.97184 -12.69435 -12.54630 -12.48624 -12.33342 -12.25733 -11.93380 -11.79066 -11.44321 -11.24892 -11.07444 -11.01387 -10.94543 -10.86481 -10.63448 -10.54045 -10.12533 -10.04014 -9.77373 -9.62027 -8.84334 -8.51221 -8.39578 -6.90616 -5.73527 -3.02718 1.40429 2.33098 2.56925 2.73781 3.10332 3.38534 3.46774 3.50792 3.52264 4.00079 4.27783 4.36455 4.39479 4.63490 4.68602 4.75082 4.79165 4.81485 4.86417 4.86871 5.01631 5.10569 5.16350 5.26237 5.27350 5.30928 5.33308 5.49129 5.53360 5.54315 5.55555 5.63269 5.65897 5.67750 5.68670 5.75887 5.79521 5.83832 5.87152 5.96300 6.05352 6.08710 6.17647 6.31854 6.59023 6.77039 6.94095 6.97598 7.52514 7.72156 8.29651 8.45033 9.55756 10.12264 10.47347 11.49297 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.024224 B = 0.001762 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.587355 B =15889.502162 C =16364.639568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.102 3.898 3 N -0.607 5.607 4 C 0.108 3.892 5 C 0.143 3.857 6 N -0.730 5.730 7 C -0.239 4.239 8 H 0.069 0.931 9 C -0.014 4.014 10 N -0.934 5.934 11 Si 0.909 3.091 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.286 1.286 15 C 0.512 3.488 16 O -0.533 6.533 17 C -0.135 4.135 18 C -0.025 4.025 19 C -0.005 4.005 20 C -0.207 4.207 21 C -0.202 4.202 22 C 0.013 3.987 23 C -0.080 4.080 24 H 0.133 0.867 25 C -0.166 4.166 26 C -0.141 4.141 27 H 0.107 0.893 28 C -0.123 4.123 29 O -0.172 6.172 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.022 0.978 38 H 0.017 0.983 39 H 0.384 0.616 40 H 0.256 0.744 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.104 0.896 45 H 0.149 0.851 46 H 0.146 0.854 47 H 0.101 0.899 48 H 0.103 0.897 49 H 0.058 0.942 50 H 0.062 0.938 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.666 -10.946 29.084 33.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.021 4.021 3 N -0.340 5.340 4 C -0.015 4.015 5 C 0.015 3.985 6 N -0.375 5.375 7 C -0.370 4.370 8 H 0.087 0.913 9 C -0.209 4.209 10 N -0.582 5.582 11 Si 0.740 3.260 12 H -0.213 1.213 13 H -0.216 1.216 14 H -0.212 1.212 15 C 0.299 3.701 16 O -0.410 6.410 17 C -0.175 4.175 18 C -0.062 4.062 19 C -0.055 4.055 20 C -0.226 4.226 21 C -0.221 4.221 22 C -0.037 4.037 23 C -0.098 4.098 24 H 0.151 0.849 25 C -0.203 4.203 26 C -0.159 4.159 27 H 0.125 0.875 28 C -0.180 4.180 29 O -0.069 6.069 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.040 0.960 38 H 0.035 0.965 39 H 0.217 0.783 40 H 0.065 0.935 41 H 0.115 0.885 42 H 0.113 0.887 43 H 0.107 0.893 44 H 0.122 0.878 45 H 0.167 0.833 46 H 0.164 0.836 47 H 0.119 0.881 48 H 0.121 0.879 49 H 0.077 0.923 50 H 0.081 0.919 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.546 -10.222 28.941 33.549 hybrid contribution 0.928 -0.173 -0.678 1.162 sum -12.618 -10.396 28.263 32.651 Atomic orbital electron populations 1.22221 0.95941 1.02209 1.02618 1.21602 0.94331 0.82641 1.03562 1.47950 1.65518 1.14232 1.06303 1.21695 0.98091 0.98409 0.83286 1.20903 0.92789 0.95440 0.89389 1.42200 1.12870 1.60772 1.21648 1.19166 0.89323 1.26153 1.02371 0.91264 1.24743 0.97836 1.00322 0.98047 1.69649 1.31648 1.37331 1.19586 0.86238 0.83769 0.77349 0.78654 1.21279 1.21638 1.21246 1.20489 0.77565 0.86766 0.85249 1.90747 1.45142 1.17826 1.87277 1.21716 1.04184 0.99812 0.91830 1.19882 1.04507 0.96976 0.84884 1.22444 0.83651 1.02837 0.96567 1.21605 1.01225 1.03095 0.96646 1.21462 0.93658 1.06180 1.00792 1.21305 0.95955 0.98218 0.88229 1.20570 0.91468 1.00035 0.97680 0.84942 1.23195 0.93041 1.03242 1.00784 1.22521 1.02941 0.96166 0.94290 0.87473 1.21388 1.01339 1.02266 0.93037 1.83920 1.35327 1.57879 1.29791 0.91506 0.92616 0.91947 0.89726 0.90475 0.90581 0.89729 0.95964 0.96512 0.78277 0.93453 0.88463 0.88712 0.89251 0.87775 0.83313 0.83613 0.88072 0.87901 0.92256 0.91896 0.91711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 10.24 37.16 0.38 -1.10 16 2 C 0.10 1.02 5.93 -4.04 -0.02 1.00 16 3 N -0.61 -8.47 2.47 -173.68 -0.43 -8.90 16 4 C 0.11 1.87 5.52 -4.04 -0.02 1.85 16 5 C 0.14 3.07 6.58 -4.04 -0.03 3.04 16 6 N -0.73 -19.32 5.60 -59.91 -0.34 -19.65 16 7 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 10 N -0.93 -28.80 13.06 55.49 0.72 -28.08 16 11 Si 0.91 22.90 29.55 -169.99 -5.02 17.88 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 13 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 15 C 0.51 7.43 7.67 -10.99 -0.08 7.35 16 16 O -0.53 -10.04 15.56 5.55 0.09 -9.95 16 17 C -0.14 -1.39 4.23 -27.88 -0.12 -1.51 16 18 C -0.02 -0.27 5.04 -27.88 -0.14 -0.41 16 19 C -0.01 -0.05 6.58 -35.62 -0.23 -0.29 16 20 C -0.21 -2.08 10.81 -39.70 -0.43 -2.51 16 21 C -0.20 -1.91 10.81 -39.70 -0.43 -2.34 16 22 C 0.01 0.12 6.80 -35.62 -0.24 -0.12 16 23 C -0.08 -0.56 5.96 -91.77 -0.55 -1.11 16 24 H 0.13 0.70 8.14 -51.93 -0.42 0.28 16 25 C -0.17 -1.06 9.81 -26.73 -0.26 -1.32 16 26 C -0.14 -0.90 6.11 -90.62 -0.55 -1.46 16 27 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 28 C -0.12 -0.55 10.19 37.16 0.38 -0.18 16 29 O -0.17 -1.93 10.36 5.71 0.06 -1.88 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.47 7.22 -51.92 -0.37 0.10 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.87 8.07 -51.93 -0.42 0.45 16 34 H 0.08 0.62 6.44 -51.92 -0.33 0.28 16 35 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 36 H 0.08 1.64 7.42 -51.93 -0.39 1.25 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.38 10.53 7.67 -40.82 -0.31 10.22 16 40 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 41 H 0.10 0.85 7.40 -51.92 -0.38 0.46 16 42 H 0.09 0.85 7.18 -51.93 -0.37 0.47 16 43 H 0.09 1.03 8.10 -51.93 -0.42 0.61 16 44 H 0.10 1.15 8.10 -51.92 -0.42 0.73 16 45 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 46 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 47 H 0.10 0.75 7.96 -51.93 -0.41 0.34 16 48 H 0.10 0.49 8.05 -51.93 -0.42 0.07 16 49 H 0.06 0.22 7.90 -51.93 -0.41 -0.19 16 50 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 51 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 LS Contribution 422.67 15.07 6.37 6.37 Total: -1.00 -34.67 422.67 -10.01 -44.68 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -8.86 Total: 6.21 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -2.60 Total: -6.68 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: -0.04 Total: -56.63 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.15 Total: -11.83 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -34.67 -10.01 -44.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716228354.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.558 kcal (2) G-P(sol) polarization free energy of solvation -34.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds