Wall clock time and date at job start Tue Mar 31 2020 18:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.47176 * 2 1 4 4 C 1.46501 * 119.99505 * 270.00146 * 3 2 1 5 5 C 1.53002 * 109.46984 * 269.99700 * 4 3 2 6 6 N 1.46497 * 109.47305 * 180.02562 * 5 4 3 7 7 C 1.36938 * 120.00187 * 180.02562 * 6 5 4 8 8 H 1.08000 * 119.99727 * 359.97438 * 7 6 5 9 9 C 1.38809 * 119.99841 * 179.97438 * 7 6 5 10 10 N 1.31616 * 120.00334 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99673 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47457 * 60.00006 * 11 9 7 13 13 H 1.48502 * 109.46973 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.46968 * 299.99820 * 11 9 7 15 15 C 1.34771 * 120.00048 * 89.99856 * 3 2 1 16 16 O 1.21284 * 119.99606 * 180.02562 * 15 3 2 17 17 C 1.50699 * 120.00404 * 359.97438 * 15 3 2 18 18 C 1.52998 * 109.47340 * 180.02562 * 17 15 3 19 19 C 1.50699 * 109.47019 * 180.02562 * 18 17 15 20 20 C 1.34518 * 125.79172 * 90.00030 * 19 18 17 21 21 C 1.41383 * 106.84198 * 180.02562 * 20 19 18 22 22 C 1.34522 * 106.83827 * 0.02562 * 21 20 19 23 23 C 1.50697 * 125.78503 * 179.97438 * 22 21 20 24 24 H 1.09001 * 115.55460 * 334.27660 * 23 22 21 25 25 C 1.53006 * 117.49508 * 188.61069 * 23 22 21 26 26 C 1.52997 * 117.49950 * 119.99064 * 23 22 21 27 27 H 1.09002 * 117.49910 * 359.97438 * 26 23 22 28 28 C 1.53001 * 117.49889 * 214.97967 * 26 23 22 29 29 O 1.34295 * 108.42213 * 0.26210 * 22 21 20 30 30 H 1.09004 * 109.46776 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47055 * 300.00275 * 1 2 3 32 32 H 1.08995 * 109.46954 * 60.00369 * 1 2 3 33 33 H 1.08994 * 109.47141 * 239.99404 * 2 1 3 34 34 H 1.09008 * 109.47011 * 119.99815 * 2 1 3 35 35 H 1.08992 * 109.47346 * 29.99610 * 4 3 2 36 36 H 1.09000 * 109.46619 * 150.00339 * 4 3 2 37 37 H 1.09007 * 109.46839 * 300.00610 * 5 4 3 38 38 H 1.09001 * 109.47009 * 59.99864 * 5 4 3 39 39 H 0.96998 * 119.99811 * 359.97438 * 6 5 4 40 40 H 0.97001 * 120.00387 * 180.02562 * 10 9 7 41 41 H 1.09007 * 109.46614 * 60.00219 * 17 15 3 42 42 H 1.09000 * 109.47423 * 300.00444 * 17 15 3 43 43 H 1.08994 * 109.46935 * 60.00276 * 18 17 15 44 44 H 1.09008 * 109.47118 * 300.00198 * 18 17 15 45 45 H 1.07995 * 126.57681 * 0.05743 * 20 19 18 46 46 H 1.07992 * 126.58148 * 180.02562 * 21 20 19 47 47 H 1.08990 * 117.50086 * 359.97438 * 25 23 22 48 48 H 1.09004 * 117.49623 * 145.02605 * 25 23 22 49 49 H 1.08998 * 109.46673 * 299.97655 * 28 26 23 50 50 H 1.08994 * 109.47426 * 59.98444 * 28 26 23 51 51 H 1.09000 * 109.47070 * 179.97438 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.7075 1.8313 -1.7105 6 7 3.9519 2.5223 -2.9789 7 6 5.1840 2.4494 -3.5721 8 1 5.9757 1.8828 -3.1046 9 6 5.4153 3.1037 -4.7743 10 7 4.4506 3.7946 -5.3438 11 14 7.0958 3.0036 -5.5838 12 1 7.4191 1.5848 -5.8796 13 1 7.0835 3.7830 -6.8478 14 1 8.1209 3.5642 -4.6671 15 6 2.2430 2.0166 1.1671 16 8 2.6468 3.1602 1.1671 17 6 1.9913 1.3065 2.4723 18 6 2.3222 2.2441 3.6352 19 6 2.0710 1.5337 4.9403 20 6 2.9688 0.7995 5.6218 21 6 2.3129 0.3215 6.7795 22 6 1.0533 0.7918 6.7359 23 6 -0.0181 0.5383 7.7648 24 1 0.0934 -0.3785 8.3437 25 6 -1.4400 0.9946 7.4313 26 6 -0.6177 1.7539 8.4746 27 1 -0.2370 2.7370 8.1975 28 6 -1.0147 1.5898 9.9430 29 8 0.9108 1.5203 5.6167 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 1.5818 1.6876 -2.0284 36 1 2.0956 3.1410 -1.1384 37 1 4.3883 2.2155 -0.9507 38 1 3.8745 0.7621 -1.8407 39 1 3.2407 3.0309 -3.3990 40 1 4.6121 4.2515 -6.1840 41 1 2.6212 0.4187 2.5302 42 1 0.9432 1.0127 2.5299 43 1 1.6920 3.1315 3.5770 44 1 3.3703 2.5383 3.5778 45 1 3.9940 0.6116 5.3391 46 1 2.7409 -0.3015 7.5508 47 1 -1.6003 1.4785 6.4679 48 1 -2.2638 0.3782 7.7912 49 1 -1.7667 0.8056 10.0306 50 1 -0.1365 1.3184 10.5287 51 1 -1.4238 2.5288 10.3159 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716228354.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:57 Heat of formation + Delta-G solvation = -16.348912 kcal Electronic energy + Delta-G solvation = -27872.117983 eV Core-core repulsion = 23966.214313 eV Total energy + Delta-G solvation = -3905.903671 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.61142 -41.10989 -38.68448 -37.62213 -36.38177 -35.12596 -33.86114 -33.50254 -31.57580 -30.75034 -29.52113 -28.54022 -26.34903 -25.20425 -24.24088 -23.36332 -22.81507 -22.60395 -21.64341 -20.81111 -20.05428 -19.18606 -18.41862 -17.61985 -17.45593 -17.05768 -16.64657 -16.53852 -16.01019 -15.52198 -15.40394 -15.19716 -15.11859 -14.78333 -14.62672 -14.46101 -14.41930 -13.93421 -13.75108 -13.57791 -13.42018 -13.21642 -13.09026 -13.05763 -12.89385 -12.77873 -12.76280 -12.60883 -12.38079 -12.32057 -12.19291 -12.17796 -11.89139 -11.85994 -11.54546 -11.02086 -10.98582 -10.91630 -10.72604 -9.74428 -9.12155 -9.07759 -7.98539 -5.29595 0.65635 1.45325 1.49697 1.55578 1.58997 1.59261 1.81213 2.02974 2.55299 2.87584 3.33676 3.35235 3.53138 3.79781 3.86632 3.89189 3.93417 3.98076 4.04547 4.13434 4.15791 4.20560 4.21580 4.33615 4.39200 4.43256 4.51535 4.54790 4.57483 4.69523 4.75719 4.87931 4.88335 4.90180 4.93365 4.95551 4.97321 5.06003 5.07594 5.09665 5.14367 5.17951 5.22548 5.37104 5.39843 5.42301 5.55753 5.61197 6.22488 6.22548 6.40562 7.14685 7.28686 8.00539 8.25899 9.24523 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.024224 B = 0.001762 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.587355 B =15889.502162 C =16364.639568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.095 3.905 3 N -0.605 5.605 4 C 0.123 3.877 5 C 0.150 3.850 6 N -0.743 5.743 7 C -0.254 4.254 8 H 0.074 0.926 9 C -0.072 4.072 10 N -0.967 5.967 11 Si 0.979 3.021 12 H -0.273 1.273 13 H -0.291 1.291 14 H -0.280 1.280 15 C 0.506 3.494 16 O -0.585 6.585 17 C -0.120 4.120 18 C -0.020 4.020 19 C -0.021 4.021 20 C -0.208 4.208 21 C -0.211 4.211 22 C 0.005 3.995 23 C -0.086 4.086 24 H 0.155 0.845 25 C -0.164 4.164 26 C -0.142 4.142 27 H 0.090 0.910 28 C -0.120 4.120 29 O -0.188 6.188 30 H 0.091 0.909 31 H 0.057 0.943 32 H 0.047 0.953 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.058 0.942 37 H 0.001 0.999 38 H 0.030 0.970 39 H 0.375 0.625 40 H 0.253 0.747 41 H 0.122 0.878 42 H 0.115 0.885 43 H 0.074 0.926 44 H 0.097 0.903 45 H 0.162 0.838 46 H 0.167 0.833 47 H 0.085 0.915 48 H 0.123 0.877 49 H 0.071 0.929 50 H 0.067 0.933 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.910 -13.550 30.769 36.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.026 4.026 3 N -0.337 5.337 4 C -0.001 4.001 5 C 0.022 3.978 6 N -0.387 5.387 7 C -0.385 4.385 8 H 0.091 0.909 9 C -0.265 4.265 10 N -0.617 5.617 11 Si 0.807 3.193 12 H -0.199 1.199 13 H -0.217 1.217 14 H -0.207 1.207 15 C 0.296 3.704 16 O -0.466 6.466 17 C -0.160 4.160 18 C -0.057 4.057 19 C -0.070 4.070 20 C -0.227 4.227 21 C -0.229 4.229 22 C -0.044 4.044 23 C -0.103 4.103 24 H 0.172 0.828 25 C -0.201 4.201 26 C -0.160 4.160 27 H 0.108 0.892 28 C -0.177 4.177 29 O -0.086 6.086 30 H 0.110 0.890 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.104 0.896 34 H 0.124 0.876 35 H 0.109 0.891 36 H 0.077 0.923 37 H 0.019 0.981 38 H 0.048 0.952 39 H 0.207 0.793 40 H 0.062 0.938 41 H 0.140 0.860 42 H 0.133 0.867 43 H 0.092 0.908 44 H 0.115 0.885 45 H 0.179 0.821 46 H 0.184 0.816 47 H 0.104 0.896 48 H 0.141 0.859 49 H 0.090 0.910 50 H 0.086 0.914 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.805 -12.886 30.662 36.011 hybrid contribution 0.973 0.624 -1.125 1.613 sum -12.832 -12.263 29.537 34.460 Atomic orbital electron populations 1.22183 0.94591 1.03643 1.02063 1.21934 0.95417 0.80228 1.05038 1.48052 1.65108 1.15685 1.04832 1.21292 0.95815 0.97567 0.85446 1.20949 0.94869 0.95180 0.86797 1.42390 1.12043 1.61156 1.23065 1.19570 0.90358 1.25908 1.02697 0.90854 1.25632 1.01774 1.00290 0.98802 1.69812 1.33728 1.38340 1.19865 0.85145 0.79087 0.77800 0.77301 1.19875 1.21733 1.20664 1.21275 0.76278 0.86284 0.86550 1.90725 1.47503 1.20277 1.88046 1.21681 1.05838 0.99717 0.88728 1.19742 1.03748 0.96687 0.85543 1.22375 0.84035 1.03800 0.96839 1.21871 1.01672 1.02494 0.96678 1.21771 0.93571 1.06491 1.01114 1.21893 0.97002 0.97494 0.88050 1.20795 0.91063 1.01074 0.97389 0.82802 1.23241 0.93400 1.03299 1.00176 1.22545 1.02731 0.95178 0.95539 0.89220 1.21391 1.01888 1.02896 0.91494 1.83907 1.35687 1.58497 1.30536 0.89026 0.92367 0.93355 0.89645 0.87633 0.89069 0.92347 0.98141 0.95184 0.79309 0.93790 0.86015 0.86724 0.90753 0.88509 0.82076 0.81568 0.89615 0.85870 0.91026 0.91420 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.46 10.24 71.98 0.74 -1.72 16 2 C 0.10 1.69 5.93 86.38 0.51 2.20 16 3 N -0.60 -16.48 2.47 -821.80 -2.03 -18.51 16 4 C 0.12 4.33 5.52 86.38 0.48 4.81 16 5 C 0.15 6.50 6.58 86.38 0.57 7.07 16 6 N -0.74 -40.13 5.60 -343.45 -1.92 -42.05 16 7 C -0.25 -14.86 9.99 84.03 0.84 -14.02 16 8 H 0.07 4.14 7.83 -2.91 -0.02 4.11 16 9 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 10 N -0.97 -60.58 13.06 21.65 0.28 -60.30 16 11 Si 0.98 47.16 29.55 68.60 2.03 49.19 16 12 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 13 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 14 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 15 C 0.51 14.67 7.67 87.66 0.67 15.34 16 16 O -0.59 -22.96 15.56 -3.04 -0.05 -23.01 16 17 C -0.12 -2.31 4.23 29.85 0.13 -2.18 16 18 C -0.02 -0.42 5.04 29.85 0.15 -0.27 16 19 C -0.02 -0.44 6.58 24.83 0.16 -0.28 16 20 C -0.21 -3.91 10.81 22.19 0.24 -3.67 16 21 C -0.21 -3.63 10.81 22.19 0.24 -3.39 16 22 C 0.01 0.10 6.80 24.83 0.17 0.26 16 23 C -0.09 -1.06 5.96 -11.54 -0.07 -1.13 16 24 H 0.15 1.20 8.14 -2.39 -0.02 1.18 16 25 C -0.16 -1.87 9.81 30.60 0.30 -1.57 16 26 C -0.14 -1.65 6.11 -10.79 -0.07 -1.72 16 27 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 28 C -0.12 -0.85 10.19 71.98 0.73 -0.11 16 29 O -0.19 -4.16 10.36 -2.48 -0.03 -4.19 16 30 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 0.84 7.22 -2.38 -0.02 0.82 16 32 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.09 1.54 8.07 -2.39 -0.02 1.52 16 34 H 0.11 1.30 6.44 -2.38 -0.02 1.29 16 35 H 0.09 2.93 8.07 -2.39 -0.02 2.91 16 36 H 0.06 2.38 7.42 -2.39 -0.02 2.36 16 37 H 0.00 0.03 8.14 -2.38 -0.02 0.01 16 38 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.38 21.22 7.67 -92.71 -0.71 20.51 16 40 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 41 H 0.12 1.78 7.40 -2.38 -0.02 1.76 16 42 H 0.11 1.79 7.18 -2.39 -0.02 1.77 16 43 H 0.07 1.80 8.10 -2.39 -0.02 1.78 16 44 H 0.10 2.20 8.10 -2.38 -0.02 2.18 16 45 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 46 H 0.17 2.04 8.06 -2.91 -0.02 2.01 16 47 H 0.09 1.25 7.96 -2.39 -0.02 1.23 16 48 H 0.12 0.87 8.05 -2.38 -0.02 0.86 16 49 H 0.07 0.34 7.90 -2.39 -0.02 0.32 16 50 H 0.07 0.42 8.14 -2.39 -0.02 0.41 16 51 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 Total: -1.00 -76.57 422.67 4.74 -71.83 By element: Atomic # 1 Polarization: 31.06 SS G_CDS: 0.19 Total: 31.26 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: 6.26 Total: -4.21 kcal Atomic # 7 Polarization: -117.19 SS G_CDS: -3.67 Total: -120.86 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.07 Total: -27.20 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Total: -76.57 4.74 -71.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716228354.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.484 kcal (2) G-P(sol) polarization free energy of solvation -76.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds